Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------MYB46(3)                                                                 <------MYB46(1)                                                                 <------MYB83         --------->GLK1(2)                                      <---------AtMYB61 ----------->HVH21                                             <---------MYB52(1) -----TEIL                                                    ======================================= ----->CCA1(2)                                                <-------GAMYB ----->GLK1(2)                                               <-----------RAV1(1)   ================== ----->ARR14(1)                                              <---------MYB46(3)    <----------DOF2 ---->ARR11(1)                                     <---------ANAC55(1)        <-----------GT1      -- -----GLK1(2)                                      <---------ANAC55(2)    =========================== ---->ARR14(2)                                     <---------ANAC46       <----------DOF2  <---------CCA1(2) -----ARR14(2)                                     --------->ANAC55(2)    <---------DAG2 <---------MYB52(1) ---->ARR10 ----------->HVH21                   <---------MYB52(1)     <-----------GT1 <---------ANAC46   ttcgcgacaaggttctgacagcgtttaagttcggactgaacgacaacgctgttaagtgttcgactgttggtttttactttttactctttccgtttatcta  4939900            --------->PCF5          <------MYB46(1)          <------MYB83          <---------MYB46(3)         <---------AtMYB61         --------->ALFIN1       <-------GAMYB       <---------ANAC46      <---------DEAR3(2)      <---------MYB46(3)      --------->MYB55(2)     <---------ANAC46   <-----------HVH21  =============================bZIP_DOF              <----------DOF2  --------->bZIP60(1)                               <---------ANAC58  --------->O2                                      <---------ANAC58  <---------bZIP60(1)                         <----------DOF2  <---------TGA1a                            <---------ANAC58  =============MYC_MYB                 <---------AHL20(2)              --------->ATHB12  <---------O2                        --------->AHL20(2)              <---------AHL20(2)  --------->TGA1a                     <---------AHL20(2)              --------->AHL20(2) ===========MYC_MYB       ----------->GT1    <---------ANAC58         --------->AHL20(1)           -- ===========bZIP_DOF    ----------->GT1--------->ATHB12               <---------YAB1             ---- ------->ANAC46------>ZmHOX2a(1)      <---------AHL20(1)             --------->AHL20(2)        <<<<<< ===========bZIP_DOF<----------DOF2   --------->AHL20(1) ----------->GT1       ----------->GT1-------   aacgacgtcgggtggtcctgcgcttgaggtgaaaattcaatttattggctttgggcttgaggtgaattcaattttattggtttgtgaaaacatgtttaga  4940000 --------->HVH21                            --------->HSFB2a(2) ----->CCA1(2)                        <---------ARR11(3) <<<RAP2.2                            --------->ARR11(3) ---->ARR10     ------------------------>ANAC81          --------->ICU4      <----------DOF2   ------   tatgaccatgttttcaaaaaccaaaaaaactagacaaaaacatctcccagactattgcaatttttgacataaaactagtcttttctcaagttttatttgg  4940100                                           ----------------->AG                                      <---------YAB1                                   --------->GLK1(2) --------->ARR14(2)                           <------ZmHOX2a(2)         <---------ARR14(2)                          <---------AGP1   ==========================================================                          <---------ARR14(2)       --------->LBD16                          --------->ARR14(2)     <---------LBD16         <----------DOF2           --                          <-----------ARR10----------------->AGL1       <----------DOF2          ----                         <---------CCA1(2) <-----------------AGL1       <---------DAG2      ---------                         <---------ARR14(1)----------------->AGL2   <------MYB83           <-------TEIL             <----------DOF2------>ZmHOX2a(2)  <---------ARR14(2)   <------MYB46(1)     --------->At4g35610 ----->GT1   --------->TOE2(3)---------->DOF2  --------->ARR14(2) <--------P            <---------At4g35610   aaaaaaaaaaaactactttaatccatcggatctaaagtttctgattccaaatccggatagtttttctggttgggccttttgtaactggagagctacatgt  4940200                                            <---------YAB1                                          <---------ICU4                                            -                                          -------->ATHB1                                         ----                                         <---------AHL20(2)                                     -----                                         --------->ICU4                                         -----                                         --------->AHL20(2)                                     -----                                      <---------YAB1 ----------->GT1                    <---------AHL20(2)                                     <---------AHL20(2)                                 <---------AHL20(1)                                 <---------ZAT6<---------YAB1                           --------->AHL20(1) =============================MADS_MADS  <---------YAB1                          ------>ZmHOX2a(1)--- --------->GT1              --------->YAB1--------->YAB1                     <-----------GT1   ------ ------>DOF2               <---------YAB1--------->AHL20(1)            --------->YAB1   --------->AHL20(2) >REM1(1)     <---------------AGL15  --------->AHL20(2)             <----------DOF2    --------->YAB1   aaagtttaatagccttcccatttgagagaattatagtattaaaattattatgtttttgttaaaaaaactactttcatattttcctctaaatataatgcac  4940300           <---------ANAC58           <---------ANAC58           <---------ANAC46           --------->O2           <---------bZIP60(2)                       --------->ANAC58           <---------O2                        <---------ANAC58           ========================bZIP_DOF    <---------ANAC46           <---------TGA1a                     <---------ANAC58           --------->TGA1a                    <---------DEAR3(1)                  --------->AtMYB61         <---------TGA2(2)                   <---------ZAT14                    ------>NtERF2        ----------->HVH21                    --------->SPL7                    --------->RAP2.6(2)      ----------->RAV1(2)                  <-------PIF5                       --------->MYB46(3) <----------TaMYB80                        ------->MYC2                      --------->At4g35610 --------->TaMYB80                         <-------MYC3                     --------->ANAC46 ------->GT1             *TSS  <---------AHL20(2)    --------->ANAC58     --------->At4g35610 ---->ANAC58        <---------RAP2.6(2)    ------->MYC3                 <---------ICU4 ---->ANAC58       --------->RAP2.6(3)     <-------MYC2                 --------->YAB1              < ---->ANAC46    <---------ARR14(2)         ------->PIF5                <---------YAB1         <------ ------>At5g28300<---------GLK1(1)   <---------RAP2.6(2)               --------->ICU4      <---------ANAC58 ->TEIL ----------->TGA1<----------DOF2 <------------OsbHLH66        --------->YAB1        <---------ANAC58   ggtatataccctgacgtggatttcggcttttatttagtttcggctcgtgcggtgcaaggaaattcttctagtcatcatcagccaccaaaactggcttctc  4940400                                                                                                   <-                  --------->TOE1(3)                                                              <---             <---------WRKY38(1)                                                                -----            --------->WRKY18(1)                    <---------DAG2                               <----      <----------DOF2 ---------->DOF2              <----------DOF2      <---------WOX13(1)   <-------    <---------ZAT18------>ZmHOX2a(1)           <---------ZAT14        --------->ATHB12       <------- ---------ICU4--------->WOX13(1)               --------->ZAT14       <---------YAB1    <---------YAB1 -----------AGL1  --------->TOE2(3)   <---------YAB1               --------->ANAC55(2) <---------TOE2(3)   aattagggctcttggtcaatccttaaaagttctattgattttcatcgactacacttttttggcgaatttatgtgattgaagtggaatctaagattgaggt  4940500                                <---------TOE2(3)                                  <------MYB46(1)                                --------->DAG2                                     <------MYB83 ---------DOF2              --------->YAB1                                        --------->MYB59 ----TEIL                  <---------YAB1                                     <---------YAB1 ---->GLK1(2)            --------->YAB1      <---------AHL20(2)     --------->GLK1(1) -----ARR14(2)       <-------TEIL --------->ARR11(3) <---------YAB1 <---------GLK1(1) --TOE1(3)      --------->HSFB2a(2)       ----------->GT1         <------ZmHOX2a(1)----------->GT1  < --TOE2(3)      <---------HSFB2a(2)     ---------->DOF2 <---------YAB1        <---------TOE2(3)  ----   tctttgtggtcttcggttctcgatacatcatcataaggtattgaaagttaattttcttattcttgttaggatttctaactaagataggtcaaaatataac  4940600          --------->ARR14(2)          <---------ARR11(1)        <---------ARR11(3)          <---------ARR14(2)        --------->ARR11(3)          ------->TEIL            --------->ANAC58         <---------CCA1(2)        --------->ANAC58   ------>ZmHOX2a(2)         ----------->HVH21  <<<<<<<<<GATA-2            --------->TGA2(2)  <---------GLK1(1)         <-----------TGA1  <<<<<<<<<GATA-1           <-----------HVH21  <<<<<<<<<GATA-4          --------->ANAC46                                 <---------bZIP60(2)  <<<<<<<<<GATA-3          --------->ANAC55(2)                              <---------ANAC58  <------ZmHOX2a(2)        --------->ANAC58                                 <---------ANAC46 <---------AGP1            --------->ANAC55(1)             --------->At4g35610 <---------ARR11(3)        <---------ANAC55(2)        <---------CCA1(2)     <---------ANAC58   <----- --------->ARR11(3)        --------->ANAC58         --------->YAB1         <------NtERF2    <-------- ---------CCA1(2)         <-------TEIL       --------->ARR14(2)          --------->ALFIN1   --------- ----->TOE2(3)           <-----------GT1     <---------ARR14(2)      <---------LBD16       <---------YAB1   ctagatctctcgtatctctatctatatatacgtcacaaggtattgagaattcactcatagcttctgaatttcgcggtgtcgtgtttctgtctcatcatcg  4940700                                            <-------TEIL                                           --------->ARR14(1)                                           --------->CCA1(2)                                          --------->ARR11(1)                                          <---------ARR14(2)       ----------->GT1                <--   <---------YAB1                         <---------GLK1(2)--------->YAB1                         <-- ----LBD16 <---------ARR11(3)     --------->YAB1        --------->YAB1      <---------ICU4      <---- -ICU4 ---------->DOF2 ---------->DOF2    --------->ARR14(2)  --------->ARR11(3)                ----- >ATHB12   --------->ARR11(3)    <---------YAB1     <------ZmHOX2a(1)   <---------YAB1   ---------->DOF2   gggttttgataaagatgtctcagtccaaagtagctatgaaaaaagattcgatgaggaagaataagaaattggttataaatattgctctagataaagaagt  4940800  Previous    Next  AGI:  At3g14700.1    Description:  similar to SART-1 family protein [Arabidopsis thaliana] (TAIR:AT5G16780.1); similar to hypothetical protein OsJ_006675 [Oryza sativa (japonica cultivar-group)] (GB:EAZ23192.1); similar to Os02g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046936.1); similar to hypothetical protein OsI_007241 [Oryza sativa (indica cultivar-group)] (GB:EAY86008.1); contains InterPro domain SART-1 protein (InterPro:IPR005011) Range:  from: 4940325    to: 4941405    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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