Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------>ZmHOX2a(2)                                                --------->CCA1(2)                                                <------ZmHOX2a(2)                                               --------->ARR11(3)                                               --------->AGP1                                               <---------AGP1                               <-------TEIL                                               <---------ARR11(3)                          --------->CCA1(2) --->MYB46(3)                              ---------->DOF2        <----------DOF2          --------->GLK1(2) ->P                            --------->At4g35610   <---------ICU4             ---------->DOF2 ->WOX13(1)               ---------->DOF2--------->TOE2(3)      --------->At4g35610     ----------->ARR10   aattccaaagactaagctataaactaagaaaagcctctgaaaacctaaagatctaaaaatttcatgagctttccaattcaaataaaagttgagattcgaa  4738700                                      --------->MYB52(1)                                      <---------LBD16                                     --------->CCA1(2)                                   --------->HSFC1(2)                                   <---------ZAT2                                   <---------HSFC1(2)                        --------->ANAC58                        --------->ANAC58                       --------->ANAC58                   --------->ZAT14 --------->At4g35610         --------->ANAC58                  --------->ALFIN1 <---------At4g35610  --------->At5g28300            <-----------GT1        <---------HSFB2a(1) --------->LBD16                       <-------         --------->ARR11(3)       --------->ANAC58    <---------ANAC46                      <--------         <---------ARR11(3)       --------->ANAC58   <---------LBD16            <---------TOE2(3)         --------->AHL20(1)  --------->At4g35610 <---------MYB46(3)            >>>>>>>>>WRKY18        --------->AHL20(2)---------->DOF2        --------->MYB111(1)      <---------YAB1  --------->YAB1   tcaaacccaaatatataccagtggagacgaaagcggaagctacgggcttagtagttgcggtgaagacgaaaggcttaacattgacgaagacatcatcatc  4738800                                                     --------->YAB1                                                    <---------ATHB12           ------>ZmHOX2a(2)                                             --------------------->WRI1       <------ZmHOX2a(2)                                      --------->GLK1(1)                      --------->ARR14(2)                        --------->TOE1(3)  <---------At4g35610               <---------ARR14(2)                        --------->TOE2(3)  --------->At4g35610         <---------GLK1(1) --ICU4               --------->ICU4  <---------GLK1(1)         <------ZmHOX2a(2)          ------>ZmHOX2a(2) -YAB1    ---------->DOF2------>ZmHOX2a(1) --------->ZAT2      <---------ARR11(3) <----------DOF2<---   gtcttcgcagtcaaaagccgagtcatccttaaacccttggaaatcagcttcgaaatcatcgtcaagatcgaagaaatcggatcgcttattcgatctcttc  4738900                            ------>NtERF2                         <---------LBD16                 <---------PCF5                         ------>ZmHOX2a(2)               <---------PCF2                        --------->CCA1(2)            <------NtERF2                        <------ZmHOX2a(2)           --------->LBD16                        --------->ARR14(1)         --------->ALFIN1                       <---------ARR14(2)         <---------LBD16                       --------->ARR11(3)        <---------bZIP60(2)                       <---------GLK1(2)         <---------O2       <---------AtMYB61                       --------->AGP1            <---------ANAC46  <------NtERF2                       --------->ARR14(2)     ----------->HVH21  <---------DEAR3(1)           <----------DOF2 --------->LBD16    ----------->TGA1  <------NtERF2                    <---     <----------DOF2  <---------At4g35610   --------->MYB52(2)  <---------LBD16                ------ -------DOF2       <-----------------AGL1 <---------MYB52(1)  <---------DEAR3(1)     <---------YAB1<-   tttgaagctttcactttgtttttcagatccggccagataaactcgttagtgacgcggagggacctcggcggaggtatgaaatcggagattatagctcctc  4739000                                                                    ----------->GT1                                                                   ------>NtERF2                                                                --------->HSFB2a(2)                                                                <---------HSFB2a(2)                                                              <---------LBD16                                                           --------->HSFC1(2)         <---------ANAC58                                  <---------HSFB2a(1)         <---------ANAC58                                  <---------HSFC1(2)        <------NtERF2                                     <---------ARR14(2)      <---------RAP2.6(2)   <----------DOF2               --------->ARR14(2)  <-------MYC3            --------------->AGL15           --------->GLK1(2)  <---------ICU4  ------->MYC3--------->ANAC58               --------->YAB1--------->HSFB2a(1)        <---------GLK1(2) ------ALFIN1 --------->ANAC46        ----------->GT1     --------->ARR11(3) <---------AHL20(2) >ZmHOX2a(1)  --------->ANAC58        --------->ALFIN1    <-----------ARR10 --------->AHL20(2) <----- --------ALFIN1 ---------->DOF2     <---------ANAC46     <---------GLK1(2)--------->YAB1  <----------DOF2   cacacatggtggcttcacgaaagctctactctttttaggggtgtaaatgatcagaaatagaatcttcggggcgaaataataaatattcgattctttgggg  4739100                                                                       <---------AHL20(2)                                                               ----------->GT1                                                               <---------ANAC46                                                            <------MYB46(1)                    <-----                                           *TSS             <------MYB83                    <--------                                          ---------->DOF2  <---------AtMYB61         <----------DOF2             <-----------GT1            --------->LBD16    --------->MYB55(2)    <---------GLK1(2)   <------------------------ANAC81     --------->HSFB2a(2) <---------MYB46(3) <---------WOX13(1)    <  <----------DOF2  <----------DOF2     <---------HSFB2a(2)--------->ALFIN1   <------------CBF-------- -------------------ANAC81      <-----------GT1     ---------->DOF2   --------->AHL20(2) <---------YAB1   ttctcttttttagtttttcttctttgtctcgatgttactctccagaaagaatgagaaagggtgggtcgtatattatatagattgattctttactattata  4739200                                                                          <---------YAB1                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                         <---------AHL20(1)                          <---------ANAC55(1)                            --------->AHL20(1)                          --------->ANAC55(2)                            --------->AHL20(2)            --------->ANAC58                                      <------NtERF2            <---------ANAC55(2)                                   --------->At4g35610             <--            --------->ANAC58                                      <---------At4g35610            ----    --------->TOE2(2)<---------MYB46(3)                          <---------MYB46(3)          --------   ----------->RAV1(2)<-------GAMYB                             <---------DEAR3(1)          <--------  -------->P--------->ANAC55(2)                                 <---------RAP2.6(2)         <-------- ------GT1<---------ANAC46<---------ANAC55(2)                   --------->ALFIN1      --------->ZAT14 -YAB1<-----------HVH21<---------MYB52(1) <---------TOE1(3)   <---------ANAC58        <---------ZAT14 ---------MYB52(1)   <----------DOF2  <----------DOF2         <---------ANAC58   <---------At5g28300 ->YAB1----------->HVH21  <---------ANAC46<---------TOE2(3)  <---------MYB46(3) <-----------GT1 <----   cccttacctgtgactcgtaatggctgttatgtgtttaagcctttaaggtgatttgtcatggtttgggtggctgaatataattttacagtttagtgcttat  4739300                              --------->GLK1(2)                             <---------GLK1(2)                           ----------->ARR10                  >>>>>>>>>>AGL24                                  --------->AtLEC2                  >>>>>>>>>>AGL22                                  --------->ANAC58                  >>>>>>>>>>AGL20                                  --------->ANAC58                  --------->YAB1                                 --------->YAB1                  -------->ATHB1                <---------------AGL15                  <--------ATHB1               ======================================================    <---------YAB1--------->ATHB51             ----------------->AGL3    ----------->GT1     <---------ANAC46       <-----------------AGL3          --------->ARR11(3) <---------AHL20(2)     <---------REM1(1)      <-----------------AGL2    --------->YAB1 -------AHL20(2)  --------->ATHB12             ----------------->AGL2   ----------->GT1 ----->AHL20(2)   <---------ICU4             --------->ZAT6      <---------ICU4<---------ARR11(3) ->ICU4          <---------YAB1              <-----------GT1    <---------ATHB12         --------->YAB1 -ANAC58         --------->ICU4             <---------YAB1  --------->ARR11(3)--------->RVE1(1) -ANAC58         <---------ATHB51     <---------TOE2(3)     <---------ARR11(3)--------->CCA1(1) -----YAB1       <---------ATHB12<----------DOF2--------------->AGL15   <---------ATHB12<---------YAB1   tatataatgaaaaaatgcaataattggtgtagattcttttgatgttatcactatatatggaagataatcatgcaatgaaaatatctaattttcataatcc  4739400                                              <---------STY1(2)                                              --------->STY1(2)                    --------->ANAC58                                         <--------HAHB4                            --------->ANAC58                   --------->AtLEC2      --------->ATHB51    <-------MYC3 --------->AHL20(1)                 --------->YAB1          <---------ICU4   ------>MYB83    --------->ARR11(3)                 <---------ICU4         --------->ICU4    --------->MYB52(1)     ---------->DOF2                <---------ATHB12        <---------YAB1    ------>MYB46(1) <---------ARR11(3)            <---------ARR11(3)        --------->YAB1    --------->AtMYB61 <---------AHL20(2)     --------->ARR14(2)              ----------------->AGL3  ------->MYC3 <---------AHL20(1)     <---------ARR14(2)              <---------YAB1     <---------MYB59   --------->AHL20(2) ======================================================MADS_MADS         --------->AHL20(2)   actagtagatactagataatcatgcattgaacaaatgttctcataattagctagtagaccaaacgtgttttacaaatatattgaaaagctatgttttggt  4739500                                      ----------->GT1                                  --------->ARR11(3)               -------->P   <---------ANAC55(2)              <-----------GT1     <---------AHL20(2)           <-----------GT1  --------->ANAC55(2)                            <---------ANAC58      --------->AHL20(2)    ----------->GT1              --------->AHL20(2)<---------ANAC58     <---------YAB1<----------DOF2<---------AHL20(1)   ----------->GT1--------->MYB52(2)        <----  <---------AHL20(2)  --------->AHL20(2)      <-----------GT1       <--------P             --------->ICU4   atatttgattatttatcaaccctttaaaatatgtaatatatggttttataacaaaataagttaatacaaggtaagttgcatcccaatgttgtcatatttg  4739600  Previous    Next  AGI:  At3g14230.1    Description:  RAP2.2; DNA binding / transcription factor. Identical to Ethylene-responsive transcription factor RELATED TO APETALA2 2 (RAP2-2) [Arabidopsis Thaliana] (GB:Q9LUM4;GB:O23104;GB:Q8LE76); similar to RAP2.12, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53910.1); similar to RAP2.12, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53910.2); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (In Range:  from: 4737153    to: 4739143    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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