Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             --------->ARR11(3)                              --------->ANAC46                                             <---------ARR11(3)         --------->MYB52(1)   --------->YAB1         --------->MYB52(1)                    --------->ARR14(2)   --------->ANAC58     --------->ANAC58         --------->ANAC58                   --------->GLK1(2)   --------->ANAC58     --------->ANAC58       ---------->DOF2            --------->MYB52(1)   --------->ANAC46   ---------->DOF2   <------ZmHOX2a(2)  <---------MYB46(3)------->GAMYB --------->GLK1(2) --->At4g35610   ----------->GT1--------->ANAC46 --------->ANAC58      --------->ANAC46    <---------ARR14(2)   tgcataagcaataacagagaggtcaaaagcaaacacaacacgatcaaacaaaagcaaacggatgttgaattctacacaaccgagggattctaaaatctgc  4817600                                                     --------->ANAC58                                                     --------->ANAC58                                                  ========================HOX2a_HOX2a         --------->HSFB2a(2)                      =======================HOX2a_HOX2a         --------->HSFC1(1)                       ------>ZmHOX2a(1)         <---------HSFC1(1)                      <---------ANAC58                       --------->ZAT18         <---------HSFB2a(2)            <---------ZAT2                    <---------------AGL15         ------>ZmHOX2a(1)              --------->At4g35610               --------------->AGL15   --------->At4g35610              --------->MYB52(1)                    <---------HSFB2a(2)   <---------At4g35610        <---------ZAT18    <---------ANAC58         --------->HSFB2a(2) <---------WRKY45        --------->ZAT14--------->ZAT2             ------>ZmHOX2a(2) ---------->DOF2 <---------WRKY38(1)     <---------ZAT14<---------At4g35610       <------ZmHOX2a(2)---------->DOF2   tagtcaacttcctagaaactagcacagtacattgcacataccagctcaattccttacgaaaactagcgatcggtttctacaaatcgaaagagcacaaaac  4817700                      --------->LBD16                     <---------LBD16                     --------->LBD16                                  ----------->HVH21                    --------->TOE1(2)                                 --------->WRKY38(1)                    <-----------RAV1(2)                             --------->CCA1(2)                    <---------LBD16                                --------->ARR11(3)                  --------->CCA1(2)                   --------->TOE2(3)         ---------->DOF2                  <------ZmHOX2a(2)           <---------TOE2(3)    <---------ARR14(2)                 --------->ARR11(3)           <---------TOE1(3)    --------->ARR14(2)                 --------->ARR14(2)       <----------DOF2          <---------ARR11(3)                 --------->AGP1  <---------GLK1(2)    --------->TOE1(3)   --------->ZAT6                 <---------ARR14(2)       --------->CCA1(2)      ----------->ARR10   aatacgatgcgagaacatagatccagggaaatatagattgtgagatttaaggtaaaccttattgaagaagatttgaccactagaaagagcgatatagaga  4817800                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC55(2)                                                   ------>NtERF2           ------>ZmHOX2a(2)                                                   --------->LBD16       <---------ARR11(3)                                                  --------->ANAC58       --------->ARR11(3)                        --------->ZAT2            --------->ANAC58     <---------YAB1      ----------                        --------->At4g35610       --------->ANAC46   --------->YAB1 --------->ANAC58                --------->ANAC58                 ------>ZmHOX2a(2)<---------ICU4    --------->ANAC58                --------->ANAC58---------->DOF2  --------->MYB46(3) <---------YAB1  --------->ANAC46                --------->ANAC55(2)             <------ZmHOX2a(2) <--------HAHB4   <---------LBD16                <---------ANAC55(2)            --------->ARR14(2) --------->YAB1  --------->MYB52(1)            <-----------HVH21--------->YAB1    <---------ARR14(2)--------->ICU4<---------At4g35610       --------->YAB1   <---------At4g35610  ----------->ARR10   <---------YAB1--------->At4g35610   agaatgtaagcataggtcacgaattcagctctcataaagcctttgctccgatccgccattgaaaccgattattatgatctcagattacggaataaaagtt  4817900                      <----------DOF2       <----------DOF2     <---------ZAT14                      <---------DAG2     <-----------GT1       <-----------HVH21       *TSS                   --------->ZAT6       ---------->ID1         ------>ZmHOX2a(1)<----------DOF2                 <-----------GT1  <---------DAG2     --------->YAB1             <---------DAG2 >DOF2        --------->ANAC55(2) <----------DOF2   <---------ATHB12         <-----------GT1   gtcgcttctggtttttatgtaacacttttccgagtgctttttgtttcttttccaatcgtcttctccttcactgagtatttcactttcccatcttctcaaa  4818000                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                    <---------YAB1                                                 <---------DAG2                                           <---------TCP20                                           --------->PCF2                                          --------->TCP20                                          <---------PCF2                                         <------MYB83<-----------GT1                                         <---------TCP15(2)                                        <---------MYB46(3)                                 <----------DOF2 <----------DOF2                                <-----------------AGL3                    ----------->HVH21  --------->ALFIN1<---------YAB1        --------->At4g35610 ----------->STF1  <---------ALFIN1                                      <      --------->MYB46(3)  ----------->TGA1--------->TCP15(1)          <---------AHL20(2)   ----------    ----------->RAV1(1)   ----------->HVH21<---------TCP15(1)------>ZmHOX2a(1)            <---------AHL20(2)   --------->MYB46(3)  <---------DEAR3(1)<------MYB46(1) <-----------GT1      <----------DOF2       -   tttcaacaacagctaaataagagcgacggtgacgactttaagtgggtcccactttttattatcctctctcattttatgggcttttctcacatttaaagcc  4818100                 --------->ANAC58                 --------->ANAC46                 --------->ANAC58         ----------->GT1         <---------ANAC46             --------->ANAC58         <------MYB83                 --------->ANAC58         <------MYB46(1)            ---------->DOF2<------MYB46(1)    <-----------RAV1(1)            --------->WRKY18(1)              <----------DOF2          <------- ---------ARR14(2)                <-----------HVH21<------MYB83     <---------DAG2          --------- >DOF2<---------MYB52(1)         <---------ANAC46 --------->MYB59<---------ALFIN1     --------->YAB1 -------->ARR14(2)          <---------YAB1     ------->TEIL     <---------ZAT18      <-------TEIL   caaatactgttgggtttataagctattgttatgtttcgtcaagcccatgaatttggttctacctcgcacacttttttttgtttcagtttcatcatccacc  4818200                                    --------->ANAC55(2)                               <---------ICU4                               -------->ATHB1                              --------->AHL20(2)                              --------->ICU4                                                     <---                         --------->YAB1        --------->HSFB2a(2)                      --------->ANAC58                 ---------->DOF2    <---------ANAC55(2)         --------->YAB1   --------->ANAC58<---               --------->YAB1 --------->AHL20(1)           <---------------------WRI1   --------->ANAC58   <---------GLK1(1)    ----------->GT1   <---------AHL20(2) --------->YAB1      --------->ANAC58<--- --ALFIN1     <---------ATHB12<---------YAB1   <---------HSFB2a(2)    ---------->DOF2   --------->ANAC46 >MYB46(3)------------>CBF    <---------AHL20(2)    <------------CBF<---------YAB1 <------ZmHOX2a(1)   cttggatatatgtccaatgaaaagaaatgaaaattattaagtattttttctcgagattgtgaacgataatatgaaagaaatgtaaggaacacacaagttg  4818300                                                                                                   <-                                              --------->MYB46(3)                                   <-                                           --------->MYB46(3)                                      --                                     --------->GLK1(1)                                          <----                                     --------->At4g35610                                        <----                                    ------->TEIL                                                -----                                    <-----------ARR10                                           -----                    <---------At4g35610  --------->ANAC46                      <---------YAB1  ------     *TSS  --------->AtMYB61      --------->LBD16                             <---------AHL20(2)<---- ------ANAC58  --------->ANAC58   <------NtERF2                               --------->AHL20(2)----- ------ANAC46  --------->ANAC58  --------->ANAC46                            --------->YAB1    <----- ------ANAC58--------->MYB46(3) <---------LBD16                             <---------YAB1     <-----   cttgtggattagaccacaacccatctgatatttgtccgcatctccacaaccattcttcacctccaacttctcatccatattataatccaacttgccaata  4818400      <---------At4g35610 --------AHL20(2) --------ICU4 ------->AHL20(2) -----ICU4 -----AHL20(1) ---->YAB1 ---->AHL20(2) --->ICU4<-----------HVH21            <-----------GT1               --------->CCA1(2)              <- ----ATHB1                    ------->GAMYB                        --------->ARR11(3)     <---------At4g35610 ---->ATHB51                 --------->ANAC46            ---------->DOF2          <----------DOF2<--- ----ATHB51             --------->TOE2(3)              <---------AHL20(2)  --------->CCA1(2)  ------- ----ATHB12            --------->REM1(1)      <-----------GT1      <---------ARR11(3)     --------->At4g35610   attttttcaactgttacagattactacatcaacgaaatattaaacatttaaccatatataaaagttggagatatatgatataagcttttcttagcagtcc  4818500  Previous    Next  AGI:  At3g14410.1    Description:  transporter-related. similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G53660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63136.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 4815818    to: 4817987    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14415.1    Description:  (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative. Identical to Probable peroxisomal [Arabidopsis Thaliana] (GB:Q9LRS0); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.1); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.3); similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxid Range:  from: 4818305    to: 4821013    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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