Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                               ======                                                                                               ------                                                                                              <------ZmHOX2a(2)                                                                                              =======                                                                                              -------                                                                                             >>>>>>>>                                                      --------->ANAC55(1)                    >>>>>>>>                                                      --------->YAB1                         --------                                                   <---------ZAT18                           >>>>>>>> --------->ANAC46                                --------->At4g35610                         >>>>>>>> --------HVH21                                 --------->ANAC46                              <------- -->GAMYB                                     ---------->DOF2                                -------- ---->AtMYB61                         <----------DOF2 --------->ANAC46                      --------- ---->YAB1                          ------->TEIL <---------At4g35610                  --------->YAB1 --->MYB46(3)            <------ZmHOX2a(2)    <-------TEIL                          <-----------HVH21   atcacagaacacaattggattcaatggatcaccatctgtactttgacatacagcacacataatcccatcttcatcttctacttctctatcagagagatct  4952900  <----------DOF2               <----------DOF2 ------>DOF2          ------>ZmHOX2a(2) =========================HOX2a_HOX2a >ZmHOX2a(2)         <------ZmHOX2a(2) =========================HOX2a_HOX2a -->CCA1(2)         <---------ARR14(2) >GATA-1            --------->GLK1(2) >GATA-4            <---------AGP1 ->ARR11(3)         --------->ARR14(2) >GATA-2            <-----------ARR10--------->YAB1                                 <----------DOF2 >GATA-3            --------->ARR11(3)                                              <---------DAG2 --ARR11(3)         <---------ARR11(3)                                          --------->WRKY38(1) ->AGP1 <----------DOF2   <---------GLK1(2)                       <-------TEIL  --------->WRKY12  <-- >GLK1(1)          <------ZmHOX2a(1)<---------YAB1   --------->ZAT6          <---------ZAT6     -----   aaagcttttcctttccctagaggatctatattctctttatcatcatcttcttctacctctagactagattcaacatttagagttgactttttctcaattg  4953000                                                                           ==========================                                                                           <---------LBD16                                                                           ------>ZmHOX2a(2)    -----                                                                          <------ZmHOX2a(2)     <----                                                                         <---------ARR14(2)   ------>ZmHOX2a(2)                                                                         --------->ARR11(3)  <------ZmHOX2a(2)                                                                         <---------ARR11(3) <--------                                                                         --------->ARR14(2) <--------                                                                       ----------->ARR10    ---------                                                            --------->AtMYB61               ---------                                                            <---------ALFIN1                <--------                                                            --------->DEAR3(1)              ---------                                                --------->DAG2  --------->LBD16           -----------                                               --------->DAG2 <---------LBD16        ------->GAMYB                                              ---------->DOF2--------->MYB52(1)     --------->MYB46(3)                                           <----------ID1  <---------MYB55(2)     --------->WOX13(1)       ----------->RAV1(1)              --------->DAG2     --------->MYB46(3)   ===================== -------GLK1(1)       --------->ANAC46---------->DOF2   ----------------->AGL1  <------ZmHOX2a(2) ---->ATHB12 --------->DAG2        <------ZmHOX2a(2)    --------->MYB46(3)===========================   atttctcttcaacataaggcttatactctacatttagatcaaaaggcgaaaaggggttaccaccaccggagagaagatcgggatcaatcgcccagatcct  4953100                                                                                         <------NtERF2                                                                                        <---------RAP2.6(3)     <---------LBD16                                                                    ------>NtERF2 ==HOX2a_HOX2a                                                                          --------->LBD16 ->ZmHOX2a(1)                                                                           --------->ANAC58 ------DOF2                                                --------->YAB1               --------->ANAC58 -ARR14(2)                                                 <---------ICU4               --------->ANAC46 -GLK1(2)--------->SPL7                                 <---------ICU4                 --------->ATERF1(2) >AGP1  <------NtERF2<------MYB83                      --------->ICU4                  <---------ATERF1(2) >ARR11(3)           <------MYB46(1)         <-----------TGA1                         --------->RAP2.6(3) -ARR11(3)       --------->ATHB12           <---------bZIP60(1)                       <---------LBD16 >ARR14(2)       <--------ATHB1             --------->bZIP60(2)                   <----------DOF2  -- >ARR10--------->LBD16 --------->ALFIN1     --------->bZIP60(1)              ------>ZmHOX2a(1)------- ==HOX2a_HOX2a   --------->YAB1    <---------ZAT14   --------->YAB1    <---------At4g35610  --------- ==HOX2a_HOX2a  <---------YAB1   <---------GLK1(1) <-----------TGA1    --------->At4g35610  <--------   tttcttcgccggaagacaatgataggtgggattggagttctctgcgtcgtcatcgtcataatcaacacgagtctgcttcctcttctttgccggcaactgc  4953200                           <-----------RAV1(1)                          <---------ANAC58                         <---------At4g35610                         --------->ZAT2                         --------->At4g35610                        --------->MYB111(2)                        --------->MYB55(2)                        --------->MYB52(2)                       <--------P                      <---------MYB52(1)                     <------MYB46(1)                =====================================HOX2a_HOX2a                     <------MYB83                   ------>ZmHOX2a(2)                    --------->MYB46(2)             <------ZmHOX2a(2)                       ------>ZmHOX2a(2)                <---------DEAR3(2)                 --------->GLK1(1)                      <------ZmHOX2a(2)                --------->MYB55(2)                 <---------GLK1(1)                     --------->ARR11(3)                <------MYB83                      --------->ARR11(3)                     <---------AGP1                <------MYB46(1)                   <---------ARR11(3)                     <---------ARR14(2)                <---------MYB46(3)             <---------HSFB2a(2)                       --------->ARR14(2)               <---------MYB46(3)         <---------ZAT2                                 <---------ARR14(3)               <---------AtMYB61          --------->HSFC1(2)                             --------->ARR14(3)              <--------P<---------MYB46(3)--------->ZAT2                                 <---------ARR11(3)              <---------MYB52(1)          --------->At4g35610                          ----------->ARR10              <---------MYB55(1)  <-------GAMYB--------->HSFB2a(2)                     <-------TEIL          <---------LBD16<---------ZAT2   <---------At4g35610     --------->YAB1  <------ZmHOX2a(1) ------->MYB46(3)   --------->MYB59    <---------At4g35610        --------->TOE2(3)   <--------P >GAMYB<---------At4g35610<---------ANAC58<---------HSFC1(2)----------->RAV1(1)   ================HOX2a_HOX2a >At4g35610  <---------MYB52(1)<---------At4g35610<---------ARR14(3)     <----------DOF2<---------CCA1(2) -At4g35610  <-------GAMYB<---------ANAC46<---------HSFB2a(1)  ------->GAMYB      ===============HOX2a_HOX2a   aacgacttcatctccggttggttcggtagctggtgctgttgagcagcttcgagatctctctgcaacagtcttaatcttttgagaggaggtagatcttgat  4953300                                       <---------ANAC46                           --------->GLK1(1)                            --------->AHL20(2)                           <------ZmHOX2a(2)                  <---------LBD16                           <---------GLK1(1)                  <---------HSFB2a(2)                   -                          --------->ARR14(2)                 ------>ZmHOX2a(2)                      -                          --------->AGP1                    <------ZmHOX2a(2)                      --                          <---------ARR14(2)                <---------GLK1(1)                      --                          <---------AGP1                   --------->ARR14(2)                      --                          <---------ARR11(3)               <---------ARR11(3)                     <--                          --------->ARR11(3)               --------->ARR11(3)                     ---                         <---------CCA1(2) <---------AtLEC2<---------ARR14(2)                   -----                         <---------At4g35610               <---------AGP1---------->DOF2       <-----            <---------ANAC58  <---------LBD16     <---------HSFB2a(1)   <---------AHL20(2)  <--------            <---------ANAC58------>ZmHOX2a(2)    *TSS     <---------CCA1(2)           <------------CBF   attgagcatccatggcttcttagtttcagatctctgggtttgtgtgaatggaacagtcgtagatctcggagaaattaaaggcatgagaaattgatattta  4953400    <------------CBF ------------>CBF ----->NtERF2 -------->LBD16 ------->ANAC46 ------->ANAC58 ------->ANAC58          <<<<<<<<<CBP60g                                   <-----------------AGL2 -------LBD16            <<<<<<<<<SARD1                             <<<<<<<<<TBF1 ------>MYB46(3)   --------->ANAC46                             <-----------GT1               ------- --->P            --------->ZAT18                         <---------MYB52(1)                --------- ------GT1        <---------ZAT18                        --------->TOE2(3) <-----------------AGL3 -ICU4       <----------DOF2                            ----------->GT1<<<<<<<<<TBF1  <-------TEIL   cccgccaattgacttctttgtgcgccaaatttctgaaatttgttccgattttaaaatttcgttaattttcttcttcttctgtttttggttcatcaactga  4953500                           ----------->GT1                     --------->LBD16            --------->ALFIN1                     ------>NtERF2            <------MYB83                    --------->ANAC58          <------MYB46(1)                    --------->ANAC58         <---------DEAR3(1)                    --------->ANAC46         <---------AtMYB61                     --------->ARR11(3)                   <---------LBD16           --------->MYB111(2)          <-------TEIL              - >GAMYB            --------->MYB46(3)        --------->ALFIN1   <----------DOF2    <---------ARR11(3) >At4g35610     <-----------GT1  ---------->DOF2<---------AtMYB61     --------->MYB59               <   aactaaaattttagaattttacccgccaattgttaaaaagagcgagggaggtggtctcttatgggcctttattcggtccattgaagatgttaatgggctt  4953600                                             <----------DOF2                 <---------MYB46(3)       <---------ALFIN1                           --------->YAB1     --------->AHL20(2)           --------->ANAC55(2)                    <-----------HVH21     <---------AHL20(2)           <---------ANAC55(2)      <----------DOF2 --------->YAB1         --- -------->AHL20(2)            <---------ANAC58      <-----------RAV1(1) --------->WOX13(1)      ----- ---------AHL20(2)            <---------ANAC58     --------->ARR11(3)--------->GLK1(2)     <---------ZAT14   atttaaattaaaaaaactgtggtttccaagtttcttacttaacaacactttaatatgttggctttgttcacaatctatcagagactatcagagtatacaa  4953700                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                              <------NtERF2                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                         <---------AtMYB61         <----------DOF2                                        <---------DAG2           <-----------RAV1(1)    <---------At4g35610     <---------ANAC58              <---------ICU4              ------>ZmHOX2a(1)    --------->ATERF1(1)     <---------ANAC58            ------->TEIL               ---------->ID1----   <---------ATERF1(1)      <---------ANAC46       <----------DOF2              ------>ZmHOX2a(1)<--- ------>DAG2       <---------YAB1            <----------DOF2    <----------DOF2<---------ANAC58------ ----->DOF2<---------AHL20(2)             ------>NtERF2<---------CCA1(2)       <---------ANAC58<-----   aagggaggctgctttaatttcatgagagtcgcttgaaaaatgggcgactttgactttgaatcttgactttttcatcgatgtccttgtccttgtggtggcg  4953800  Previous    Next  AGI:  At3g14740.1    Description:  PHD finger family protein. similar to ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX), histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding [Arabidopsis thaliana] (TAIR:AT2G31650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39491.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 4952011    to: 4953349    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14750.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67170.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63248.1) Range:  from: 4953583    to: 4955663    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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