Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <-------TEIL       <---------ARR14(2)       --------->ARR14(2)       <---------GLK1(2) -------->CCA1(2) -------->GLK1(1)                      --------->ATHB12 ------->ARR11(3)                     <---------YAB1        <-----------HVH21 ------->ARR14(2)                   <---------ICU4      <---------ARR14(2)                          > --------ARR14(2)                   --------->YAB1      --------->ARR14(2)                  --------- ----ZmHOX2a(1)                  <------ZmHOX2a(1)   <---------ANAC58                      <---------ZAT2 -----TOE2(3)            --------->ALFIN1     ---------->DOF2       <-----------HVH21      --------->ZAT2 -----TOE1(3)  ----------->GT1   --------->YAB1      <---------ANAC58 <---------ANAC46  ----------->HVH21   ggatatacagattcagagggtgaacaagtggggaaggataatgactgagaaagaagcgtatcggtcactgtgtcatggattccatgggaagggacctggg  4941200                                                                   ------>ZmHOX2a(2)                                                                  --------->CCA1(2)                                                                  <------ZmHOX2a(2)                                                                 --------->ARR14(2)                                                                 --------->AGP1                   ---                                                                 <---------ARR14(2)               <--                                                                 <---------ARR11(3)              <---    --------->ANAC58                                             --------->ARR11(3)         ---------    --------->ANAC58                                            --------->GLK1(1)           --------- >>>>>>>>TBF1                                                   <---------GLK1(1)           --------- >TOE1(2)           <------ZmHOX2a(1)               <---------GLK1(2)<---------LBD16     <-------TEIL   aagaagaagcaagagaaacagaggaagaagcatgaagataagtcaaaacagatggaatcttcagagagatctgtggaaagaataagagaaattcatgcca  4941300                                                                  --------->AHL20(2)                                                             <---------ARR11(3)                   <--                                                         ---------->DOF2                <------MYB46(1) ------>ARR14(2)                                    --------->GLK1(2)             --------->AHL20(2) -------ARR14(2)                                --------->YAB1    <---------AHL20(2)    <------MYB83 ------CCA1(2)                                  --------->TOE2(3)--------->AHL20(2)    --------->MYB59 >ANAC46                  <---------ZAT6       <---------YAB1--------->ARR11(3)  <---------------AGL15 >ANAC58      <------------CBF         <----------DOF2--------->TOE2(3)   <---------ARR11(3)     <--- >ANAC58  ------>ZmHOX2a(1)--------->YAB1     <---------------------WRI1  --------->ARR11(3)     <---   tatccaagactccttacattgttctctagtcataaacttctctttgattacgataatctcaaagacatttaattaagaacttcataaatttggtattttg  4941400                                                     <-----------GT1                                                 <----------DOF2         --------->AHL20(2)                                           <---------ICU4                <---------AHL20(2) --------->YAB1                --------->ANAC46 <---------ANAC58        --------->AHL20(2) --------DOF2                  --------->REM1(1)<---------ANAC58    <---------YAB1        <---------TOE1(3) ------ANAC58                <-----------GT1<------------CBF      <-----------GT1         <---------TOE2(3) ------ANAC58  --------->ARR11(3)   <---------ANAC55(2)    ----------->TBP               --------->MYB52(1)   ctttgatattcttaagagttcttggatgtttttacatcacataaaacattgcttttcacctatatatgttaccatttattttggtataatctaacgtttt  4941500                <---------AHL20(2)                        ----------->HVH21                <---------AHL20(1)                       --------->LBD16                --------->AHL20(1)                      --------->LBD16               --------->YAB1                       ------->TEIL               --------->AHL20(2)            <---------YAB1         --------->ANAC58       <----------DOF2                       ------------>CBF       --------->ANAC58   tgcattcttctttggaattatattttggttttattagggaaacgattttcaatgcatcccgagacagagcaagcctgtttagttccatcttccaagaaga  4941600                                                 --------->ALFIN1                                         <---------ANAC58                          --------->At4g35610                                         <---------ANAC58                          ----------->RAV1(2)                                         <---------ANAC46                        --------->MYB46(3)                                     <---------ANAC58                    --------->At4g35610                                     <---------ANAC58                  <---------WRKY38(1)                 <----------DOF2    --------->ZAT2                     <---------WRKY45              --------->ARR11(3)    --------->At4g35610               <<<<<<<<<<WRKY11              <---------ARR11(3)    <---------At4g35610          --------->TOE2(3) <---------At4g35610      --------->ZAT14            --------->At4g35610           --------->ICU4   <---------At4g35610      <---------ZAT14            <---------At4g35610      --------->YAB1 <---------At4g35610 <-------   --------->CCA1(2)  <----------ID1<---------ZAT2  <---------MYB46(3)<<<<<<<<<<WRKY6    <---------At4g35610   ctaagctatgcagtgagaactttgaagacaaattcagcagcttgcttgagagtgttgttagcataattcttagtcaacttccaactgctgaagctgttag  4941700                                                                                              <------                                                                                      <---------GLK1(2)                                                                               ------>ZmHOX2a(2)                                                  <-----------GT1             <------ZmHOX2a(2)            ---------->DOF2                    --------->ARR14(2) ---------->DOF2--------->LBD16          <---------YAB1               <---------ICU4       <---------YAB1   --------->ARR14(2) --MYB52(1)--------->YAB1              --------->YAB1    <---------YAB1      <---------ARR14(2) <----   tacttctgtgttatcaaagtcatggaagaacatttggacaaacatcacagatttacattttgatgatacaaagcagagggatccgagtgattctcgattt  4941800                        ------>NtERF2                       --------->ETT(2)                      <------NtERF2                     <------MYB83                     <------MYB46(1)                    <---------DEAR3(1)                   <--------P                  <-------GAMYB                 <---------MYB46(3)                 --------->MYB55(2)                --------->ALFIN1                <---------AtMYB61              --------->ALFIN1         <---------ALFIN1            <---------ANAC58          <------NtERF2            <---------ANAC46          <---------At4g35610        --------->WRKY38(1)         <---------ZAT18        --------->WRKY12----------->RAV1(1)       <---------MYB52(1)<------NtERF2--------->LBD16 ----DOF2 <---------ANAC46          --------->ZAT18                     <---------ICU4              < -------GT1 <---------ANAC58     <---------GLK1(1)               ----------->GT1     <-----------ARR10   actgacttcgttgagcgtgtggttggcgacattggaagtccgcacattagcagtttctatctatgctctgttaatactttcgatgagactcttctcttct  4941900                                                               <------ZmHOX2a(2)                                                               ================================HOX2a_HOX2a                                                              --------->ARR11(3)                                                       <------ZmHOX2a(2)                ---------->DOF2                       --------->ARR11(3)                 <---------TOE1(2)       ---------->DOF2    --------->YAB1              <---------ARR11(3)         <---------DAG2     <---------YAB1  --------->ZAT18                 ------->GAMYB       <-----------GT1------>ZmHOX2a(1) ---------MYB46(3)   <---------ZAT18     <-----------HVH21    <---------ARR11(3) <----------DOF2   cgtggttatcaaaggtactaaagcgcaatcttcagagacttgttgtcacttgcaacgatctagagatcatcagtttttcttcactttttcctagttttgt  4942000                                                             <---------HSFB2a(2)                                                            <---------LBD16                                                    --------->LBD16                                                   --------->ANAC46                                                   --------->ANAC58                           --------->DAG2          --------->ANAC58                          ---------->DOF2       ------>NtERF2--------->HSFB2a(2)                      --------->SPL7            --------->PCF2                    <---------SPL7              <---------ATERF1(1)                              <---                    --------->LBD16           --------->At4g35610           --------->TOE2(3)    ----             <---------TOE1(3)                <---------At4g35610  --------->TOE1(3)             ----             <---------TOE2(3)               <---------RAP2.3(1)   --------->TOE2(3)             ---- <---------ANAC58  <---------ANAC46         <---------RAP2.6(2)  ------->TEIL           <------ZmHOX2a(1) <---------ANAC58 <------NtERF2            --------->RAP2.6(3)--------->LBD16------>ZmHOX2a(1)  <----   ttcgcttgtggagttaaggctccgtacaaaaagcattcttgacatttcggctcccgctattctcccgaaccttaagttccttagtctcgaggatgctaga  4942100  Previous    Next  AGI:  At3g14700.1    Description:  similar to SART-1 family protein [Arabidopsis thaliana] (TAIR:AT5G16780.1); similar to hypothetical protein OsJ_006675 [Oryza sativa (japonica cultivar-group)] (GB:EAZ23192.1); similar to Os02g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046936.1); similar to hypothetical protein OsI_007241 [Oryza sativa (indica cultivar-group)] (GB:EAY86008.1); contains InterPro domain SART-1 protein (InterPro:IPR005011) Range:  from: 4940325    to: 4941405    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g14710.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At3g14710 [Arabidopsis Thaliana] (GB:Q9LUC4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G26340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 4941552    to: 4943062    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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