Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------ICU4                          --------->YAB1                         <---------YAB1                         --------->ICU4                       --------->YAB1                       <---------ICU4                      <---------YAB1                      --------->ICU4                    --------->YAB1                    <---------ICU4                   --------->ICU4                   <---------YAB1                                                           <-------GAMYB                 <---------ICU4                                                    <---------ICU4                 <--------HAHB4             <---------AHL20(2)                    --------->ICU4                <---------YAB1              <---------AHL20(1)                    <---------YAB1              <--------HAHB4                --------->AHL20(1)                 <---------YAB1              --------->YAB1     <---------AHL20(2)                     >>>>>>>>>ARR1      <------MYB46(1)              <---------ICU4   <---------YAB1                           >>>>>>>>>ARR2 <---------AHL20(2) --------->ZAT6 --------->ICU4<---------AHL20(2)                       --------->ATHB12    <------MYB83 --HSFC1(2)  --------->ICU4   <---------AHL20(1)        ------>ZmHOX2a(1)      --------->ICU4 ->HSFC1(2)  <---------YAB1 <---------YAB1  --------->ARR11(3)        <---------YAB1 <---------YAB1   ctaactctaaaaaccatcattattattattattattttttttctaatattttggcatcctacaatttagtttatgattgtgttgattattatttggttgt  5061600                                                                                       <---------RVE1(1)                                                                                      --------->ARR11(3)                                                                                   --------->YAB1                                                                             <-----------GT1                                                                        --------->TOE2(3)                                                                     <-----------GT1  <---------GLK1(2)               <---------TOE2(3)                               ----------->GT1  --------->WOX13(1)        <---------ALFIN1                                       <---------ZAT6--------->YAB1   ------->TEIL----------->GT1                           <---------ICU4 --------->TOE1(3)<---------AHL20(2)   atttgcatctacacattaagttaaacattgattttaaaaattaacatgaacaaaatgaatacttactgttaaaaccttataacaatcagatttttttttt  5061700                                                    --------------->AGL15                                                    <---------------AGL15                                                   ----------------->AGL2                                                   ----------------->AGL3                                                   ----------------->AG                                                   ----------------->AGL1                      <---------AHL20(1)           <-----------------AGL1                      --------->AHL20(2)      <---------MYB46(3)                      --------->AHL20(1)   <----------DOF2             --------->AHL20(2)                      <---------AHL20(2) <---------HSFC1(2)        ----------->GT1             --------->AHL20(2)          <---------HSFB2a(1)     ---------->DOF2        ----------->GT1               <------ZmHOX2a(1)  ---------->DOF2                  --------->ALFIN1 ---------->DOF2     --------->AHL20(2)  --------->HSFC1(2)  ---------->DOF2 ---------->DOF2  <------   aaacaaagaatggaaaaaaatgaataaatttgggaaacgaggaagctttggttacccaaaaaagaaagaaagaaaaaataaaagtattgaatgtggagat  5061800                                        <---------YAB1                                        --------->ICU4                                     --------->TGA2(2)                                    <-----------TGA1                                   <---------ANAC58                                   <---------ANAC58                                   <---------ANAC46                                   --------->bZIP60(1)                                   <---------ANAC55(2)                                   --------->ANAC55(2)--------->ZAT14                                   <---------bZIP60(1)<---------ZAT14                             ---                               <---------ZAT2       --------->ANAC46                          <------  <------ZmHOX2a(1)            --------->ZAT2     --------->ANAC46                            <------ ----------->GT1      <---------At4g35610--------->YAB1           ------>ZmHOX2a(1)        <--------- ---At4g35610         --------->At4g35610<---------ICU4<---------ALFIN1            <---------At4g35610   gagaggaaaaaaacacttactgtcatcttacccagttgcgtcatcatcaaacccacaacactctcttcctcttccctcttccttctgcttattttacttt  5061900                                                                    --------->WOX13(1)                                                                  <<<<<<<<<<WRKY38                                                                  <<<<<<<<<<WRKY26                                                                  <<<<<<<<<<WRKY43                                                                  ------------>CBF                                                                ----------->GT1                                                                <------MYB46(1)                      ----------->GT1                           <------MYB83     <-----------GT1 <---------------------WRI1              <------------CBF  <----------DOF2--------->LBD16                            --------->ATHB12 ------->ID1    --------->LBD16 ---------->DOF2            <---------YAB1 ----DOF2      --------->HSFB2a(2)        <----------DOF2<---------ANAC58 ---DAG2       <---------HSFB2a(2)   ---------->DOF2     <---------ANAC58  --------->ANAC46 --GT1        <---------LBD16--------->AHL20(2)<---------LBD16<---------WOX13(1)   <----------DOF2   ttctctttaaccattttcccgagagagaaaaataaaaagaaaagctttctctgggtttttcttgattggtcaattacacatctccctttctctcttctct  5062000                           <---------CCA1(2)                      <---------ANAC58                                  ------>MYB46(1)                      <---------ANAC58                                  ------>MYB83                  <---------ANAC58                            <---------REM1(2)                  <---------ANAC58                            <---------ZAT14              <----------DOF2                                 --------->ZAT14             <---------ANAC58                  <---------ANAC58       <---------MYB59             <---------ANAC58            ------>ZmHOX2a(1)<-----------GT1<---------ATHB12         <---------ANAC58 *TSS <----------DOF2 <---------ANAC58       --------->AtMYB61           ---         <---------ANAC58--------->REM1(1)     <---------ANAC46  --------->ANAC46       <----------DOF2   ctctcaccttcgcttgctttgcttgcttcatctctttggtctccttcttgcgttttctatttactacacagaccaaacaatagagagagactttaagcta  5062100                                                                               <---------ZAT6                                                                              <---------TOE1(3)                                                                              <---------TOE2(3)                                                                    >>>>>>>>>ARR1                                                                    >>>>>>>>>ARR2                                                                    >>>>>>>>>ARR1                                                                    >>>>>>>>>ARR2                  <-               --------->GLK1(2)                --------->ANAC46   <------ZmHOX2a(1)           ------              <---------GLK1(2)               --------->ZAT6      <---------YAB1             <-------            ----------->ARR10       --------->ZAT18              <---------TOE1(2)          <--------    ---------->DOF2            <--------P     <-----------GT1    <---------TOE2(3)  <---------TOE2(3) -------->GT1 --------->ARR14(2)    <---------ZAT18              <---------TOE2(2)  <---------TOE1(3)   tagaaaaaaagagagagattctctcaaatatgggttagtccacaattttcactaaacctcttcttcttaggattgtttttagggttagggttttgaggtg  5062200                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                                      --------->DEAR4(2)                                                                                      --------->ORA47(2)                                                                                     --------->ABI4(1)                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                    --------->ATERF1(2)                                                                                    --------->RRTF1(3)                                                                                    --------->RRTF1(2)                                                                                    --------->DREB2C(2)                                                                                    --------->DEAR3(1)                                                                                    --------->RAP2.6(2)                                                                                    <---------DEAR3(1)                                                                                    --------->RAP2.3(3)                                                                                    --------->RAP2.3(2)                                                                                   --------->ERF1                                                                                   --------->ORA47(2)                                                                                   --------->RRTF1(1)                                                                                   --------->RAP2.3(1)                                                                                   --------->DEAR4(2)                                                                                   --------->ATERF1(1)                                                                                  <---------DREB2C(1)                                                                                  <---------DEAR4(2)                                                                                  --------->At4g35610                                                                                  <---------RAP2.3(1)                                                                                  --------->ABI4(1)                                                                                  <---------At4g35610                                                                                  ------>NtERF2                                                                                 --------->RAP2.3(2)                                                                                 --------->RAP2.3(3)                                                                                 --------->ANAC46                                                                                 --------->RRTF1(3)                                                                                 --------->ATERF1(2)                                                                                 <---------ALFIN1                                                                                 <---------ATERF1(2)                                                                                 --------->DEAR3(1)                                                                                 <---------DEAR3(1)                                                                                 --------->RAP2.6(2)                                                                                 --------->RRTF1(2)                                                                                --------->ERF1                                                                                <------NtERF2                                                                                --------->ORA47(2)                                                                                --------->ATERF1(1)                                                                                --------->RAP2.6(1)                                                                                --------->DEAR4(2)                                                                                --------->RRTF1(1)                                                                               <---------RAP2.3(1)                                                                               <---------DEAR4(2)                                                                               ------>NtERF2                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                               <---------ATERF1(1)                                                                               --------->ABI4(1)                                                                               <---------DREB2C(1)                                                                              --------->RAP2.3(3)                                                                              --------->RRTF1(3)                                                                              --------->ATERF1(2)                                                                              --------->RAP2.6(2)                                                                              <---------ATERF1(2)                                                                              --------->DEAR3(1)                                                                              --------->RRTF1(2)                                                                              --------->RAP2.3(2)                                                                              --------->ANAC46                                                                              <---------DEAR3(1)                                                                              <---------ALFIN1                                                                             --------->RRTF1(1)                                                                             --------->DEAR4(2)                                                                             --------->ERF1                                                                             --------->RAP2.6(1)                                                                             --------->ATERF1(1)                                                                             --------->ORA47(2)                                                                             --------->RAP2.3(1)                                                                             <------NtERF2                                                                            ------>NtERF2                                                                            <---------DEAR4(2)                                                                            <---------DREB2C(1)                                                                            <---------ATERF1(1)                                                                            <---------RAP2.3(1)                                                                            <---------At4g35610                                                                            --------->At4g35610                                                                           --------->ANAC46                                                                           --------->RAP2.3(3)                                                                           <---------DEAR3(1)                                                                           --------->DEAR3(1)                                                                           <---------ATERF1(2)                                                                           --------->RAP2.3(2)                                                                           --------->ATERF1(2)                                                                          --------->RAP2.3(1)                                                                          --------->ERF1------>NtERF2                                                                          --------->DEAR4(2)                                                                          --------->RRTF1(1)                                                                          --------->RAP2.6(1)                                                                          <------NtERF2--------->RAP2.3(3)                                                                          --------->ATERF1(1)                                                                          --------->ORA47(2)                                                                         <---------ATERF1(1)                                                                         ------>NtERF2--------->RAP2.3(1)                                                                         <---------RAP2.3(1)        -                                                                        --------->DEAR3(1)        ---                                                                        <---------DEAR3(1)        ---                                                                       --------->ATERF1(1) <---------HSFB2a(2)                                                                      <---------ATERF1(1)  --------->HSFB2a(2)                          <----------DOF2                             <-----------HVH21--------->DEAR3(1)                          <---------DAG2                             --------->DEAR3(1)--------->RAP2.3(2)                         --------------->AGL15                    <---------ALFIN1<---------ATERF1(1) -----ZmHOX2a(1)    <-------TEIL                 <---------ALFIN1 --------->AtMYB61--------->RAP2.6(1) --->ALFIN1  --------->LBD16                    ------>ZmHOX2a(1)--------->MYB46(3)<------NtERF2  <-- --At4g35610<---------LBD16            <---------LBD16         ------>NtERF2--------->ABI4(1)     <-- -TOE2(3)  <---------LBD16------>ZmHOX2a(1) <---------GLK1(1) --------->DEAR3(1)--------->RAP2.3(1)<-   aggagagcaagtatgcgggagtttcatcctttttgagttactctggattcctcaccctctaacgacgaccaccgtcgccgccgccgccgccgtctcgacg  5062300                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                          <-------GAMYB                                                                                          <---------At4g35610                                                                                          <---------ZAT2                                                                                          --------->ZAT2                                                                                          --------->ATERF1(1)                                                                                          <------NtERF2                                                                                          --------->At4g35610                                                                                          -----------                                                                                         <---------DEAR3(2)                                                                                         <---------MYB46(3)                                              ------>ZmHOX2a(1)                          <---------ERF1                                           ------>NtERF2                                 <---------RAP2.3(1)                                          <---------ALFIN1                               <---------RRTF1(1)                                          --------->DEAR3(1)                             <---------RAP2.6(1)                                         <------NtERF2                                   ------>NtERF2                                         --------->DEAR4(2)                              <---------ATERF1(1)                                         --------->ATERF1(1)                            <---------RAP2.3(2)                                         --------->RAP2.3(1)                            <---------RAP2.6(2)                                        --------->ABI4(1)                               <---------RAP2.3(3)                                        <---------ATERF1(1)                             <---------DEAR3(1)                                       --------->DREB2C(2)                            <---------DEAR4(2)                                       --------->RRTF1(2)                             <---------ATERF1(1)                                       --------->RAP2.3(3)                            <---------ORA47(2)                                       --------->RAP2.6(2)                            <---------RAP2.3(1)                                       --------->RAP2.3(2)                          --------->SPL7                                       <---------ATERF1(2)                          <---------ORA47(1)                                       --------->ATERF1(2)                          --------->ATERF1(1)                                       --------->RRTF1(3)                          ------>NtERF2                                       --------->DEAR3(1)                          <------NtERF2                                       <---------ALFIN1                            <---------ATERF1(1)                                      --------->RRTF1(1)                          <---------SPL7                                      <------NtERF2                               ----------->HVH21                                      --------->ATERF1(1)                        <---------ANAC46                                      --------->DEAR4(2)                        <---------At4g35610                                      --------->RAP2.3(1)                       --------->At4g35610                                      --------->RAP2.6(1)                       ------>NtERF2<-------                                      --------->ERF1                            <------NtERF2<-------                                      --------->ORA47(2)                        --------->ATERF1(1)                                     --------->LBD16                           <---------RAP2.3(1)                                     <---------ATERF1(1)                      <---------RAP2.6(2)                                     ------>NtERF2                            <---------DEAR3(1)                                    ------->GAMYB                             <---------RAP2.3(2)                                    --------->ANAC46                          <---------RRTF1(2)-----                                    --------->ANAC58                         --------->ATERF1(1)<----                                    --------->DEAR3(1)                     <---------ARR14(2)<------NtERF2 -------->KAN4(2)                   --------->ANAC58                       --------->ARR14(2)-------- ------>ARR14(2)                <---------ALFIN1                         <---------DEAR3(2) <-------- ------->TaMYB80              <-----------HVH21                          <---------MYB46(3)<---------DEAR3(1) -------KAN4(2)        --------->AtMYB61------>NtERF2                --------->ANAC46<---------DEAR3(1) -------ARR14(2)----------->HVH21  --------->MYB46(3)        <------NtERF2<-------GAMYB<------NtERF2 ---------TaMYB80  <---------ETT(2)<---------MYB55(2) <---------ATHB12<-----------HVH21--------->ATERF1(1)   aatatgctctaccaatgtctgacgaccaattccatcacccgccgcctccttcttcaatgaggcaccgttctacgtcggatgcggcggacggcggctgcgg  5062400                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                              <------                                                                                            <--------                                                                                      ------->PIF5                                                                                      <-------PIF5                                                                                      ------->MYC2                                                                                      <-------MYC2                                                                                      <-----------HVH21                                                                                      <-------MYC3                                                                                      ------->MYC3                                                                                     --------->ANAC58                                                                                     <---------ANAC55(2)                                                                                     ================                                                                                     --------->ANAC55(2)                                                                                     <---------TGA1a   <---------MYB46(3)                                                                --------->TGA1a >NtERF2                                                                             <---------O2 ----RAP2.3(1)                                                                    ---------------->PIF3(2) ---ANAC46                                                           <---------AtLEC2--------->bZIP60(2) ---DEAR3(1)                                                         <---------ALFIN1--------->O2 ->At4g35610                            --------->LBD16--------->DEAR3(1)   ========================= --LBD16                               <---------HSFB2a(2)   ---------->DOF2========================= -RAP2.3(1)                            --------->HSFB2a(2)   ==================================bZIP_DOF -ERF1  <---------AtMYB61             <---------LBD16  ----------->RAV1(1)  ---------->DOF2<---------DEAR3(1) >RAV1(2)                            -------->P     --------->RAP2.6(2)--------->ANAC58   --------->DEAR3(2) --ABI4(1)                         --------->ETT(2) --------->ANAC58<---------REM1(2)--------->ANAC46 --At4g35610                    <------MYB83  =================================================bZIP_DOF ->NtERF2          <---------MYB46(3)--------->MYB52(1)<---------ALFIN1--------->ANAC58----------->HVH21 --NtERF2         --------->ALFIN1 <---------ETT(2) --------->ANAC58--------->ZAT14  --------->ANAC58 ->ATERF1(1)<-------TEIL        <------MYB46(1)     --------->ANAC46<---------ZAT14<---------ALFIN1 -ATERF1(1)--------->ALFIN1    --------->MYB59---------->DOF2==================================bZIP_DOF   cgagattgttgaggtgcaaggtggtcacattgttcggtctaccggaagaaaagaccgccacagcaaagtctgcacggctaaagggccacgtgaccggcgc  5062500  Previous    Next  AGI:  At3g15030.1    Description:  TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4); transcription factor. similar to TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G53230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 5062026    to: 5064122    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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