Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ALFIN1                     <---------AtMYB61                                    --------->At4g35610                   --------->ALFIN1                                       <---------At4g35610                   <---------ANAC46                          ----------->ARR10                 <---------ANAC58                    <---------ARR14(2) --------->HSFB2a(2)  <-------             <-----------RAV1(2)                     --------->ARR14(2) <---------HSFB2a(2)  --------            <------ZmHOX2a(2)                    --------->YAB1--------->ARR11(3)       --------->TOE2(3)           --------->ARR14(2)                  --------->GLK1(2)--------->GLK1(2)     <------ZmHOX2a(2)           <---------ARR14(2)                --------->MYB46(3)<---------ARR11(3) <------ZmHOX2a(2) ------->ARR14(2)<---------ANAC58     --------->ARR11(3)     <---------TOE2(3)   --------->ARR11(3) -YAB1    <------ZmHOX2a(1)           <---------ARR11(3)  <---------MYB52(1)     <---------ARR11(3)   ggaaccgtaagaggatcaggggtgtggtcatgaaggtgaagatgtcaacaatctgaatccgttgagattttgtttcagaagaagatcgatccataatgtt  4910300                                                                     <---------HSFB2a(2)                                                                     --------->HSFB2a(2)                                                                   --------->At4g35610                                                                <<<<<<<<<TBF1                                                            <---------ARR11(3)   --------->ANAC55(2)                             <----------DOF2 <---------At4g35610 --YAB1                              --------->ZAT14        --------->ARR11(3) ->ICU4                              <---------ZAT14    ---------->DOF2            <---------ZAT6   tgtttacataatgtgtattgtctctagattacaaaacagtactgtatatgtttctttgaaaagttcttcttctgaaaacatactagtgtttgcattttca  4910400                 <---------AHL20(2)                          --------->YAB1                 <---------AHL20(1)                         <---------YAB1                         --                 --------->AHL20(2)                   --------->GLK1(2)                        ------             <---------AHL20(2)                    <---------ATHB12                      ----------->RAV1(2)         --------->AHL20(2)            --------->CCA1(2) <---------YAB1                <---------WRKY18(1)    <---------AHL20(2)            <---------At4g35610 ------->TEIL                    ----------->HVH21   aagaattttttttatataaaaaatttgcatttgtttagatgatacgaattcaaatgaatctgattataagctcatttagtaaatgtgtttgacctgaacc  4910500                                     ----------->GT1                                   <------NtERF2                                  ----------->RAV1(1)                                  ------>NtERF2                                 --------->ETT(2)                                 <---------ETT(2)    <---------AHL20(2)                                 --------->DEAR3(1)  --------->AHL20(2)                                 ----------->HVH21  --------->AHL20(2)           <---------AHL20(1)                                --------->RAP2.3(1) --------->AHL20(1)           --------->ARR11(3)                               <---------ATERF1(1)  <---------AHL20(1)  --------->At4g35610                           <---------WRKY18(1)      <---------AHL20(2)  --------->LBD16     >>>>>>>>>                          --------->WRKY38(1)  --------->AHL20(2)      --------->ANAC46    --------->ANAC58                          --------->WRKY12   ----------->GT1        -------->P   --------->AHL20(1)    --------->YAB1        ----------->HVH21 --------->DAG2         <-----------GT1<---------YAB1 --------->HVH21   <---------At4g35610     ---------->DOF2 -------->P --------->MYB46(3)   --------->ANAC58 --->MYB46(3)      --------->At4g35610--------->At5g28300 <-----------GT1        <---------ARR11(3)   actgactcataaaaacacttgagctcatttgaccggcgacagtaaaaaagtaaatttaatttacccgatttacccgctgcaaatatttttgtaacgccaa  4910600                ---------->DOF2               --------->AHL20(2)               <---------AHL20(2)              <---------YAB1            --------->YAB1                                 <---------STY1(1)            --------->ATHB51                             <------NtERF2            <--------HAHB4                              ------>NtERF2  ------>ZmHOX2a(1)           --------->ICU4             ---------->DOF2 --------->ATERF1(1)               --------->YAB1           --------->AHL20(2)    ---------->DOF2     <---------ATERF1(1)       --------->ARR14(2)         --------->YAB1       <------ZmHOX2a(1)    --------->RAP2.6(3) <----------DOF2<-----------TBP   --------->YAB1    ----------------->AGL1 ----------->RAV1(1)     ---------->ID1   <----------DOF2 >>>>>>>>LFY<---------ICU4  ----------->GT1--------->ZAT18 --------->STY1(1)   <---------ARR14(2)   tgtaatgagaagaataattaaaggcccaagtaggaaaaagaaaagcccacagagacggcccctagggtttgtcctttagagaaacctcttttatagtttt  4910700                 <---------At4g35610             <---------MYB52(1)          <------NtERF2         ------>NtERF2        --------->DEAR3(1)       --------->ERF1                                                                       <--------P       <---------ABI4(2)                                                                 --------->LBD16       --------->ATERF1(1)                                                              <---------ANAC46      <---------ATERF1(1)                                                         <------MYB83     --------->ANAC58                                                             <---------MYB46(3)     --------->ANAC58                                           ------>ZmHOX2a(2) <------MYB46(1)<---     --------->ANAC46<----------DOF2                          <---------ARR11(3) <---------AtMYB61    *TSS<---------ALFIN1                          --------->ATHB12    --------->LBD16   <---------LBD16    --------->At4g35610                           <---------MYB46(3) <---------ANAC46  <---------LBD16   ctcatgagcgccaccgtttagctcttttctctctgttttgctcttggctgattcgttggagcttgatctctccgtggaaatgggtggtttccgggtaagt  4910800                            --------->GLK1(2)                       <---------ANAC58                       <---------ANAC58                       <---------ANAC46                       --------->ANAC55(2)                                                <---------ARR14(2)                       <---------ANAC55(1)                                             <------NtERF2                       <---------ANAC55(2)                                            <---------LBD16                      <-------TEIL  --------->ARR14(2)              --------->YAB1   <---------DEAR3(1)                     --------->CCA1(2)               --------->CCA1(2)               <---------MYB46(3)                    <---------ARR14(2)              --------->ARR11(3)        --------->ZAT14                    --------->ARR14(2)              <---------ARR11(3)        <---------ZAT14          ----------------------->TaNAC69(2)        --------->ARR14(2)        <---------ZAT2       --   <----------DOF2 <------ZmHOX2a(1)<---------ARR14(2)            --------->GLK1(2)<-----------HVH21< --------GT1 --------->REM1(2) <---------ANAC46     <---------ARR14(2)        --------->ZAT2      <--   tacttctttagtctgtgtataggatacgtgattctgggtatttggacttctgaagatttgatttggagaatcatcaactgtgctcggtcggggatagtgt  4910900                                                                                                   <-                                                                                               ------                                                                                               <-----                                                                                             --------     <------ZmHOX2a(1)                                                                      ---------     --------->YAB1                                               <---------AHL20(2)       <---------LBD16    ----------->GT1                                               --------->AHL20(2)       <---------   <---------TOE2(3)                                             <---------AHL20(2)        ----------   <---------TOE1(3)                                          --------->AHL20(2)           <--------- ------->YAB1                             <----------DOF2   <---------MYB52(1)    ----------->GT1  <- ---------AHL20(2)  <---------GLK1(2)     <---------DAG2  ----------->GT1 ------->TEIL     <--------- -------YAB1      <---------YAB1       ------->TEIL  <-------TEIL--------->AHL20(2)      <-----------GT1   attataaggataaataggttctgattcgcttagaaagtatgaaactttttctatgtgcatccgttaaattaatatgaatttgaagtgtttatttccggat  4911000   <---------MYB46(3) -----MYB46(1)                                              <---------ICU4 --->ARR14(2)                                               --------->ATHB12 ----ARR14(2)                                              <---------YAB1 ->LBD16<---------ANAC46                                  --------->ARR11(3)      --------->ATHB12 >HSFB2a(2)                                               <---------ARR11(3)     <-------TEIL --------AGL2             --------->ATHB12               --------->YAB1      <---------TOE1(3)======= ------->AGL1            <---------YAB1               --------->YAB1  <--------HAHB4          ------>ZmHOX2a(1) --------AGL1          --------->YAB1        --------->ARR11(3)      <---------ATHB12         ======= -----MYB83            <------ZmHOX2a(1)<----------DOF2 --------->ICU4--------->YAB1         -------- --------AG    ------->TEIL <---------WOX13(1)     --------->HSFB2a(2)<---------ICU4         --------   ttggtttgttctgtatgaatctctaggatgattgttttagtgcttaatgtcttctaaaatgatcattgtgaatcattttaagcttcattagctatcctta  4911100        ------>ZmHOX2a(2)       <------ZmHOX2a(2)                                                  <---------TOE1(3)     <---------GLK1(1)                                              <---------ANAC46     --------->GLK1(1)                                        <---------MYB46(3)<-----------GT1 =============HOX2a_HOX2a                                     <-----------RAV1(1)                 <-- ==============HOX2a_HOX2a                          <------ZmHOX2a(1)     <---------TOE2(3) <-------- ->TOE2(3)       <---------ANAC58                  --------->ICU4 <---------At4g35610  <---------At4g35610 ->TOE1(3)       <---------ANAC58             <---------REM1(1)<---------At4g35610  ---------->DOF2   ggcccagagatcggtgttgtcttgtgactcactgagagagttgatatgatgtaaggattagggtctggtgctgtttaaggttttaccaaagctgatattt  4911200  Previous    Next  AGI:  At3g14595.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to unknown [Populus trichocarpa] (GB:ABK95219.1); contains domain PTHR10052 (PTHR10052); contains domain PTHR10052:SF2 (PTHR10052:SF2) Range:  from: 4908955    to: 4910483    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g14600.1    Description:  60S ribosomal protein L18A (RPL18aC). Identical to 60S ribosomal protein L18a-3 (RPL18AC) [Arabidopsis Thaliana] (GB:Q9LUD4;GB:Q8L9M5); similar to 60S ribosomal protein L18A (RPL18aB) [Arabidopsis thaliana] (TAIR:AT2G34480.1); similar to unknown [Populus trichocarpa] (GB:ABK93710.1); contains InterPro domain Ribosomal protein L18ae; (InterPro:IPR002670) Range:  from: 4910704    to: 4912180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version