Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <-----------RAV1(1)           ------>ZmHOX2a(1)         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------GLK1(2)                                           <-----------TGA1       <---------ARR14(2)                                          <-----------HVH21        ---------       <-----------ARR10     <---------HSFB2a(2)             <----------DOF2               --------->ICU4       --------->ARR14(2)    --------->HSFB2a(2)      <----------DOF2                      <---------ATHB12 ----------->HVH21     --------------->AGL15          <---------DAG2                     --------->GLK1(1)   gatgagacggatcctctcattgtcgctgtttttggaagacttgagcatgtctctcacttttggcttcatcgtcacttcaatctctcttgagaaatcatca  4865600                  <-----------GT1             <---------AHL20(2)            --------->AHL20(2)            <---------AHL20(2)                                     -------->ATHB1           <---------YAB1                                          --------->ATHB12         <--------HAHB4                                            <--------ATHB1         -------->ATHB1                                            <---------ICU4         --------->YAB1                                            --------->ATHB51         <---------ICU4                                           --------->ICU4         --------->AHL20(2)                                       <---------ATHB51         --------->ATHB51                                         <---------YAB1        --------->ICU4                                        ------>MYB83        <---------YAB1               --------->AHL20(2)       ------>MYB46(1)   ------>ZmHOX2a(1)         <---------AHL20(2)              ----------->RAV1(1)             -------- >YAB1  <---------ATHB51     --------->AHL20(2)            --------->MYB46(3)               <--------   aattcctacaattattaaatatacaatgcaatttataaaaaaaatcgttcatgttgtctgaaccaacaattattggggtcatcttgtgcttcttatatct  4865700                                                   --------->ALFIN1                                                --------->DAG2                                             ---------->DOF2                                       ------>ZmHOX2a(2)                                      <---------GLK1(1)                                      --------                                      <---------At4g35610                                    <-------                                      --------->At4g35610      --------->ZAT18               <-------     ---------->DOF2                  --------->GLK1(1)       --------->ALFIN1              <--------     <---------At5g28300   ---------->DOF2 --------->LBD16 --------->DAG2               <---------GLK1(2) ->ARR11(3)      <---------ANAC46    <---------ARR11(3)   ---------->DOF2               <---------ARR11(3) -CCA1(2) ----------->RAV1(1)        --------->ARR11(3)<----------ARF1           <----------DOF2   atctacttacagcgacatggaggggaacagaaaggaagtgatctccccaaagagtgggagaaaagtgtgccaagggacgactactttcaagattatcatt  4865800                                                                                <------ZmHOX2a(1)                                                                       <---------ATERF1(1)                                                            <---------ANAC58 --------->LBD16                                                         --------->ZAT18     ------>NtERF2                                                         <---------ZAT18  ------->GAMYB                         --------->ALFIN1         ---------->DOF2      --------->MYB52(1) ->YAB1          --------->DEAR3(1)            --------->ANAC58    --------->ANAC58              <--- --ICU4     ---------->DOF2             <---------DEAR3(2)  <---------ANAC58--------->DEAR3(1)  <---- -HAHB4     --------->MYB52(1)        <---------LBD16    <---------ZAT14 --------->DEAR3(1)     ----- -YAB1     ----------->HVH21<---------ANAC46   --------->ANAC58    --------->ANAC58---------->DOF2   actctcagtagccctaacgcagaccaagtggtgttgttttgccggtttcaaggaaagagtgtgcttgtgaagccaacgccgaggaaaaagagaggggttt  4865900                <---------ANAC58        <------NtERF2    <---------PCF2                                                                        <---------ICU4    <---------ANAC46                                                                   --------->AHL20(2) <---------ANAC46<-------GAMYB                                             --------->CCA1(2) --------->ALFIN1<----------DOF2              <---------ANAC58            --------->ARR11(1) <-----------RAV1(1) <---------YAB1           <---------ANAC46            --------->ARR11(3)    <---- ----GAMYB --------->ALFIN1 --------->AtMYB61 <---------ANAC58        ---------->DOF2  --------->YAB1 -----MYB46(3)  <---------ANAC58         <-----------RAV1(1) ----------->GT1<-------TEIL --------->ICU4 ---->MYB52(2) <-----------------------TaNAC69(2)           <---------TOE2(3)<-----------RAV1(2)-----   gttgtggggcagagaggggcgttatgaagaccaaaactcgttcttgttgcttccatattgttgatgtaaaaaaaaagatacaggcgaaataatatttaga  4866000                     <---------ARR11(3)                     --------->ARR14(2)                     <---------ARR14(2)            <---------YAB1--------->ALFIN1             <---------KAN4(1)                   --------->YAB1<---------O2         <---------YAB1                         <---------YAB1 --------->O2<---------AHL20(2) -----------AtSPL8   --------->ARR11(3)      <---------AHL20(2)<---------TGA1a                  ----- ---------->AtSPL3  <---------GLK1(1)        --------->AHL20(2)<---------ANAC46             ---------   ggtactctgttttgaatgttcgatatctgttccaaaatttgctctgttttattatgaaaccctagacgtggacgtttttaatggctgatttgaataaaaa  