Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <-----------GT1                                                    --------->AHL20(2)            ----------->HVH21          <------ZmHOX2a(2)    <---------WOX13(1)                 ===============================HOX2a_HOX2a   <---------ANAC58                   --------->ARR11(3)   <---------ANAC46                   <---------ARR11(3)       ------>ZmHOX2a(1)   <---------ANAC58               ---------->DOF2 --------->YAB1              <---------MYB52(1) --------ANAC58               ---------->DOF2 --------->AHL20(2)  <---------TOE2(3)     <---------DAG2 --------ANAC58           --------->ZAT14     --------->YAB1  --------->TOE2(3)         <----------DOF2 -----MYB52(1)           --------->ALFIN1 <---------YAB1      --------->ANAC55(2) <-----------GT1   tacttgcttgatatatgaccagagacagtggagaaagaaagatcacaattaaaaataaacagttccttaatgtttcttcggttttttcaacttttcatac  5020200                                    <---------At4g35610                                    --------->At4g35610                                   --------->ARR14(2)                                   <---------ARR14(2)                    <------ZmHOX2a(2)                                            --------->MYB46(3)           <---------WRKY38(1)    <---------CCA1(2)                      <---------ATHB12           <---------WRKY45--------->ZAT14                            --------->ICU4--------->MYB46(3)           <---------WRKY12<---------ZAT14                 ----------->GT1--------->ATHB12          --------->WRKY18(1)------->TEIL              <---------ARR14(2)--------->ICU4   <----------DOF2--------->YAB1 <---------MYB52(1)    --------->ARR14(2)<---------YAB1 <------ZmHOX2a(2)   attgtctttctggtcaacaaggatcacagtgaaccggtatctgaactgaatgtaacagaaccggttaatgtcttaatgatttatcaaccgatcgatttga  5020300                                                                   --------->MYB52(1)                                                       --------->At4g35610                                                       <---------At4g35610                                                       <---------ZAT14                     <---------ARR14(2)                --------->ZAT14     --------->WOX13(1)                    <---------GLK1(2)      --------->LBD16         <-----------GT1           <---------ZAT18         <---------MYB46(3)  <---------ZAT2    <------ZmHOX2a(2)           --------->ZAT14     <---------YAB1          --------->ZAT2    <---------ATHB12    ----------->HVH21--------->ARR14(2)   --------->ANAC46       <---------MYB52(2)  <---------At4g35610--------->GLK1(2)   <---------LBD16   ----------->HVH21  --------->YAB1   atccatctcacagtgcaaaacagaatctgaattgtgtttgttctgcgcaaaacactctgctgtgacaattaaccgatcaatctgaattgatatcaaattg  5020400                                                                               <---------PCF2                                                                               --------->TCP15(1)                                                                              <------MYB46(1)                                                                              <------MYB83                                                                             --------->MYB59                                                                          <------MYB83                                                                          <------MYB46(1)                                <-----------GT1                           <---------ZAT2                        --------->LBD16                                  --------->DAG2                       <---------HSFB2a(2)                           <---------HSFB2a(2)                       --------->HSFB2a(2)                           --------->HSFB2a(2)                     --------->SPL7                                 <---------LBD16                <---------ARR14(2)                                --------->ARR14(2)                --------->GLK1(2)                                 <---------ARR14(2)                <-----------ARR10                                <---------GLK1(1) ------>ZmHOX2a(1)                --------->ARR14(2)  --------->ANAC46        ---------->DOF2  <---------MYB46(3)          --------->TOE1(2)  <---------ICU4           --------->ANAC58   <---------AtMYB61         --------->MYB46(3) --------->ICU4    ---------->DOF2    --------->GLK1(1) ==================       ------>MYB83<---------SPL7 <-----------------AGL1 ----------->RAV1(1)--------->ALFIN1        <       ------>MYB46(1)<---------LBD16   ---------->DOF2 <----------ID1 <---------MYB52(1) <----------     <---------MYB59 --------->MYB52(1)---------->DOF2--------->ANAC58--------->LBD16 <---------ZAT6-   ctcaataccgaaccagcgaatcgtaccggaaatattacccccaaaggccaaaggagaagcaacaaagaaatccggaaggtgggtcctagtattatccaga  5020500                <---------YAB1              <--------HAHB4              --------->ATHB12              <---------ICU4             <---------YAB1             --------->ICU4           --------->bZIP60(1)           <---------bZIP60(1)      =======================bZIP_DOF      <---------ANAC58      =======================bZIP_DOF      --------->TGA1a                                     <---------CCA1(2)      <---------TGA1a                          <-----------HVH21                                 <---      <---------ANAC58                        <----------ID1                                     ----      --------->O2                            ----------->GT1                   <---------ALFIN1-----      <---------ANAC55(2)                    --------->DAG2------->TEIL   ---------->ARF1       -----      --------->ANAC55(2)         <---------WOX13(1)  --------->TOE1(3) ============================= <------ZmHOX2a(2)              --------->ATHB12--------->WRKY18(1)     --------->O2        <------ZmHOX2a(1) =======HOX2a_HOX2a      <------NtERF2 <---------------AGL15     <---------CCA1(2)  <------NtERF2<--- ---------ARR11(3)     --------->DEAR3(1)  ---------->DOF2<---------GLK1(2)  *TSS <---------DEAR3(1) -GT1 <---------O2   <---------At4g35610   =======================================bZIP_DOF ---------- -------->ARR11(3)---------->DOF2<------------CBF     --------->TOE2(3) --------->TGA1a   <---------TOE2(3)   tagatcatacgtggcatcattacagccgtcgaagtgattgacttaaaaaggtcaaaccttgaatctcatctctctcgtctcccctcggcgataaggaaat  