Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <-------TEIL               --------->CCA1(2)               --------->ARR14(1)              --------->ARR11(1)                                                                   <-              <---------ARR14(2)                                                                   <-              <---------GLK1(2)                                                                   <--              --------->ARR14(2)                                                         <-----------TGA1            ----------->ARR10                                                            <-----------HVH21           --------->YAB1                                           <------ZmHOX2a(1)   --------->bZIP60(2)     ----------->RAV1(1)          <---------YAB1                    ----------->GT1     --------->ANAC46   --------->ZAT18           <---------ICU4                        ----------->GT1      --------->ANAC58  --------->ANAC46          --------->ICU4                   ---------->DOF2            --------->ANAC58   ctaagcgcagcaataagattcgaagaaacaaagattactattacacaatgcatattgaagagattaagcaggataaaaaaaaaccaagacccgtcatcac  4782100                                  <----------DOF2                                ------>ZmHOX2a(1)                              ------>ZmHOX2a(2)              ------->TEIL   <------ZmHOX2a(2)         <------MYB46(1)    --------->ARR11(3)         <------MYB83       <---------GLK1(2)        <---------AtMYB61   <---------ARR14(2)        --------->ALFIN1    --------->ARR14(2)      <------ZmHOX2a(1)     <---------ARR11(3)      ===============================HOX2a_HOX2a      ==============================HOX2a_HOX2a   <------NtERF2            --------->AGP1                                                  ------>NtERF2 <---------DEAR3(1)       ----------->ARR10                                              <---------At4g35610 --------MYB52(1)      <-------GAMYB                  <-----------GT1 <----------DOF2    --------->At4g35610 ----------HVH21       <-----------HVH21          <----------DOF2   <------------------------ANAC81 -------SPL7<-------TEIL<---------MYB52(1)        <---------DAG2 <----------DOF2<----------DOF2<-----   cggtcggaggatggtgcatcttcgccgttagatcctctttgagagccttcaacttttttctcaacctcttttcttttctgttctttgtcttcgctgcctt  4782200                                           --------->AHL20(2)                            --------->ANAC58                            --------->ANAC46        <---------ICU4                            --------->ANAC58        --------->ATHB12                          ------>ZmHOX2a(1)<---------AHL20(2)                =================HOX2a_HOX2a       --------->ICU4                ==============HOX2a_HOX2a <---------AHL20(1)                ------>ZmHOX2a(2)         <---------AHL20(2)                               --------->TOE1(3)               --------->GLK1(1)       --------->ATHB51                                    --------->TOE2(3)      ------>ZmHOX2a(1)------>ZmHOX2a(1)  --------->AHL20(2) --------->YAB1          <---------YAB1      =================HOX2a_HOX2a     --------->AHL20(2)   <---------YAB1        --------->ICU4 -----DOF2    <---------ARR11(3)    --------->YAB1 <---------YAB1                 --------->GLK1(2) <   tactaatcctctccctgatctcttcctcctacgcattagaataatttaatttcatgattactatgacaaacaaacaaaaatgagattatgaaacctcaac  4782300                                                                                                    -                                                                                             <------NtERF2                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                  <---------HSFB2a(1)                        ------->GAMYB  ------>NtERF2                                  --------->HSFC1(2)                        <---------MYB55(2)     --                                  <---------HSFC1(2)                        --------->MYB46(3)   ----                                  --------->HSFB2a(1)                      -------->P <---------ALFIN1           <-----------HVH21     ----------->ARR10        <---------DEAR3(2)<---------ATHB12<--------  <---------MYB46(3)     <---------ANAC58             --------->At4g35610  ------>MYB46(1) --------->DEAR3(1)  ----------->GT1        <---------ANAC58             <---------ZAT2       ------>MYB83 --------->ANAC58 ---------WOX13(1)  <----------DOF2                   --------->ZAT2<----------DOF2  ------>ZmHOX2a(1)   taattggttacattgtcaagtgctttagcgttgggaagtttcgaaccatgaacaccagctcggttcgaggcttttccaaccatcgtcctcacgccgtcgt  4782400                                   --------->ANAC46                               --------->GLK1(1)                               <---------GLK1(1)                               <------ZmHOX2a(2)                              <-----------ARR10                              --------->ARR14(3)                              --------->ARR14(2)                              <---------ARR14(2)                              --------->ARR11(3)                              --------->AGP1                              <---------AGP1                              <---------ARR11(3)             <---------AHL20(2)                         ----------->RAV1(1)                 --------->AHL20(2)                      --------->PCF2                         <---------ICU4                     --------->ARR14(2)                      --------->ATHB51                   <---------DEAR3(2)                      *TSS                   --------->HSFC1(2)                    <---------YAB1                   <---------MYB46(3)               <---------ICU4                   <---------HSFB2a(1)             <---------YAB1                   <---------HSFC1(2)           <---------ATHB12   --------->AtMYB61 <---------ARR14(2)      --------->LBD16--------->ICU4               <---------CCA1(2) ------>GAMYB      --------->HSFB2a(1)      <---------HSFB2a(2)                        <---------ANAC46 ------->MYB46(3) <---------DEAR3(1)        --------->HSFB2a(2)                --------->ANAC46 ----->MYB52(1)----------->HVH21------>ZmHOX2a(2)--------->YAB1 <-----------GT1--------->ANAC58 ---HVH21  <----------DOF2   <---------CCA1(2)  <------ZmHOX2a(2)              --------->ANAC58<-----   aacgaccatcaaactttccgacggttcccacagatctccacaacttcccgatcatcattctaattatttctaccctcattcaagaaatcgtgtatattat  4782500                                                                                   ------->MYC3                                                                                   <-------MYC3                                                            --------->DAG2         <-------PIF5                                                           ====================bZIP_DOF                                                           ---------->DOF2         ------->MYC4                                                    <-----------HVH21              ------->MYC2                                                  ------->MYC2               --------->ARR14(2)                                                  ------->MYC3               <---------ARR14(2)                                                  <-------MYC3         ----------->HVH21                                                  ------->PIF5        <-------MYC3 ------->PIF5                                                  <-------MYC2        <-------MYC2 <-------MYC2                                                  ------->MYC4        ------->MYC3 <-------MYC4                                                  <-------PIF5        ------->MYC2<---------TGA1a                                                  <-------MYC4        <-------PIF5--------->ANAC55(2)                    <---------ANAC46             <---------TGA1a      ------->PIF5--------->TGA1a                    --------->ALFIN1             <---------O2        --------->O2 --------->ANAC46                  <---------ANAC58               --------->ANAC55(2) --------->TGA1a                  <---------ANAC58               =====================bZIP_DOF    <---------O2    ---                  <---------bZIP60(2)            --------->O2        --------->ANAC55(2)          <--                 <---------AtMYB61               --------->TGA1a     --------->ANAC46        <-------              <-----------HVH21                  <---------ANAC55(2) <---------O2 --------->O2 ------             --------->O2                      <---------ALFIN1      <---------TGA1a <-----------HVH21             --------->TGA1a                 ==================================MYC_MYB       <-------             <---------O2     --------->ZAT14-------->P    =================================bZIP_DOF             =========================================MYC_MYB        --------->bZIP60(2)     <-------    <---------YAB1<---------ANAC46           ==============MYC_MYB   =======================bZIP_bZIP ----AHL20(2)<---------TGA1a  <---------ZAT14===============================================MYC_MYB <   atggttttgattcaaacgtgaggtgtgcatagtatagtcgatttatctaccacgtgtcataaaaagtgtccacgtgacaaatccacgtgtcactagcgtg  4782600                                                           <---------WOX13(1)                                                          <---------ANAC58                                                          <---------ANAC58                                                         --------->ATHB12                                                     <------NtERF2                                                    ------>NtERF2                                                   --------->DEAR3(1)                                                  --------->ATERF1(1)                             <-----------GT1      <------NtERF2                           <---------GLK1(1)     <---------ATERF1(1)   <---------MYB52(1)     <---------ARR14(2)    --------->O2        ---------->DOF2   <-----------HVH21 <---------ANAC58           <---------O2    --------->LBD16<---------GLK1(2) ------>ARR14(2)     <---------ANAC55(2)        <---------DEAR3(1)----------->HVH21 -------ARR14(2)     <---------bZIP60(2)      <-----------HVH21<---------DEAR3(1)<---------MYB46(3) --ANAC46            <---------ANAC58        <---------ANAC58  <---------DREB2C(2) --->ALFIN1          <---------ANAC55(1)     <---------ANAC46  --------->ATERF1(2) --ANAC58            --------->ANAC55(2)  <---------ARR14(2)   <---------ATERF1(2) --ANAC58--------->GLK1(1)--------->ARR14(2) <---------ANAC58 <---------LBD16<---------ATHB12       < ---------LBD16      <---------ANAC46     --------->ARR14(2)  <---------ANAC46 <------------CBF -----   tttccggtcgggtttctaatattacgtggatttacgctcttacggttccgtcgtcgccttgattgccggtgaaagtccaaagattgttgaaatttagaac  4782700                                                                                   <---------AHL20(2)                                                                                  --------->AHL20(1)                                                                                  <---------AHL20(1)                                  <---------ARR14(2)                          <---------AHL20(2)   --                                  --------->ARR14(2)                         --------->AHL20(2)    <-                              <---------At4g35610                          --------->TOE2(3)       --            <---------TOE1(3)----------->RAV1(1)                  <----------DOF2 <---------AHL20(2)  <---------MYB52(1)       --------->At4g35610          --------->YAB1    --------->YAB1      ------- <-------GAMYB             <---------At4g35610--------->YAB1      <---------DAG2  --------->AHL20(2)< ---------MYB46(3) ------------>CBF         <------------CBF    *TSS     <---------TOE2(3)   -------- ---->MYB46(3) <----------DOF2--------->At4g35610      <------ZmHOX2a(2) <---------YAB1      --------   gaccgttgctgtttaagctttagcaattcagcagcagatttacacaaattgtaatcgatcatattccactttattaacataaaatttattcaaacaagga  4782800                                   <---------GLK1(1)     <---------YAB1            ------>ZmHOX2a(2) ------->ICU4         <---------MYB52(1) --------AHL20(2)  <-----------------AGL2 ------->AHL20(2)  <-----------------AGL3   --------->DAG2                         --------->DAG2 ---->GT1          <-----------------AG   ---------->DOF2               --------->GLK1(2) ---------ICU4   <-----------GT1   --------->GLK1(1)                   <---------GLK1(2) ->ANAC58      --------->YAB1--------->ARR14(2)                     --------->ETT(1)  <----------ID1 ->ANAC58 ----------->GT1    <---------ARR14(2)               <-----------RAV1(1) ---------->DOF2   aaaaattacaaatggaataataccgtttttggatcggaactcacaaaagggaatggttttgttcatgttgtcggaatctaaaaaaaaagctacaaattgg  4782900                                <---------ANAC58                                <---------ANAC55(2)                                <---------ANAC58                                <---------ANAC46  <---------YAB1                        <---------ZAT14    <-------GAMYB                        --------->ZAT14   <---------MYB46(3)                        --------->ZAT18   --------->MYB111(2)                                 -------                        <---------ZAT18   --------->MYB55(2)                                 <------ZmHOX2a(1)                --------->TOE1(2)  --------->REM1(2)          <---------ICU4       ----------->GT1                --------->TOE2(2) ----------->HVH21           --------->YAB1     ---------->DOF2        ---------->DOF2----------->GT1   <--------P        --------->YAB1<---------YAB1  ---------->DOF2   gaacaaattacaaagaaacatgggagtgtacaatgcgtgaagggttgttgttgttattctctcatcatcagttttatgaaaccgaaagaaaaaaaggatt  4783000  Previous    Next  AGI:  At3g14330.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17592.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4779695    to: 4782459    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g14340.1    Description:  unknown protein Range:  from: 4782764    to: 4783144    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g14350.1    Description:  SRF7 (STRUBBELIG-RECEPTOR FAMILY 7); ATP binding / protein serine/threonine kinase. Identical to Protein STRUBBELIG-RECEPTOR FAMILY 7 precursor (SRF7) [Arabidopsis Thaliana] (GB:Q9LUL4;GB:Q3EB62;GB:Q3EB63); similar to SRF6 (STRUBBELIG-RECEPTOR FAMILY 6), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to SRF6 (STRUBBELIG-RECEPTOR FAMILY 6) [Arabidopsis thaliana] (TAIR:AT1G53730.2); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Prote Range:  from: 4782764    to: 4787243    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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