4866100                                  <---------AHL20(2)                                 <---------YAB1                            <---------AHL20(2)              <---------ANAC58                           <---------AHL20(1)               <---------ANAC46                           --------->AHL20(1)               <---------ANAC58                          <---------AHL20(2)     --------->LBD16                     <---------AHL20(2)                    ----------->GT1   <---------AHL20(2)<------------CBF             --------->AHL20(2)                  ------->TEIL<---------AHL20(2)<---------LBD16                     --------->AHL20(2) ------->CBF   --------->ANAC46 <---------AHL20(2)     <---------ICU4            --------->ATHB12 >YAB1  <-----------GT1 <-----------TBP        <---------LBD16                  <---------YAB1<------   caatataagttaactatacgaatcgtatatatatttttattttttttgaaccgggaaacattgcgagaaaaaatgttagacgatgatttaatttgataat  4866200                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                                          -----------                                                                                          <---------At4g35610                                                                                          --------->At4g35610                                                                                   ------>NtERF2 <---                                                                                <---------HSFC1(2)                                                                                <---------HSFB2a(1)                                                                                --------->ZAT2<------NtERF2                                ----------->GT1                                 <---------At4g35610                         <---------------AGL15                                  --------->At4g35610                  --------->AHL20(2)                      <---------YAB1        --------->HSFB2a(1)                  <---------AHL20(2)             ---------->DOF2                --------->HSFC1(2)                  <---------AHL20(1)            --------->YAB1               ---------->DOF2 ------>NtERF2 ---ICU4         --------->AHL20(2)            <---------YAB1       <---------AHL20(2)<---------SPL7   ttcatggggaatcgaagcattaaatttcttcacgaggtaaacagtgtttatcaaagtagtattgttgtattaaaaccctagaagctgccttccgctggcg  4866300                                                                               --------->MYB46(3)                                                                           ------------>CBF                                                                          --------->ANAC58                                                                          --------->ANAC46                                                                          --------->ANAC58 --------->TOE2(3)                                                                        ---------->DOF2  <---------ARR11(3) ----ANAC58                                                           <---------AHL20(2) --------->GLK1(2) ----ANAC46           <----------DOF2                                --------->AHL20(2)  --------->ARR11(3) ----ANAC58           <---------DAG2<---------ANAC58           --------->YAB1  <---------ATHB12     < >RAV1(2)--------->ATHB12 <---------YAB1      <---------ZAT18 --------->AHL20(2)--------->ATHB12  --- ----GAMYB         <-----------GT1  <---------ANAC58        --------->TOE2(3)--------->WOX13(1) -----   tttgaaatggatgatttgtttttactttatttttgttttcttgggctgggcacatatgtgaacattaaaaatttaaaagcaatcactggaaaatcttaga  4866400             *TSS             <---------WOX13(1)           --------->ATHB12          <---------YAB1     <---------AHL20(2)                                                            <---------YAB1    --------->AHL20(2)              --------->WOX13(1)                       ----------->GT1 <--------HAHB4                   <---------ATHB12                          <------ZmHOX2a(1)       < --------->ATHB12                --------->ANAC46                        <---------HSFB2a(2)        < <---------ICU4             --------->GLK1(2)                            --------->HSFB2a(2)  ------- --------->YAB1             <---------ARR14(2)                     <---------ARR11(3)        <------- ---------ATHB12   --------->AHL20(2)                              <---------ARR14(2)    <---------ANAC46 ------>WOX13(1)   <---------AHL20(2) <---------ATHB12             --------->ARR14(2)    <---------ANAC58 ------->CBF<------------CBF--------->ARR14(2)                     --------->ARR11(3)    <---------ANAC58   caatcatttaatatgattgaattaattgagaatccaaacaatcaatgttcaatctctatctctctagcagaacttcgaggagtttattatgggttgtatc  4866500  Previous    Next  AGI:  At3g14490.1    Description:  terpene synthase/cyclase family protein. similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G29410.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G32030.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G14520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68620.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpenoid synthase (InterPro:IPR008949); conta Range:  from: 4863638    to: 4865956    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14500.1    Description:  transposable element gene. similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to hypothetical protein MtrDRAFT_AC139526g2v1 [Medicago truncatula] (GB:ABE80133.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 4866413    to: 4866829    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version