Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  ----------->GT1            <------MYB46(1)       ----------->HVH21     <---------ANAC58             <----------DOF2     <---------ANAC58             <---------DAG2                                        <------ZmHOX2a(2) ----------->AGL15        --------->TOE2(3)                                       <---------ANAC46 -------------AGL2      --------->ARR11(3)                                   <---------MYB46(3) -------------AGL3      <---------ARR11(3)                                  <----------DOF2 ------------>AGL3     --------->RVE1(1)                                   <---------ANAC58 -----GT1   <------MYB83--------->GLK1(2)        <----------DOF2           <---------ANAC58   catttttgggtgataggtgagaaaaaaatctaaatactttttttgtttcttcttttttagttatgttctgttttctcgcttgttgtttggatcaatactg  4642600                 <-----------GT1       <---------MYB46(3)       <------MYB83       <------MYB46(1)                   <---------ANAC46      <---------AtMYB61                  <---------AtLEC2                                   <--------     <--------P <-----------GT1          <---------ANAC58                                 -----------  <---------TOE1(2)                      <---------ANAC58   <---------MYB52(1)         <---------ARR14(2)  <---------TOE2(3)            --------->MYB52(2)   <----------DOF2  <---------CCA1(2) --------->ARR14(2)   ttccaaggttggttttattttcccttctcaagttagtggaattgcatgtttgtgctttctctgttttttttatatctaatttgtaatcaaatccgttaat  4642700                                                                                        <---------DAG2                                                   <----------DOF2                     <---------ANAC58                                              <---------GLK1(1)                     ---------->ID1                                              <---------At4g35610                  <-------GAMYB                                             <---------AGP1                       <---------MYB46(3)                                             --------->ARR11(3)                   <-----------RAV1(1)                                             <---------ARR14(2)                   --------->MYB52(2)                                             --------->ARR14(2)                 <---------ANAC46                                        <------------CBF                   <-----------RAV1(1)                                       <--------ATHB1                     ------>ZmHOX2a(2)                                       <---------ICU4                    <------ZmHOX2a(2)                                       --------->ATHB12                 --------->ARR14(2)                                       --------->ATHB51                 <---------ARR14(2)               <-----------GT1         -------->HAHB4                   --------->AGP1 <---------ANAC58             <----------DOF2          <---------ATHB51                  <---------ARR11(3)            <---------ICU4            --------->ICU4          <----------DOF2<---------MYB52(1) ---------->DOF2  <----------DOF2     <---------YAB1   <---------TOE2(3)<---------AGP1 <---------ANAC46 -MYB52(1)------->TEIL           ----------->GT1 --------->At4g35610    --------->ARR11(3)    <------ >GT1    <---------CCA1(2)       --------->YAB1------>ZmHOX2a(2)       <---------CCA1(2)<----------DOF2   tctcaaagtctgaatctttactttctattttagtatggtaataattggatctgctctatggtttctttctcttagatctgttgtttgttgctttttcttt  4642800                                                        --------->ATHB12                                                     --------->YAB1                     ----------->HVH21                                                   --------->ARR11(3)      <---------WOX13(1)                                                 <---------AHL20(1)       <------------CBF                                                 --------->AHL20(1)      --------->ATHB12                                                 <---------ARR11(3)   <---------ANAC58<---------At4g35610                                            ------------>CBF          --------->ANAC55(2)         <--  <------ZmHOX2a(2)                        <---------ARR11(3)       <-----------GT1 <-----------RAV1(2) ----DOF2       <---------YAB1        ------------>CBF <---------YAB1 <---------ANAC58--------->At4g35610   gtggatcaagaatggtttttgattccttccaagtgaataatgcaatatcaatatatcatgactggtttttttacttgattggaattacaggtgactgaat  4642900                      ------>ZmHOX2a(2)                    --------->ARR14(2)                    <---------ARR11(3)                    ------->TEIL                    --------->ARR11(3)         <---------CCA1(2)       <---------HSFB2a(2) <---------ARR11(3) <---------ARR14(2)                     <---------TOE2(3)                       -- --------->ARR11(3) <---------AGP1                <------------CBF             --------->GLK1(1)  <-- ---------GT1    <---------WOX13(1)            <---------MYB52(1)   ------------>CBF          -------   aaacatctcttgtctcttgatggatctactatggtctggagattagttcgtttattgaactaatgttttagacaatgcaagagttccatagtagcaaaga  4643000                                                                        <---------WRKY18(1)                                                                       --------->WRKY12                                                                       --------->WRKY38(1)                                                                       ----------->HVH21                                                                     --------->TOE2(3)                                                                   <---------YAB1                                                                <---------YAB1                                                              --------->YAB1     <---------ANAC58                                        <------ZmHOX2a(2)             <---------TOE1(3)     <---------ANAC58                                       <---------ARR11(3)             <---------TOE2(3) ------->ATHB12                             ------>MYB83 <---------TOE1(2)             <---------DAG2 -----TEIL  ------>ZmHOX2a(1)               ------>MYB46(1)--------->YAB1 -------->ZAP1<----------DOF2 -->ICU4    --------->AtLEC2              --------->MYB46(3)--------->ARR11(3)      <---------ALFIN1   ttcattgccttgtcctgcaacttcttgggataactctgtcttcaccaactcaaatgtccaaggatcatcatccttgaccgataacaacactttaagcttg  4643100                                                         <<<<<<<<<GATA-2                                                         <<<<<<<<<GATA-3                                                         <<<<<<<<<GATA-4                                                         <<<<<<<<<GATA-1         <---------ZAT14              --------->MYB52(1)                ------>ZmHOX2a(1)        --------->YAB1     <---------At4g35610                     ------>ZmHOX2a(1)     <------ZmHOX2a(1)    <---------ANAC58     --------->At4g35610              <---------YAB1--------->ANAC46   --------->GLK1(2)<---------ANAC58   acaatggagatgaaacaaactggttttcaaatgcagcactatgattcctcctctactcaatccactggaggagaatcatatagtgaagttgctagcttaa  4643200           <---------ICU4                                         <----------DOF2           --------->YAB1                                        <---------DAG2          <---------ATHB12                                   <-----------GT1     ------>MYB83                                        <----------DOF2                            <     ------>MYB46(1)                                  <---------ALFIN1                            <--   <---------MYB111(1)                            <-------TEIL<-----------GT1         --------->ZAT18   --------->TOE1(2)                    <---------CCA1(2)<---------DAG2               <---------ZAT14   <---------MYB59     ----------->RAV1(1)    <---------TOE1(2)  --------->TOE2(3)    <---------ZAT18 ------->TEIL<---------MYB52(1) <-----------HVH21--------->TCP16(2)      ----------->RAV1(2)     <---   gtgaacctactaatcgttatggccacaacattgttgtcactcatctctcaggtccaccactttttaacctttttcgcctgagtaagagttcacattgctg  4643300                                               ----------->GT1                                  --------------->AGL15                  ------>ZmHOX2a(1)          <---------AHL20(2)      ===================================================================          --------->AHL20(2)     <---------ANAC58                    --------->ARR14(2)         --------->AHL20(2)      <---------ANAC46                    --------->GLK1(2)    ------->GAMYB  <---------ANAC58     <-----------RAV1(1)          <---------ARR14(2)  --------->At4g35610            <---------ANAC58    ---------->DOF2 <---------ARR11(3)  <---------At4g35610      <---------TOE2(3) <-----------RAV1(2)--------->LBD16 ---------WRKY12   <---------ANAC58     =================RAV   --------->LBD16 ---------HVH21   <---------At4g35610   <---------AtMYB61      --------->ANAC46                    -- ------ANAC46   <-----------GT1  <-----------------AGL2       <---------LBD16                 -------   cgtcaactgcatttaattttagcttatctatggtttcttgttttggtgcaggttacaaagaaaacccggaaaatcctattggaagtcattcgatatcaaa  4643400                                       <---------YAB1                                     -------->HAHB4                                     -------->ATHB1                                     <--------HAHB4                                     --------->ATHB12                                     --------->ATHB51                                     --------->YAB1                                     <---------AHL20(2)                                     <---------ICU4                              ----------->GT1                        ------>ZmHOX2a(1)                       <---------------AGL15                       --------------->AGL15                      ----------------->AG                     --------->YAB1                      ----------------->AGL1               --------->ICU4                      <-----------------AG                <---------MYB59                 <---------ARR14(2) <---------ATHB51      --------->TOE2(3)                 --------->ARR14(2) --------->ICU4      ---------->ID1           --------->ATHB12  <---------TOE1(3)        --------->WRKY38(1)          <-------TEIL<-----------------AGL1          --------->WRKY12 =======================================MADS_MADS   <----------DOF2 ------->ALFIN1<---------MYB46(3)   <---------YAB1<---------YAB1   <-----------GT1 --->DOF2--------->GLK1(2)   <---------TOE2(3)  --------->YAB1<---------YAB1                        -   ggtgtctcaagattcagtggttcttcctattgaggttaattattagactatcatctttgaccttattataaaccttgtagtagttcaagatgagactgag  4643500  Previous    Next  AGI:  At3g14020.1    Description:  CCAAT-binding transcription factor (CBF-B/NF-YA) family protein. Identical to Nuclear transcription factor Y subunit A-6 (NFYA6) [Arabidopsis Thaliana] (GB:Q9LVJ7); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G54160.1); similar to RAPB protein [Oryza sativa (indica cultivar-group)] (GB:CAA71844.1); similar to Os03g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049132.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) Range:  from: 4642975    to: 4644308    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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