Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------ZAT14                               <-------TEIL                --------->ALFIN1           <XXXXXXXXXXXXXXXXXXXXMIR838      <---------ZAT6           ---------->DOF2     --------->ZAT14                                     ---------->DOF2    --------->DAG2         <---------------AtSPL8                              <---------ANAC46   ---------->DOF2   <------ZmHOX2a(1)      --------->ALFIN1                  <------ZmHOX2a(1) -------->TOE2(3)   ----------->GT1       <---------ANAC46                 <------ZmHOX2a(1) -------->TOE1(3) <------ZmHOX2a(1)      <------ZmHOX2a(1)          <XXXXXXXXXXXXXXXXXXXXMIR847     <   aaccctaaagtgtgaaaggaggaggagaaaacgtacagtgagaggagtgtttgtgagtaaggcagaaattagcgagaggaggagtgaaagtgagacactg  4815100                                  <---------ANAC58                                  --------->ANAC55(2)                                  <---------ANAC58                               <---------ARR14(2)                                         <---------ZAT2                          --------->LBD16                                                 <---------At4g35610                         <---------ANAC46                                                 --------->ZAT2                    --------->ALFIN1                                                      --------->At4g35610                    <-----------RAV1(1)    --------->MYB52(1)                      <------NtERF2                <-----------RAV1(2)       <---------STY1(1)                      --------->ANAC58              --------->MYB52(1)  <---------ANAC55(2)                       <---------ZAT14             ----------->HVH21 --------->GLK1(2)                <----------DOF2  --------->ANAC58          <---------TOE1(3)   <---------GLK1(2)      <---------HSFB2a(1)    --------->ZAT14          <---------TOE2(3)------>NtERF2--------->TOE1(3)  ------>ZmHOX2a(1)<---------ZAT18    ------ --------->ZAT18================RAV--------->LBD16<------ZmHOX2a(1)       --------->At4g35610  ------ ------ZmHOX2a(1)   <---------REM1(1)  --------->ZAT6--------->HSFB2a(1)  <---------At4g35610  <-----   aaggacactattgaggtaacaggtgttgccgagattccgtaaccctaagggaggaccattcctacgcttttgactcagtagactcggcatccagctcatc  4815200                                                                                  <------NtERF2                                                                                  ------>NtERF2                                                                                 ------>NtERF2                                                                                 --------->DEAR3(1)                                                                                 --------->RAP2.6(2)                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                                --------->RAP2.3(1)                                                                               --------->LBD16                                                                               <---------At4g35610                                                                               <---------ATERF1(1)                                                                               --------->At4g35610                                                                               <------NtERF2                                                                               ------>NtERF2                                                                              <---------ATERF1(1)                                                                              --------->DEAR3(1)                                                                             <------NtERF2                                                                             --------->ATERF1(1)                                                                             --------->RAP2.3(1)                                                                            ------>NtERF2                                                                            <---------ATERF1(1)                                                                           --------->RAP2.3(3)                                                                           --------->ANAC46                                                                           <---------DEAR3(1)                                                        --------->MYB46(3) --------->RAP2.3(2)                                                       -------->P          --------->ATERF1(2)                                                   --------->ANAC46        --------->DEAR3(1)                                                   ------>MYB46(1)         <---------ATERF1(2)                                                   ------>MYB83           --------->ATERF1(1)                                               ------>MYB83  ---------->CDC5--------->ABI4(1) <------                                   --------->DEAR3(1) --------->MYB52(1)  --------->DEAR4(2)  <------                                  <---------LBD16------->GAMYB            --------->ERF1      -------                                 ------>NtERF2 ------>MYB46(1)            --------->RAP2.3(1) -------                                 --------->LBD16<---------ATHB12         <---------ATERF1(1)---------                                --------->DEAR3(1) --------->ANAC58 ------>NtERF2--------->RAP2.3(2)                                --------->ANAC46--------->MYB46(3) --------->WRKY12--------->WRKY18(1)                          --------->KAN4(2)  --------->AtMYB61   --------->At4g35610      -----------                        <---------MYB52(1)  --------->MYB46(3)   <---------At4g35610  --------->ANAC58    --------->AHL20(2)----------->GT1<------NtERF2 --------->AtLEC2--------->WRKY38(1)--------->ANAC46 ----->RAV1(2)     ------------>MYB.PH3(1) >>>>>>>>>MYB2<------------AtMYB77<---------RAP2.3(1) --->At4g35610     --------->GLK1(2)--------->LBD16--------->ANAC58----------->HVH21  --------->ANAC58 ----At4g35610 --------->YAB1  <---------LBD16 -------->P------->GAMYB  --------->ANAC46  --------->MYB52(1)   tgcagtttaaatcccattcaaaatcggttattctccgccggagaaaaccaaccaagcaaccgctcatcgctgactcgccgccgcggccaagccaacagct  4815300                     <<<<<<<<CAMTA3                     -------------->OsCBT                    <-------MYC3  ------>ZmHOX2a(2) ------->MYC3  ==================================HOX2a_HOX2a <------ZmHOX2a(2) --------->ANAC46                                          <---------ATHB12 ===================================HOX2a_HOX2a                    <---------ANAC58 ---At4g35610      --------->ANAC58                                <---------ANAC58 ---ZAT2           --------->ANAC58                               --------->ATERF1(1) -->At4g35610    <---------ALFIN1       <----------DOF2          ------>NtERF2                    <-- -->ZAT2<----------DOF2          <----------DOF2                <---------RAP2.3(3)             ----- >MYB46(3)    <-----------GT1    <---------DAG2         --------->ANAC55(2)--------->WOX13(1)  <----- >RAV1(1)   <-----------HVH21------>ZmHOX2a(1)        <-----------GT1   ------>ZmHOX2a(1)      ------   gcgatcgcatcttttgtcaccacgcgttttcctcgcttttctctttctcttctaattcacgttttgggggcttcctccaatcaatttgtagtcgaaatta  4815400           --------->ANAC58           --------->ANAC58                                                                        --         <-----------GT1                                                                        -----    --------->ARR11(3)                                                                         <-----    <---------ARR14(3)                                                                         ------    --------->ARR14(3)                                              ------->GAMYB            --------    <---------GLK1(2)                                              <------------AtMYB77   --------->ANAC46    --------->ARR14(2)                                             --------->MYB46(3)     --------->ANAC58    <---------ARR11(3)                                       <---------TOE2(3)            --------->ANAC58    <---------ARR14(2)                                       <---------TOE1(3)        ------>NtERF2--  ----------->ARR10                                 <---------ARR14(2)           <---------GLK1(1) -- -------TOE2(3)             <---------HSFB2a(2)     --------->ARR14(2)  ------>NtERF2--------->ANAC58 ----->DOF2--------->ANAC46<---------LBD16      <------ZmHOX2a(2) <---------At4g35610--------->DEAR3(1) ----AHL20(2)            --------->ALFIN1      --------->ARR11(3) --------->At4g35610--------->ANAC58 --->AHL20(2) ------->TEIL--------->ALFIN1     <---------ARR11(3)--------->MYB52(1) --------->MYB46(3)   aaggaagattttcacgaatttgaaagagttggggaaggaagaagatgaagatcgaattcgatgaaggtaactgccgagggaagagacccgcccagcaaca  4815500                                                                         <------MYB83                                                                         ----------->GT1                                                                         <------MYB46(1)                                                                        --------->MYB111(2)                                                                        --------->MYB46(2)                                                                       <--------P                                                                       <---------MYB55(1)                                                                      <---------MYB52(1)                                                            --------->AHL20(2)                                                            <---------AHL20(2)    <---------ALFIN1                                       --------->AHL20(2)  --------->ANAC46                                         --------->AHL20(1) ------->ANAC46                                            <---------AHL20(1) -->GAMYB                  <---------At5g28300          --------->AHL20(2) ----MYB52(2)         *TSS<-----------GT1             <---------AHL20(2)--------->MYB59 --->MYB46(3) --------->HSFB2a(2)             <---------YAB1<---------YAB1     <---------------AGL15 --->RAV1(1)  <---------HSFB2a(2)           <---------AHL20(2)      --------->LBD16---------->DOF2 ------->ANAC58       <---------AHL20(2)   <---------AHL20(2)      <-----------RAV1(2)----------->GT1 ------->ANAC58   --------->ICU4  ---------->ID1      --------->AHL20(2)--------->MYB111(1)   <------   aaccccacaatcccttcgcgatgtttatttaccctcgtcccattttttatttttaaaaaaatataatttccaggtaggtaaacaaaaaaggaaatactgt  4815600                