Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>MYB83                                          ------>MYB46(1)    --------->LBD16                     --------->MYB46(3)   --------->HSFB2a(2)                  <---------MYB55(2)   --------->ANAC46                    --------->ANAC46                                    --------->ARR14(2)   <---------HSFB2a(2)                 --------->ANAC58                               --------->At4g35610   --------->LBD16                     --------->ANAC58                            --------->At4g35610  --------->HSFB2a(2)     --------->GLK1(2)                                        --------->ZAT2  <---------LBD16         --------->ARR11(3)                                       <---------At4g35610  <---------HSFB2a(2)     <---------ARR11(3)                                      ------->GAMYB -->ARR11(3)   --------->ZAT14      <---------ZAT18                            <-----------GT1  ----- -->GLK1(2)    <---------ZAT14      --------->ZAT14                 <---------CCA1(2)--------->RAP2.6(2)   tgttcccggaaaactagtatagtcagaaaatcttacattgcacccaacttccacaatccaaacacagttcaaatcttatattaacagcagccaaaacctc  4821100                   --------->ZAT18                ---------->DOF2          -------->P        <---------MYB111(1)                           <------ZmHOX2a(1)            --------->TOE2(3)       --------->STY1(2)              <------ZmHOX2a(1)---------->DOF2             <---------MYB59       <---------STY1(2)---------->DOF2             <---------TOE2(3)            <---------ARR11(3) ---->MYB52(1)---------->DOF2   <---------YAB1      <---------TOE1(3)      <-----------GT1   >>>>>>>>   acagaaactagctaccaaaagagcacaaaagaatactataggagaactcagattaaggaaagacaggtttgtgagatttacaataccttattgaagaaga  4821200                                                                         --------->ARR14(2)                                                           --------->AHL20(1)                                                           <---------AHL20(2)                                                           --------->AHL20(2)                         <---------At4g35610              <---------AHL20(2)                         <---------ZAT2                   --------->AHL20(2)                        <-----------RAV1(1)              --------->AHL20(2)                       <--                    <----------DOF2                      <---------AHL20(1)         -----------------               ------>ZmHOX2a(1)                --------->DAG2           <---------ARR14(2)       <--              --------->TOE2(3)     <---------ICU4      --------->YAB1--------->ANAC58          ----- >TBF1 <---------ARR14(2)--------->ZAT2        ---------->DOF2        --------->ANAC58        <------   atgtaagcgaattcatccttcactttgtgctgggctaagtattgcatcgaaaagcccaaaataatttggctcacgaattcgaaactcttggatttatgca  4821300                                                                                                   --                                                                                                 ----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                            ---------                         <------MYB46(1)                                               --------->ANAC46 --------DOF2            <------MYB83                                   <---------ANAC55(2) --------- ------>TaNAC69(2)   --------->ATHB12                            --------->YAB1   --------->ARR11(3) -------DAG2 ----------->GT1                                    ----------->GT1   --------->GLK1(2)-- -->TEIL     <----------ID1                                    <---------------------WRI1   <-------- ---ZAT18  ---------->DOF2                          --------->ANAC46--------->YAB1<---------ARR11(3)-   cttttctgaaaaaaaaagaaaaacgattggtttacgaattactactatttttctacgagattaagaacgataatatgtaagaaaaatctaagacacacac  4821400       --------->ARR11(3)       <---------GLK1(2)    <XXXXXXXXXXXXXXXXXXXXMIR837-3P --------->WOX13(1) ---->MYB83              ------>ZmHOX2a(1) ----->AtMYB61      --------->GLK1(1) -->ANAC46         ------->TEIL -->ANAC58         <---------ARR11(1) -->ANAC58         <-----------ARR10 >ANAC58           --------->ARR14(2) >ANAC58           <---------ARR14(2) ---->MYB46(1)    <---------ARR14(1)          <---------GLK1(2)       ------------>CBF           ---- -ALFIN1      ---------->ID1                 <---------At4g35610   <----------DOF2          --------- -------->MYB46(3)<---------CCA1(2)          <---------ZAT2    <----------DOF2            <---------At4g35610   catccatcagatttttgtccgtatctcctcatcaattcttcacctccagcttctcatccatatttctttctttccaatgcaaacaagttttcaactgtta  4821500                               --------->WOX13(1)                              *TSS--------->YAB1                          <---------AHL20(2)             ------>MYB46(1)                          --------->AHL20(2)        <-----------GT1                         <---------ATHB12       <----------DOF2                               ------>ZmHOX2a(1)                       --------->WOX13(1)    <-----------GT1                   <---------AHL20(2) ---                     ------------>CBF       <-----------GT1              --------->CCA1(2)   <-------                   --------->ANAC58         <---------AHL20(2)          --------->ARR11(3)   <------- ------>DOF2       --------->ANAC58     --------->ICU4   ------>MYB83   <---------ARR11(3)  --------- -->GT1            --------->ANAC46     --------->AHL20(2) --------->AHL20(2) --------->AHL20(2)-----   aaagataaaccaaaaactcacaagccaattaatctatcagaaatatttaacttttaaccaaataaaaacgttgagatatatataatataagcgttcctta  4821600        --------->ANAC46                                  <---------At4g35610    <---------ALFIN1                                --------->GLK1(2) ------>ZAT6             --------->GLK1(1)         <---------GLK1(2)                        <-------TEIL --ANAC58           --------->LBD16          --------->ALFIN1                            <---------ANAC58 --ANAC58    <---------CCA1(2)             --------->ALFIN1                              <---------ANAC46 >MYB52(2)   <---------At4g35610           <---------ANAC46              ---------->DOF2 <---------ANAC58 --->P<---------ALFIN1--------->LBD16<---------ATHB12     --------->At4g35610   <---------GLK1(2)   ccactcacacacttcatctctccccagagctctattcccatcaaggtgtgtgagattctctgctaagacaaaccaaaaaccagattgttttgcgttcatg  4821700                                                                                      >>>>>>>>>WRKY18                                                                         <---------DAG2                                <---------YAB1               <---------MYB59 <-----------GT1                     <---------GLK1(2)                      <---------At4g35610      ----------->HVH21          <---------LBD16  <---------TOE1(2)                --------->At4g35610   <----------DOF2       ------>ZmHOX2a(1)--------->YAB1                    <--------P     <----------DOF2            <   gacatgttcctctctggagattagaatcgtagctatgactatgtctgaatttcacaagaggtagctaactcaggcctttttgctcttttgacagaaacac  4821800                                                                   <---------------AtSPL3                                                                   <---------------AtSPL8                                                         ------>NtERF2                         <---------DOF5.7(2)          --------->ZAT2                       --------->DOF5.7(2)            --------->At4g35610                    <---------TOE2(3)                 <---------At4g35610                     <------                    <---------TOE1(3)                 --------->HSFC1(2)                      -------                   --------->MYB52(1)                 --------->HSFB2a(1)                  <---------ZAT18              <------ZmHOX2a(2)                       <---------HSFC1(2)               <-----------RAV1(1)             --------->ARR11(3)                       <---------HSFB2a(1)            <---------At4g35610             <---------ARR11(3)  <---------YAB1      --------->GLK1(2) --------->SPL7----------->RAV1(2)            <---------GLK1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------SPL7 ------->TEIL ---------LBD16  <---------MYB52(2)          ---------->DOF2       --------------->AtSPL8  --------->ZAT18   acttcggaagatggagatcactaacgttaccgagtatgatgcaatcgcaaagcagaagctgcctaagatggtgtacgactactatgcatctggtgcagaa  4821900                                           ------>ZmHOX2a(1)                                       <---------ARR11(3)                                       --------->ARR14(2)                                       --------->ARR11(3)                                       <---------ARR14(2)                                    --------->ANAC58                                    --------->ANAC58                     --------->ANAC58           <                                  <---------AtLEC2     <----------DOF2   --------->ANAC58         <--                             <----------DOF2        <-----------GT1--------->SPL7       --------->ATHB12 --------->MYB52(1)    <---------ARR14(2) --------->TOE1(2)     <---------ANAC58       <---------YAB1 ---At4g35610          --------->ARR14(2)------>ZmHOX2a(2)      <---------ANAC58     <---------MYB46(3) -->At4g35610          <---------GLK1(2)<------ZmHOX2a(2)   <----------DOF2        <---------MYB52(1)   gaccaatggactcttcaagagaacagaaacgcttttgcaaggatcctgtgagtttttcttttcttttcgtaagacaagaaatactgtttgttattggttt  4822000  Previous    Next  AGI:  At3g14415.1    Description:  (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative. Identical to Probable peroxisomal [Arabidopsis Thaliana] (GB:Q9LRS0); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.1); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.3); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxid Range:  from: 4818305    to: 4821013    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g14420.1    Description:  (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative. Identical to Probable peroxisomal [Arabidopsis Thaliana] (GB:Q9LRR9;GB:Q8VZA4;GB:Q944K6); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14415.1); similar to glycolate oxidase [Brassica napus] (GB:AAV28535.1); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase, active site; (InterPro:IPR008259); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase Range:  from: 4821530    to: 4824185    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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