Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ---------->DOF2 --------->ANAC58                                                                 --------->AHL20(2) --------->ANAC46                                                                 <---------AHL20(2) --------->ANAC58<---------AtLEC2                                             <---------AHL20(2) ---->ZAT14     <-------TEIL                                                  --------->AHL20(2) ----DAG2     ------->MYC2                                                   --------->AHL20(2)  <--- -----DOF2    ------->MYC3                                                   <---------AHL20(1) <---- -->ANAC46    <-------MYC2            --------->AHL20(2)                     --------->AHL20(1) <---- ---GT1       <-------MYC3----------->GT1                   <---------ARR11(3)<---------YAB1  ------- -GT1--------->YAB1     ---------->DOF2          <---------TOE2(3)<---------YAB1 <---------YAB1 -----   tacacgataatatcaacgtgcatgggaaaagaaaaaccattaaaacaagttgagatagactaaatcttatgaattggaatataattaaagcatatgtata  4963800                  --------->KAN4(2)                 <---------KAN4(1)         ------>NtERF2                                                                             <-        --------->RAP2.6(2)                                                            --------->AHL20(1) ------AHL20(2)  --------->KAN4(1)                                   ----------->GT1   --------->AHL20(2) -----AHL20(1)   <----------TaMYB80                               ------>MYB46(1)      <---------AHL20(2) -----ARR11(3)  <---------KAN4(2)          --------->ARR11(3)     ------>MYB83        --------->AHL20(2) >TEIL --------->MYB46(3)                  <-----------GT1    >>>>>>>>>>MYB80     <---------AHL20(2) ---->ARR11(3)  ---------->TaMYB80      --------->YAB1    <---------ATHB12        --------->AHL20(2)   tatttcttagccaccaagaatataccaaaatatagactacaaaaataacttgatgtccaaatcaaaccaaattgtaaaatgtattaaaaaaaattagtca  4963900                                                                                                    <                                                                                                   --                                                                                                   --                                                                                         <---------AHL20(2)                                                                                         <---------ICU4                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                    <---------AHL20(1)                                                                                --------->YAB1     <-                                                                               <---------YAB1      <-                                                --------->YAB1                <-----------GT1 <------                                   <----------DOF2                           --------->YAB1 <--------                      <---------DAG2           <---------ATHB12           <---------ICU4<---------AHL20(2) ---------DOF2        <----------DOF2 --------------->AtSPL3 <---------------------WRI1 --------->AHL20(2)   tcttttttttttttgtaaaacaaacttttttagtcatctttcggtacaaatcatagatgagtagtcgatgtgttcaaaattatcattttatttattacca  4964000       ----------->GT1   <---------AHL20(2)  <---------YAB1 ---------------AGL15                                          ---------->DOF2 ------->AHL20(2)                                       <---------AHL20(2)                        <-- ------->AHL20(1)                                      <---------AHL20(1)                     <------MYB46(1) --------AHL20(1)                                      --------->AHL20(2)                     <------MYB83 --------AHL20(2)                                      <---------AHL20(2)                    -------- ---YAB1    --------->ICU4                             --------->AHL20(1)             ----------->GT1 ---GT1--------->YAB1 <-----------GT1                 --------->AHL20(2)         --------->ICU4  ----   ttttattaatggtaatttttgttctaactatttgtttagtttgaatgtgtgatgaaattaatttctaaagcgtagtagtagtagtaatgggtaatttggt  4964100                             ------->GAMYB  <---------ANAC58          <------------AtMYB77  <---------ANAC55(2)     --------->ARR14(2)  <---------ANAC46        <---------ARR14(2)  <---------ANAC58      --------->LBD16                                                         <----  --------->ANAC55(2)  --------->ANAC55(2)                                                --------->ZAT6 ----------CBF         --------->ANAC46 <-----------GT1                           <----------DOF2 ->MYB59    <---------ALFIN1<------------MYB.PH3(1)           *TSS    <---------TOE1(2)   <---------ALFIN1 ----->ATHB12         <---------LBD16<---------ICU4           <------------------------ANAC81   <----   cattgcgtagtctcccactggttctccgtaactgtctcaaaattactcatttgagacgctcattcgttttccttcgttccctctctttcttcacactcct  4964200                   ------>ZmHOX2a(2)                   ===============HOX2a_HOX2a         <-----------GT1      <---------AHL20(2)      --------->AHL20(2)     <---------AHL20(2)         ------>ZmHOX2a(1)                         <---------ZAT2          ---  <---------AHL20(2)       ------>ZmHOX2a(1)   <----------DOF2   --------->ARR14(2)              <--- <---------AHL20(2)====================HOX2a_HOX2a <-----------GT1        --------->ZAT2         ---- -----DAG2       <---------ARR11(3)     <-----------GT1          <---------ARR14(2)             <---- ------DOF2      --------->ARR11(3)    <-----------GT1           --------->KAN4(2)<-------TEIL  <----   ttttttatttatttccattgatctctctcctctcctcgatttttccctcctttaatccatctctgcatattcttcaagcttgggttcatcttcatcttga  4964300           <---------MYB52(1)        ------>ZmHOX2a(2)        <---------LBD16                                                                             <       <------ZmHOX2a(2)                                                  ------->TEIL              <      --------->ARR14(2)                                              --------------->AtSPL8       <-      <---------ARR14(2)                                              <---------------AtSPL3      <-- --->ZmHOX2a(2)        <----------DOF2                                <---------------AtSPL8      --- ------At4g35610 --------->ZAT18                                      --------------->AtSPL3      <-- ----->At4g35610 <---------ZAT18                                   <---------MYB52(1)             <-- -----ARR11(3)   --------->ZAT14                         <---------At4g35610                      <-- -----AGP1--------->LBD16    <----------DOF2             --------->At4g35610                <--------   tctgaatcgatccggtatgtgaactctttctctttccctcaattctctataaatctctaagctcaattcgttattgtacgtcttcgttctgcgtttgatg  4964400                                                                           ----------->GT1                                                                           --------->LBD16                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                    <---------------AGL15                                                                    --------------->AGL15                                                                   <-----------------AGL3     ------>ZmHOX2a(1)                                             <-----------------AGL1   ----------->RAV1(2)                                             <-----------------AGL2 <---------ARR14(2)                                               --------->At4g35610 <---------ARR11(1)                                               <---------At4g35610 --------->ARR14(2)                                            <---------At4g35610 ---------ARR14(1)                                             --------->At4g35610               <--- ---------CCA1(2)                                             <-----------RAV1(1)               <---- --------SPL7                                                ------>ZmHOX2a(2)                  ----- -------ANAC58                                              <---------At4g35610           --------->ARR14(2) ------>ANAC55(2)                                           <---------GLK1(1)          <---------ANAC58 -------ANAC58                       <---------ANAC58      <---------AGP1--------->TOE1(2)<---------ARR14(2) -------ANAC46                       <---------ANAC58      --------->ARR14(2)          <---------ANAC58 -------ANAC55(2)            <-------TEIL                  <---------ARR11(3)          <---------ANAC46 -MYB46(3)             <-----------GT1<----------DOF2      <---------ARR14(2)       <-----------GT1   ccgtatcctgaagtttttttttttttttcggttcatgatgctttctcatcgttttccactggatctgctgctaaatctgggaaattttagcgtatttgga  4964500                                      <---------DAG2                                      <----------DOF2                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)                                 <---------At4g35610                                 <------ZmHOX2a(2)                                <---------ARR11(3)                                <---------AGP1                                <---------ARR14(2)                                --------->ARR11(3)                                --------->AGP1                                --------->ARR14(2)                              ----------->ARR10                            ------>ZmHOX2a(2)                          <---------ARR14(2)                                                   <-----                          --------->ARR14(2)                                               <---------                          <---------AGP1                                                   ------>ZmHOX2a(1)         <-----------HVH21<---------ARR11(3)     <---------ANAC58                   <---------ANAC46    --------->REM1(1)     --------->ARR11(3)     <---------ANAC58                   <---------ANAC58 ------GLK1(1)         <---------HSFB2a(2)       --------------------->WRI1         <---------ANAC58 -----ARR14(2)         --------->HSFB2a(2)       --------->TOE2(3)             <---------REM1(1) ---->ARR14(2)        <---------LBD16 --------->TOE2(3)<---------ICU4    --------->YAB1 ---------->ID1   tttgctacatttgtcatacatacttctggatctagatctgccttattttttccttgatcatttcgaattttggattaatagttgtagcttgtccttttat  4964600                    <---------------AtSPL3                    <---------------AtSPL8                               <---------ARR14(2)                   >>>>>>>>>ARR2                             <---------ARR11(3)       <---------ZAT14     ------->TEIL --------->ATHB12                           <---------GLK1(2)        --------->REM1(2)    <---------GLK1(2)                                      ----------->ARR10 <---------At4g35610    <---------CCA1(2) <---------ZAT14         ----------->GT1--------->ARR11(3)    <---------ANAC46 ------GT1       <---------YAB1      --------->At5g28300<------ZmHOX2a(1)--------->ARR14(2) -DOF2         <----------DOF2      ----------->GT1 ---------->DOF2 <---------AtLEC2  --------->ZAT14   caattcgaatctcatgactttgattgtactgaatcacacagtgaaattttgtaaaaaaggatagatttttgaatggttctgcttagtgtgtagtctaact  4964700  Previous    Next  AGI:  At3g14790.1    Description:  RHM3 (RHAMNOSE BIOSYNTHESIS 3); catalytic. Identical to Probable rhamnose biosynthetic enzyme 3 (RHM3) [Arabidopsis Thaliana] (GB:Q9LH76); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-L-rhamnose synthase/ UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to hypothetical protein OsI_010699 [Oryza sativa (indica cultivar-group)] (GB:EAY89466.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39485.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59500.1); contains Int Range:  from: 4964162    to: 4967082    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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