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(1)                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                  <---------YAB1                                                                                <---------AHL20(2)                                                                                <---------ICU4                                                                                -------->ATHB1                                                                                --------->ATHB51                                                                                --------->YAB1                                                                                <--------HAHB4                                                                                -------->HAHB4                                    --------->DAG2                             <---------ATHB51                                 <------ZmHOX2a(1)                      <---------AHL20(2)  <--------                                <----------ID1                          --------->AHL20(2)  ---------                        --------->ANAC46                     --------->REM1(2) <---------YAB1      --                        --------->ANAC58                    <---------REM1(1)  --------->ICU4      <-     <----------DOF2    --------->ANAC58   --------->CCA1(2)--------->ALFIN1--------->AHL20(2)    --- ---ZAT6           <----------DOF2 ---------->DOF2        <---------ANAC46  <---------AHL20(2)   <---   tactgggctttttaggcccatcttttaagccaataggaaaagtcgatacacgatttatctacgtgtagccatatttttttaattattaaatttaagctga  4815700          --------->ARR11(3)          --------->AHL20(1)                                                           --------->AHL20(2)          <---------AHL20(1)                                             <---------------AGL15          <---------ARR11(3)                                             <---------DAG2<---------AHL20(2) -At4g35610    <-----------GT1                                           --------------->AGL15 >At4g35610    <---------AHL20(2)                            <-----------GT1 <---------ANAC46 ------->ARR11(3)                  --------->YAB1   <---------DAG2       <----------DOF2     <------- --------ARR11(3)        ---------->DOF2            <----------DOF2     ----------------->AGL1<------ ------>YAB1<---------ICU4  <----------ID1       <-----------GT1<----------DOF2     --------->YAB1 ------YAB1--------->AHL20(2)<------ZmHOX2a(1)   <---------AHL20(2)    ------>NtERF2----------->GT1--   tgatattcagaaaatatttacttcttggaaaggacaaaaataaaactaaatttactttttttttttctttctctgccttatgtggatgataaattttcgg  4815800                                                                           <---------ZAT14                                                                       --------->LBD16                                                                       <---------TOE1(2)                                                                      --------->LBD16       ------>MYB83  <---------AHL20(2)                              <---------LBD16       ------>MYB46(1)       --------->YAB1                      <----------DOF2     ---------->ID1     --------->TOE1(2)   <---------AHL20(2)                   <-----------GT1       <-------GAMYB  -- --LBD16            --------->AHL20(2)                        ---------->ID1       --------->MYB52(2) ---ANAC46          <---------AHL20(2)               <----------DOF2 ----------->RAV1(2)           <- ------->YAB1----------->GT1<---------YAB1      <-------TEIL <-----------GT1       <---------MYB46(3)   ataataacctacaaaatgtgaataaaatttatgagaattgaacaaattgattcatcttttttttttcctttccctggtacagagtttgttgtataagtta  4815900          --------->At5g28300         ----------->GT1         <---------DEAR3(2)                --------->TOE2(3)                            --------->At4g35610        --------->ANAC58                   --------->TOE1(3)                          <---------ICU4        --------->ANAC58             <---------ICU4                                --------->YAB1       --------->SPL7            --------->YAB1           <---------YAB1    --------->TOE1(1)     <---------SPL7             <<<<<<<<<ARR2 ---------->DOF2              <---------LBD16 ------->AHL20(2)               <---------ATHB12       --------->ICU4      --------->HSFB2a(2) --------AHL20(2)             --------->WOX13(1)       <---------YAB1      <---------HSFB2a(2)   tataattcggacggtacaaatgagaaaacaaacaatcaaagattacctcaaagactgatgatgagaaactacattttctcggacatcatcatctctctgt  4816000  Previous    Next  AGI:  At3g14400.1    Description:  UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 25 (UBP25) [Arabidopsis Thaliana] (GB:Q9FPS2;GB:Q8VZF5;GB:Q9LUK9); similar to UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G57990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63575.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 4811539    to: 4815522    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14410.1    Description:  transporter-related. similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G53660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ63136.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 4815818    to: 4817987    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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