Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ANAC58                                                                                    --------->ANAC46                                                   --------->LBD16         ------>ZmHOX2a(2)                                                   ------>NtERF2         <---------ARR11(3)                                                  --------->ANAC58       --------->ARR11(3)                        <---------At4g35610       --------->ANAC58     <---------YAB1      ----------                        --------->ZAT2            --------->ANAC46   --------->YAB1 --------->ANAC55(2)                --------->ANAC55(2)              ------>ZmHOX2a(2)--------->YAB1    <---------ANAC55(2)                --------->ANAC58                 --------->MYB46(3) <---------YAB1  --------->ANAC58                --------->ANAC58---------->DOF2 <------ZmHOX2a(2) <--------HAHB4   <---------LBD16                <---------ANAC55(2)            --------->ARR14(2) <---------ICU4  --------->MYB52(1)            <-----------HVH21--------->YAB1    <---------ARR14(2)<---------YAB1<---------At4g35610       --------->YAB1   --------->At4g35610  ----------->ARR10   --------->ICU4--------->At4g35610   agaatgtaagcataggtcacgaattcagctctcataaagcctttgctccgatccgccattgaaaccgattattatgatctcagattacggaataaaagtt  4817900                      <---------DAG2        <----------DOF2     <---------ZAT14                      <----------DOF2    <-----------GT1       ------>ZmHOX2a(1)       *TSS                   --------->ZAT6       ---------->ID1         <-----------HVH21<---------DAG2                 <-----------GT1  <----------DOF2    --------->YAB1             <----------DOF2 >DOF2        --------->ANAC55(2) <---------DAG2    <---------ATHB12         <-----------GT1   gtcgcttctggtttttatgtaacacttttccgagtgctttttgtttcttttccaatcgtcttctccttcactgagtatttcactttcccatcttctcaaa  4818000                                                    <---------AHL20(2)                                                    <---------YAB1                                                    --------->AHL20(2)                                                 <----------DOF2                                           <---------TCP15(1)                                           <---------TCP20                                          --------->TCP15(1)                                          --------->TCP20                                         <---------TCP15(2)                                         <------MYB46(1)                                        <---------MYB46(3)                                 <----------DOF2 <---------DAG2                                <-----------------AGL3                    ----------->HVH21  --------->ALFIN1<---------YAB1        --------->At4g35610 ----------->STF1  <---------ALFIN1                                      -      --------->MYB46(3)  ----------->HVH21--------->PCF2    ------>ZmHOX2a(1)             ----------    ----------->RAV1(1)   ----------->TGA1<---------PCF2 <-----------GT1      <----------DOF2       <   --------->MYB46(3)  <---------DEAR3(1)<------MYB83<-----------GT1  <---------AHL20(2)  <---------AHL20(2)   tttcaacaacagctaaataagagcgacggtgacgactttaagtgggtcccactttttattatcctctctcattttatgggcttttctcacatttaaagcc  4818100                 --------->ANAC58                 --------->ANAC58                 --------->ANAC46         ----------->GT1         <---------ANAC46             --------->ANAC58         <------MYB46(1)              --------->ANAC58         <------MYB83               ---------->DOF2<------MYB83    <-----------RAV1(1)            --------->WRKY18(1)              <---------DAG2           <------- -------->ARR14(2)                <-----------HVH21<------MYB46(1)  <----------DOF2         --------- >DOF2<---------MYB52(1)         <---------ANAC46 --------->MYB59<---------ALFIN1     --------->YAB1 ---------ARR14(2)          <---------YAB1     ------->TEIL     <---------ZAT18      <-------TEIL   caaatactgttgggtttataagctattgttatgtttcgtcaagcccatgaatttggttctacctcgcacacttttttttgtttcagtttcatcatccacc  4818200                                    <---------ANAC55(2)                               <---------ICU4                               -------->ATHB1                              --------->ICU4                              --------->AHL20(1)                                                 <---                         --------->YAB1        <---------HSFB2a(2)                      --------->ANAC58                 ---------->DOF2    --------->ANAC55(2)         --------->YAB1   --------->ANAC58<---               --------->YAB1 --------->AHL20(2)           <---------------------WRI1   --------->ANAC58   <---------GLK1(1)    ----------->GT1   <---------AHL20(2) --------->YAB1      --------->ANAC58<--- --ALFIN1     <---------ATHB12<---------YAB1   --------->HSFB2a(2)    ---------->DOF2   --------->ANAC46 >MYB46(3)------------>CBF    <---------AHL20(2)    <------------CBF<---------YAB1 <------ZmHOX2a(1)   cttggatatatgtccaatgaaaagaaatgaaaattattaagtattttttctcgagattgtgaacgataatatgaaagaaatgtaaggaacacacaagttg  4818300                                                                                                   <-                                              --------->MYB46(3)                                   --                                           --------->MYB46(3)                                      <-                                     --------->GLK1(1)                                          -----                                     --------->At4g35610                                        <----                                    <-----------ARR10                                           -----                                    ------->TEIL                                                <----                    <---------At4g35610  --------->ANAC46                      <---------YAB1  ------     *TSS  --------->AtMYB61      --------->LBD16                             --------->AHL20(2)----- ------ANAC58  --------->ANAC58   <------NtERF2                               <---------AHL20(2)<---- ------ANAC46  --------->ANAC58  --------->ANAC46                            --------->YAB1    <----- ------ANAC58--------->MYB46(3) <---------LBD16                             <---------YAB1     <-----   cttgtggattagaccacaacccatctgatatttgtccgcatctccacaaccattcttcacctccaacttctcatccatattataatccaacttgccaata  4818400      <---------At4g35610 --------ICU4 ------->AHL20(2) --------AHL20(2) ---->YAB1 ----ATHB1 ---->ATHB51 -----AHL20(1) --->ICU4<-----------HVH21            <-----------GT1               --------->CCA1(2)              <- ---->AHL20(2)                ------->GAMYB                        --------->ARR11(3)     --------->At4g35610 -----ICU4                   --------->ANAC46            ---------->DOF2          <----------DOF2<--- ----ATHB51             --------->TOE2(3)              <---------AHL20(2)  --------->CCA1(2)  ------- ----ATHB12            --------->REM1(1)      <-----------GT1      <---------ARR11(3)     <---------At4g35610   attttttcaactgttacagattactacatcaacgaaatattaaacatttaaccatatataaaagttggagatatatgatataagcttttcttagcagtcc  4818500                                                             <---------MYB59                                                             --------->AtMYB61                                                        --------->HSFC1(1)                                ---------->DOF2         >>>>>>>ZML2    <---------O2                               --------->YAB1           <---------HSFB2a(2)          --------->LBD16                              <---------ATHB12          --------->HSFB2a(2)         <---------HSFB2a(2)       XXXXXXXXXXXXXXXXXXXX>MIR2938--------->ZAT2       <---------HSFC1(1)          --------->HSFB2a(2)      ------>ZmHOX2a(1)     --------->WOX13(1)--------->GLK1(2)------>MYB46(1)  <---------ZAT14 --------ALFIN1   <---------At4g35610        --------->ARR11(3)------>MYB83     --------->ZAT14 ------ALFIN1     --------->GLK1(1)<---------ZAT2<---------ANAC46    --------->CCA1(2) -->PCF2          --------->At4g35610        <---------GLK1(2) --------->MYB52(1)  <---------LBD16   cacccttcctctctcgagagagctccattccaatcaaagctgtgtaagattctgtgttctagaccaaacagagacgcgtctgtgttctggagattataaa  4818600                                                                                        <---------DOF5.7(2)                                                                                   <---------TOE1(3)                                                                             <------ZmHOX2a(2)                                                                            --------->ARR11(3)                              <---------LBD16    >>>>>>>>>WRKY18           <---------GLK1(1)                        ===============================================MYC_MYB     <---------TOE2(3)            --------->YAB1   <---------LBD16 ==========================bZIP_DOF   --------->MYB52(1)         --------->YAB1 <---------MYB52(2)   <----------DOF2   --------->ZAT14  <---------MYB52(2)         <---------ICU4 <------------MYB.PH3(2) ----------->HVH21 <---------At4g35610 --------->DOF5.7(2)      --------->YAB1    <---------MYB59 <-----------GT1      --------->TGA1a<---------ARR11(3)  <----   catatgtctgataatcacaactgataactaactcggggttttttgctcttttgacagaaacacacttcagaagatggagatcactaacgttaccgagtat  4818700                      --------------->AGL15                      <---------------AGL15                     ----------------->AGL1                   <------ZmHOX2a(2)                     <-----------------AGL1                  --------->ARR11(3)                     <---------ANAC58                    <---------At4g35610                       --                     <---------ANAC58                 --------->ZAT18                              --                    <-----------------------TaNAC69(2)<---------ZAT18                            <---            <---------------------WRI1            <-----------RAV1(1)                       <--------         ---------->DOF2                        <---------At4g35610                   <---------ARR14(2)        ---------->DOF2                         ----------->RAV1(2)                   <---------GLK1(2) -----YAB1--------->DAG2                       ------->TEIL  <---------ARR11(3)       --------->ARR14(2)   gatgcaatcgcaaaggcgaagttgcctaagatggtatatgactactatgcatctggtgcagaagatcaatggactcttcaagagaacagaaacgcttttg  4818800  Previous    Next  AGI:  At3g14410.1    Description:  transporter-related. similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G53660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63136.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 4815818    to: 4817987    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14415.1    Description:  (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative. Identical to Probable peroxisomal [Arabidopsis Thaliana] (GB:Q9LRS0); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.1); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.3); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxid Range:  from: 4818305    to: 4821013    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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