Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    ------->MYC4                                                                                  <-------MYC4                         --------->ORA47(1)                                       ------->MYC3                         ------>NtERF2                                            ------->PIF5                         <---------RAP2.6(3)                                      <-------MYC2                         <---------SPL7                                           ------->MYC2                        --------->DEAR3(1)                                        <-------MYC3                   <---------ALFIN1                                               <-------PIF5                  --------->ANAC46                                               <---------TGA1a  ---                  --------->ZAT2                                   <------NtERF2 --------->TGA1a<----                <---------ALFIN1                                  ------>NtERF2  --------->O2   <----               =====================HOX2a_HOX2a                  <---------ARR14(2)             -----               --------->MYB46(3)                                --------->ARR14(2)         <--------               ------>ZmHOX2a(2)            <---------TOE2(3)   --------->At4g35610     <----------DOF2              ======================HOX2a_HOX2a               ------>ZmHOX2a(2)  <---------O2  ------              <------ZmHOX2a(2)            ---------->DOF2----------->HVH21      <---------ANAC55(2)             --------->PCF2  ------>ZmHOX2a(1)       <---------DEAR3(1)          ====================             --------->ARR14(2)            ================================================bZIP_DOF ->DOF2      <---------ARR14(2)      <----------DOF2<---------ORA47(1)           ==================bZIP_DOF   ccaatttttagttgggatccacctcgccgtcctcttctcctttactaaagtttggacggtgtgatcggctccgatttactaacacgtggactttccaccg  4571800                                ------>ZmHOX2a(2)                              --------->ARR14(2)                              --------->ARR14(3)                              <---------ARR14(3)                              --------->ARR11(3)                          ---------->DOF2                         --------->AHL20(2)   <---------ANAC58                                    <--                        --------->AHL20(2)<---------ANAC58                      <-------TEIL      --- ------>SPL7   <---------WRKY18(1)        <---------ANAC58                --------->ANAC46        <-- -------HVH21 --------->WRKY45<---------ARR14(2)                          --------->ANAC58        --- -----SPL7    --------->WRKY12<---------ARR11(3)                          --------->ANAC58        <-- ---->ORA47(1)--------->WRKY38(1)<----------DOF2                          --------->ANAC55(1)     --- ---GT1     <-------GAMYB<---------AHL20(2)   <---------ANAC46  <---------AHL20(2)              ----- --->DEAR3(1)<---------MYB52(1)<------ZmHOX2a(2)         <----------DOF2--------->ZAT6   --------->YAB1 ===================MYC_MYB  --------->RVE1(1)<---------ANAC58  --------->AHL20(2)      <---------YAB1   tccgattcaattcccgttgaccacaatttaaagatctttggtttgcttgcttatatgagctttgatttaaattaacacgaaattcatgttataataccaa  4571900                                                                                  ----------->TBP                                                                                  --------->AHL20(2)     ------>ZmHOX2a(1)                                                            <---------AHL20(2) -------ARR14(3)                                                                --------->AHL20(2) ------>ARR14(3)                                                    <---------WRKY12 -------GLK1(2)                               --------->HSFB2a(1)   <---------WRKY45                - ------>ARR14(2)                  <----------DOF2          ---------->DOF2      ----------->TBP     < -------ARR11(3)               --------->ARR11(3)        --------->YAB1       <-----------TBP      -- ------>ARR11(3)               <---------ARR11(3) --------->TOE2(3) <---------WRKY38(1)    <---------MYB46(3) ------>ARR10       ------------>CBF          <---------HSFB2a(1)  --------->WRKY18(1)     ----------   gattttcctaagacaaattagactcaataaacaaatcttttgtgaagaattttcttaaatcaaaagatggtcaactatgcatatatatataggtggtttc  4572000                                                   ------>NtERF2                            --------->ARR14(2)     <---------TCP15(1)                    --------->ANAC46               --------->PCF2                  <---------ALFIN1                <---------PCF2                ----------->RAV1(1)            <---------O2 -------->TOE2(3)------>MYB46(1)            <---------REM1(2)                                       - -----------HVH21------>MYB83  --------->ANAC46--------->ANAC46     --------->MYB52(1)          ----- ------->ANAC46--------->AtMYB61           --------->CCA1(2)        ---------->DOF2 ----------------- ->GT1   ------->TEIL       <---------ARR14(2)<---------LBD16   <-----------GT1     <----------------   aacgtcaaatgtatataccaacacatcgcaaatacgatacaaaatatacacggggcccaaaactattaactaaaggctatatagaggcccagtttggaaa  4572100                                                                       ----------->HVH21                                    <---------MYB52(1)               --------->ANAC55(2)           --                      ------>ZmHOX2a(2)                              <---------ANAC55(2)          <--                     --------->GLK1(1)                     --------->MYB52(2)                     <-- -------->MYB52(1)  <---------ARR11(3)                   <---------MYB52(1)                       <-- ----->DOF2         --------->ARR11(3) <---------ZAT6   <---------RAP2.6(3)                    ------ >AGL1            <---------YAB1   <-------GAMYB    ------------>MYB.PH3(1)                    <----- -AGL1  ---------->DOF2   --------->LBD16         ---------->DOF2 <---------MYB52(1)      <----------   aagaacggagcaaagcgtttatgatctccagagagaccgttgtgttacagacaaaagccgttagtttcgttatgtgatgggagaacatgttgttacagtt  4572200                                                        ------>MYB46(1)                                                        --------->MYB52(1)                          - ------->LBD16                   --------->ARR14(1)     ------>MYB83                                < -------ANAC58                   --------->GLK1(2)     --------->MYB55(1)                          -- -------ANAC46                  <---------ARR14(2)    <---------MYB55(2)                           -- -------ANAC58                  --------->ARR14(2)    <---------MYB46(2)                           -- --->ARR14(2)                   <---------ARR11(3)    --------->AtMYB61                            -- ----ARR14(2)      ----------->RAV1(1)                --------->MYB46(3)                           -- -GT1    <----------DOF2        <---------GLK1(2)  <-----------GT1                         <---------MYB52(1)   ccgagcaaagacttttttcaacaacattgctcaagattctctggttactcttatcaccaaacgagttggattgggttacaggtttttgtcttcgttatgc  4572300          --------->ANAC46                         --------->ZAT2          --------->ANAC58          <---------ARR11(3)  ---------->DOF2                   --------->ARR14(2) ------->GAMYB                      <---------GLK1(2)                --------->LBD16 -------->MYB46(3)                  --------->ARR11(3)              <---------ANAC58 ---------MYB55(2)         --------->HSFB2a(1)     --------->At4g35610            <---------HSFB2a(1) ---->MYB83             --------->LBD16 <---------DAG2              <---------ANAC46 ------->ANAC58     --------->GLK1(2)   <----------DOF2             <---------ANAC58 ------->ANAC58    <---------GLK1(2)<---------ARR14(2)             <------NtERF2---------->DOF2 ---->MYB46(1)<----------DOF2     --------->ANAC46 <---------At4g35610  <---------SPL7            --- ------>P --------->ANAC58 ----------->GT1         <---------ZAT2--------->ARR14(2)  <---------ZAT18   caaccaaagaacacggctttagattccgaaggttacaagatactttttcagacagctgcaaaatcaggctccgtggtactgggaaagctcgctcatggac  4572400                                                                         ----------------------->TaNAC69(2)                                                                      <------NtERF2                                                                     --------->LBD16                          --------------->AtSPL8                     ------>NtERF2                          --------------->AtSPL3                    <---------ANAC46             ----                      --------->LBD16                               <---------LBD16          <-------                     --------->ANAC55(2)                           <---------LBD16         <-------GAMYB                     <---------ANAC55(2)--------->MYB46(3)      <-------PIF5          --------->ANAC58           ------>ZmHOX2a(1)<---------ZAT14                     ------->PIF5          --------->ANAC46 ------>ANAC55(2) ------->TEIL------->TEIL    --------->At4g35610--------->ALFIN1     --------->ANAC58   acatgatcaagtcctccttgaacccgtgtctgtacttgctcaacaatcttctgaacatgtattgcaagtgccgggaattgggttttgcacgccagttgtt  4572500                                                         <---------At4g35610                                                         --------->At4g35610                                                  <---------ZAT18                                                  <---------ZAT14                           <----------DOF2        --------->ZAT18                     <---------ICU4         <---------LBD16                   --------->TOE2(3)     <---------GLK1(1)                 --------->ANAC58             --------->ANAC46       <----------DOF2    <-----------RAV1(2) --------->ANAC58<---------ANAC58 ----->ETT(2)--------->ANAC58 --------->AHL20(2)  <-------TEIL             --------->ANAC46<---------ANAC58 --MYB46(3)  --------->ANAC58 <---------AHL20(2)  --------->ZAT14 <---------AHL20(2)       <---------ANAC46   cgacagaatgcctgaacgaaacattatttcttttaattctttgatttctgggtacactcagatgggattttatgaacaggccatggaattgtttcttgaa  4572600                                          <---------ZAT14                                          --------->ZAT14                                          <-------TEIL                                        <-------PIF5                                        ------->PIF5                                       --------->LBD16                                       <---------DEAR3(2)                                      <---------DEAR3(1)                   --------->ATHB12                                      <---------DREB2C(2)               ------>ZmHOX2a(2)           <                                     <---------LBD16                  <---------ARR11(3)            -                               <---------ANAC55(2)             --------->DAG2                       <                               --------->ANAC55(2)           ---------->DOF2                       <-                               --------->ANAC46       <---------ANAC46--------->ARR11(3)      <------     --------->GLK1(2)         --------->ANAC55(1) <----------DOF2--------->ALFIN1      <-----------RAV1(1)   gctagagaagctaatttgaagctcgataagttcacgtatgccggtgcattgggcttttgtggagaaaggtgtgatcttgatttaggggaattgttgcacg  4572700  Previous    Next  AGI:  At3g13880.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G27610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16445.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4572187    to: 4574497    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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