Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                     <------NtERF2 --                                                                                     --------->LBD16<                                                                                     <---------ATERF1(1)                            ====================HOX2a_HOX2a                          ------>NtERF2 --                    --------->ZAT6                                                  --------->DEAR3(1)               =================================HOX2a_HOX2a                        --------->ATERF1(1)               ------>ZmHOX2a(2)                                                 <---------ALFIN1 ---               ==================HOX2a_HOX2a                                     --------->ANAC46 ---              <------ZmHOX2a(2)          <------ZmHOX2a(1)      <---------ANAC46 --------->DEAR3(1)--              --------->At4g35610      <---------TOE2(3)       --------->At4g35610--------->LBD16<---              ===================HOX2a_HOX2a               --------->O2         --------->SPL7   ----              ==================================HOX2a_HOX2a<---------O2        <---------ATERF1(1)---             --------->ARR14(2)   <---------RAP2.6(3) <---------ANAC58    <---------GLK1(1)      <---         --------->LBD16    <------ZmHOX2a(2)        <---------At4g35610  --------->GLK1(1)      ----         ------>NtERF2     <---------ARR14(2)    --------->ALFIN1----------->HVH21<---------ATERF1(1)       <---------LBD16     --------->ARR14(2)    <---------REM1(1)    --------->ANAC58   --------->SPL7 --->LBD16   <---------ARR14(2) ----------------->AGL1<---------ANAC58--------->ANAC58 <-----------HVH21 --LBD16<---------LBD16   <------ZmHOX2a(1)  <---------ANAC46  <---------At4g35610------>NtERF2 -----   agcaaaatttccggcgatctgaacactaggatcagccgttttaggaagcgggtgtagcttctcgtggctgacaaggaaaccctccgccgcgtccaacgct  4833200            --------->HSFB2a(2)        <----------DOF2      ------>NtERF2      --------->At4g35610      <---------At4g35610     --------->DEAR3(1)    --------->ATERF1(1)    <------NtERF2    --------->DEAR4(2)    --------->RAP2.3(1)   <---------ATERF1(1)   <---------RAP2.3(1)   ------>NtERF2   --------->ABI4(1)  <---------DEAR3(1)  --------->RAP2.3(3)  --------->RRTF1(2)  --------->ANAC46  --------->RAP2.3(2)  --------->RAP2.6(2)  <---------ALFIN1  --------->DEAR3(1)  <---------ATERF1(2)  --------->ATERF1(2)  --------->RRTF1(3) --------->ATERF1(1) --------->RRTF1(1) --------->DEAR4(2) --------->ERF1 --------->ORA47(2) --------->RAP2.3(1) --------->RAP2.6(1) <------NtERF2 -------->ABI4(1) ---------At4g35610 ----->NtERF2 ---------ATERF1(1) -------->At4g35610 ---------RAP2.3(1) -------->DREB2C(1) ------->DEAR3(1) --------ATERF1(2) ------->ATERF1(2) ---------DREB2C(1) ------->RAP2.3(2) ------>ERF1<---------HSFB2a(2)                                                     <---------ICU4 ------>ATERF1(1)                                                                  --------->ICU4 ------->RAP2.6(2)                      <---------GLK1(2)               <------NtERF2 ------ATERF1(1)                  <---------ZAT6                       --------->LBD16   <---------ANAC58 ----->At4g35610                <---------ANAC46  <----------DOF2     <---------ANAC58   <---------ANAC58 ------>RAP2.3(1)             <---------ZAT14    <---------ANAC58     <---------ANAC58   <---------ANAC46 ------At4g35610         <---------At4g35610<----------DOF2           <---------ANAC46<---------WOX13(1) -->NtERF2 <---------LBD16    --------->ZAT14    <---------ANAC58    <---------LBD16--------->ATHB12 ---->DEAR3(1)        <-------TEIL<-----------RAV1(1)         <<<<<<<<<<<<<<<<<LFY <---------YAB1   gccgccgccgctctctggaacaaattcatctgtttagtgttggattctttggctttgggcttaacaacaatggcgggagagtttgatgattgcttaggga  4833300                                                     --------->ANAC58                                                     --------->ANAC58                                            <---------TGA1a                                            --------->TGA1a                                            <---------ANAC58                                            <---------ANAC46                                            --------->ANAC55(2)                                            <---------ANAC55(1)               --------->ALFIN1             <---------ANAC58               <---------ZAT6               <---------ANAC55(2)                        <---------TGA1a             <---------ANAC46               <---------O2                               ==============            <------ZmHOX2a(1)          <---------At4g35610                             ==============       --------->ALFIN1                --------->At4g35610                    --------->YAB1       --     --------->At4g35610  --------->At4g35610   ----------->HVH21            --------->REM1(1)     <-     --------->ZAT2       <---------At4g35610  <-----------HVH21         --------->At4g35610    <----    --------->ARR11(3)  <-----------RAV1(2) --------->O2               <------ZmHOX2a(1)    <------NtERF2   aatgaagagctggaggagtgtgaagcgcagatgaaacattgagcttacgtgtgacacgactggccataggtaaggagctacaataactcaagtcggagct  4833400                 <---------ZAT2                 <------NtERF2                 --------->ATERF1(1)                 --------->At4g35610                 --------->ZAT2                 <-------GAMYB                 <---------At4g35610                ------>NtERF2                <---------MYB46(3)                <---------ERF1                <---------RAP2.3(1)               <---------RRTF1(3)               <---------ANAC46                                     ----------->HVH21               --------->ATERF1(2)                          <---------MYB46(3)               <---------ANAC58                    --------->ARR14(2)               <---------DREB2C(2)              --------->LBD16    --------->At5g28300               <---------RAP2.3(2)              --------->ANAC46   --------->LBD16               <---------RAP2.3(3)   ------>MYB46(1)      <---------At4g35610               <---------RAP2.6(2)   --------->ANAC58     ------>NtERF2               <---------ATERF1(2)   ------>MYB83 ---------->DOF2 <---------ANAC58               <---------ANAC58      --------->ANAC46    --------->DEAR3(1)               <---------RRTF1(2)    --------->ANAC58   --------->ERF1     --------->ANAC58          <---------ICU4    <---------WOX13(1) --------->HSFB2a(2)<---------ANAC46 ========================MYC_MYB   <---------ALFIN1<---------ARR14(2) ---------->DOF2 ======bZIP_DOF<---------DEAR3(1)  --------->AtMYB61   --------->At4g35610 --------->ANAC58        -- ------->HSFB2a(2)        --------->ATHB12--------->At4g35610 --------->ATERF1(1)                  <- --------HSFB2a(2)       <---------YAB1   <---------At4g35610 <---------MYB52(1)                  <-- ------DOF2   --------->RAP2.6(3)------>NtERF2 <---------HSFB2a(2)<---------ANAC58              -----   ttgagaagacgataatggcggctgagtatgattgccaccaagccatctcccagaaaccgcagccgttgccgtgaaagaagccatttttcaagtgtgttca  4833500           <-------GAMYB          <---------MYB46(3)          --------->MYB55(2)       <------MYB83       <------MYB46(1)      --------->MYB111(1)   --------->ARR14(2)                                            <---------HSFB2a(2)   <---------ARR14(2)                                            --------->HSFB2a(2)              <-- ------->YAB1                                              --------------->AGL15                  <-- --------ICU4  <---------TOE1(3)                  <---------MYB52(1)                              <-- -------ATHB12 <---------TOE2(3)        ---------->DOF2    <---------------AGL15                 <--- ---->WOX13(1)---------->DOF2      <---------ANAC46     <-----------GT1    <------ZmHOX2a(1)    <----   atcagtatttggtggttaaagtaagttcgattttgagatgtgtaaaggctctgttttttttcttcttgtagaagagaggagagaagagagaagagagagt  4833600                                                                                    <-------MYC2                                                                                    ------->MYC2                                                                                    <-------PIF5                                                                                    <-------MYC3                                                                                    ------->MYC4                                                         ====================================bZIP_DOF                                                <------MYB46(1)                     <-------MYC4                                                <------MYB83                       <---------O2                                               --------->MYB59                     --------->O2                                              <---------ANAC46         <---------ATHB12                                            --------->ZAT2         ------>ZmHOX2a(2)------->PIF5                                            <---------ZAT2        <------ZmHOX2a(2)==================                                            <------MYB46(1)      <---------PCF2    <---------TGA1a                                            <------MYB83 ---------->DOF2           --------->TGA1a                                           --------->ALFIN1--------->DAG2  --------->ALFIN1                                           <---------AtMYB61     <---------ARR14(2)<--------ABF1                                           <---------DEAR3(1)  <---------MYB46(3)  <---------ANAC55(2)                                        --------->LBD16 <------ZmHOX2a(1)  <-----------RAV1(1) ----MYB83                    <-----------TBP --------->ALFIN1--------->ALFIN1     --------->ANAC55(2) ----MYB46(1)             ----------->GT1<---------MYB52(1)<---------AtMYB61     <------------OsbHLH66 -------MYB46(3)     ----------->HVH21 <---------LBD16  =================HOX2a_HOX2a------->MYC3----- ------AtMYB61     <---------ANAC46   <---------LBD16   ==================HOX2a_HOX2a--------->ALFIN1 ----P*TSS      --------->ALFIN1----------->TBP<---------MYB46(3)--------->ARR14(2)<---------ANAC46   tggtttgagagcgatgaagtgttgtgaagggtttatataaaccgggaggtgggtaagaggaaaggtggatcccatcagtgtggccacgtgttgaatcagt  4833700                        <-------GAMYB                        <---------ANAC46                       <------MYB46(1)                                                           <---               <---------ANAC46                                          --------->DAG2        ------               <---------ANAC58                                 <----------ID1                -------  ---------->DOF2 --------->ATHB12                <----------DOF2       ---------->DOF2  ----------->GT1 ============bZIP_DOF  <------MYB83      ---------->DOF2        ----------->GT1 <---------ZAT6<------ ------>HVH21  <---------ANAC58       --------->AHL20(2)      ---------->DOF2   --------->ALFIN1 <---   gacagaaagagggaatggagtgagtgggttatagagggaattaaaaagggtactttgggaaaaaaaaagaaaaaaaaagggagtgtgagtaatgttatta  4833800                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                              <---------RAP2.6(2) ------TOE2(3)                                                  <----------DOF2  <---------ANAC58   - --->YAB1                                                <-----------GT1    <-----------RAV1(1)     - -->ICU4              <----------DOF2                 <----------DOF2 <----------DOF2        -------- ---YAB1           <---------ARR11(3)       <---------ALFIN1    <---------MYB52(1)           <------- ------YAB1        --------->ARR11(3)   <-------TEIL<---------ATHB12---------->ID1           <-------   tggttcaaagttgagacttgagacctttcacacttagacaaatgcatcacttcaatctttaactccctttgtctttttttgtggcttcttctgtttctaa  4833900           <---------HSFC1(2)           --------->HSFC1(2)        ---------->DOF2 ----------->GT1 <------MYB83 <------MYB46(1)                            <---------GLK1(2) -------->AGL15                       <---------GLK1(1) ---------AGL15                       --------->GLK1(1) ----------AGL3                      <---------ARR11(3) -------->MYB46(2)                   --------->ARR11(3) -------->MYB59                      <---------ARR14(2) --------->AGL3                      --------->ARR14(2)           --------->ARR14(2)          ------- ----------AGL2                     <------ZmHOX2a(1)             --------->ZAT14       <---------HSFB2a(2) ----------AGL1                   <---------TOE2(3)     ----------->GT1                 --------->HSFB2a(2)   gtttggtaacaaaagcttccaattctttggcaacttgaggatatcaaattctctaatctagtaaaatgtatactcttgagtttgagggttcgagacatta  4834000                                        --------->At4g35610                      --------->GLK1(1)                                 <-------GAMYB                                   <---------GLK1(1)                      --------->GLK1(1) <---------At4g35610                 <---------ZAT14    ------       <---------ANAC58      <-----------GT1                       <---------HSFB2a(2)        <------       <---------ANAC58   <----------DOF2         <---------ANAC55(1)       --------->ZAT14 --------- -->ICU4        <---------ZAT6<---------At5g28300 <---------ANAC46 --------->HSFB2a(2)    <------ZmHOX2a(2)   tgaggcattgtttgtctagtggtgatttcttttaccgttgtaagatgaagttaagtgtattgaaattttctaaaacagttcagaattcttcgatcaatca  4834100  Previous    Next  AGI:  At3g14440.1    Description:  NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3). Identical to 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplast precursor (NCED3) [Arabidopsis Thaliana] (GB:Q9LRR7;GB:Q93ZU5); similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT4G18350.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to 9-cis-epoxycarotenoid dioxygenase [Brassica rapa subsp. pekinensis] (GB:AAV35466.1); similar to 9-cis-epoxycarotenoid dioxygenase [Raphanus sativus] (GB:BAF42 Range:  from: 4831295    to: 4833606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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