5020600        --------->DEAR3(2)        --------->RAP2.6(3)  -------->P                      ---------->DOF2 <-----------GT1       ----------->GT1                                                              - ------ARR11(3)        ------>NtERF2                                                            ----- ----->ARR11(3)       --------->ZAT18                                                           ----- ---->CCA1(1)        <---------ANAC46                                                           ----- ---->RVE1(1)        --------->ATERF1(1)                  <---------TOE1(2)                    ------ ==========MYC_MYB  --------->At4g35610     --------->ARR11(3)          <---------WOX13(1)    ------- --------ARR10     --------->ALFIN1         <---------ARR11(3)        --------->ATHB12  --------->YAB1 ->GT1 --------->ARR14(2)      --------->YAB1 ------>ZmHOX2a(2)      <---------YAB1    <---------YAB1   atctaaccagaccggcccaaggagcgggcaaaatcagaaagcatttgatcttcaaactcttgggttcttctctgattgaaaatgagcttatcatcgccaa  5020700                                                              <----------DOF2                                                             <---------ANAC58                                                             <---------ANAC58 <-----------HVH21                           <---------------AGL15 --------->ARR14(2)                          --------------->AGL15 <---------ARR14(2)                         <-----------------AGL2                       <---------ANAC58 -------->ZAT2                              ----------------->AGL1               <---------ETT(2) --->P            <---------DAG2            ----------------->AGL2               --------->ETT(2) ->MYB46(1)   ----------------->AGL3 <---------ZAT6<---------------AtSPL8     <---------REM1(1) ->MYB83 --------->DAG2    <----------DOF2  ----------------->AGL3          <-------GAMYB<---------ANAC58 >NtERF2---------->DOF2 ---------->ID1 <---------MYB52(1)<----------DOF2   <-----------RAV1(1) -->DEAR3(1)  ===============================================MADS_MADS  --------->GLK1(2)<---------ANAC46   ccaggtccgataaagttccaatttttgttctttcgattactgttatgccaattttagtactttgcttttgctaaattctgttgtagacagtgcttgtagc  5020800                                                                                        <-------TEIL                <---------LBD16                                              ----------------->AGL1               <---------LBD16                                             <-----------GT1               ------>ZmHOX2a(1)      --------->ARR14(2)                <---------MYB46(3)         <-----------GT1              <---------ARR14(2)   <-----------RAV1(1)         --------->CCA1(2)     <---------ARR11(3)        <---------YAB1          <---------ATHB12 --------->MYB52(2)         <-  <---------HSFB2a(2)       --------->ARR14(2)   --------->ARR14(2) <------MYB46(1)   --------->ARR11(1)  --------->HSFB2a(2)       <---------ARR14(2)   <---------ARR14(2) <------MYB83  ---------->DOF2  --  <-----------RAV1(2)   <---------TOE2(3)     ------>ZmHOX2a(2)    <---------AtMYB61  --------->ARR11(3)   tcgtccagatgttactcctcgggattatcgtttccgattggatttggatcgaatcccatcaatgtgggattggtttgttacccaaaaagatacagtattg  5020900                                                --------->ATHB12                                          --------->ANAC55(2)                                          <---------ANAC55(2)                                       <---------MYB52(1)                                      --------->LBD16                                ------>ZmHOX2a(1)                             ------>ZmHOX2a(1) <---------YAB1                                       <                  <---------ANAC58   --------->HSFB2a(2)                                            -         <-------TEIL       <---------ALFIN1   --------->ICU4                                    <---      <---------HSFB2a(1) ------>ZmHOX2a(1)  <---------ICU4                                      ----      --------->HSFB2a(1)<---------ALFIN1<-------TEIL    <---------DAG2             <---------ARR14(2) --------ZAT2     <---------ANAC46   <---------HSFB2a(2) <----------DOF2            --------->ARR14(2) ------->ZAT2     <---------ANAC58  <---------LBD16   <---------YAB1    --------->ICU4     <--------P   ctgctcggaagttcgtagtggcttgctcctcctcctcttccggtacataatgatttatgctttttgatattgaaatgattttagtcgattcgggttacta  5021000                                                                                           <---------ANAC58                                                                                           <---------ANAC58   --------->ATHB12                                                                       <---------At4g35610  <---------YAB1                                                                        <---------ZAT18 ---------At4g35610                                    <-----------RAV1(1)         <---------ANAC58 -------->At4g35610                                   ------->TEIL                 <---------ANAC58 ------At4g35610      --------->AHL20(2)           <---------YAB1              <-----------GT1 ----->At4g35610      <---------AHL20(2) --------->ARR11(3)               <----------DOF2 <---------ZAT2   gctgctcattggaatgtcatatttttaattaagcctgagtttagatgttgagcatgaatgttgcccttgaaatgctctttttttcgcttgtgagcttgtg  5021100  Previous    Next  AGI:  At3g14920.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05480.1); similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) (PNGase A subunit B); Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A heavy chain (PNGase A large chain) (PNGase A subunit A)] (GB:P81898); similar to unnamed protein product [Vitis vinifera] (GB:CAO39400.1) Range:  from: 5018282    to: 5020280    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g14930.1    Description:  HEME1; uroporphyrinogen decarboxylase. similar to HEME2, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT2G40490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82689.1); contains InterPro domain Uroporphyrinogen decarboxylase HemE; (InterPro:IPR006361); contains InterPro domain Uroporphyrinogen decarboxylase (URO-D); (InterPro:IPR000257) Range:  from: 5020577    to: 5022966    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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