Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->ATHB12        <---------AHL20(2)                                                 ------>ZmHOX2a(2)   <---------AHL20(1)                  --------->ANAC58                   <---------At4g35610   --------->AHL20(2)          ----------->RAV1(1)                       --------->ARR14(2)   <---------AHL20(2)         --------->MYB46(3)                         <---------ARR14(2) ->MYB83<---------YAB1 <<<<<<<<<CBP60g --------->ANAC58                 --------->ZAT14             - ->MYB46(1)            <<<<<<<<<SARD1---------->DOF2<---------LBD16     <---------ZAT14     ---------   gccaaaaaatttcattgaaaccccaaatttcaacaacaattaagcaaatcgaaactcggaatcatctaatacactgatctgctactaaatagaagaaaga  4570900           ------>MYB83           ------>MYB46(1)           -------->P          --------->MYB55(1)         --------->MYB46(3)         <---------MYB55(2)         <---------MYB111(2)         <---------MYB46(2)     <---------ATHB12                                     <------ZmHOX2a(2)   --------->WOX13(1)                                   <---------At4g35610 -------->GLK1(2)         ---------->DOF2    <-----------GT1 ->DOF2  <---------MYB111(1)         --------->YAB1     --------->At4g35610        ---------->DOF2   agaatcaatcacctaccatctaatgagcaaaagagactatcaaaattttacatcagacagatcacaatccaaatcacagagcttagaaagaaactgaaat  4571000                                                                 <------ZmHOX2a(2)                                                         ===================HOX2a_HOX2a                                                         ------>ZmHOX2a(2)                                                        ====================HOX2a_HOX2a                                                        <------ZmHOX2a(2)                                                  --------->MYB52(1) <------ZmHOX2a(1)                                                ---------->DOF2 <---------ARR11(3)                                            <----------ID1      --------->ARR11(3)                                            ----------->GT1 --------->ANAC46                  -------                                        ---------->DOF2<---------ARR14(2)        <---------At4g35610               <------MYB46(1)        <------ZmHOX2a(2)--------->ARR14(2)        --------->At4g35610               <------MYB83         --------->At4g35610<---------TCP20      --------->YAB1 --------->CCA1(2)   cgaaaacgagtaacgcttggtcaaaacgaaaactgatcagatcaaagcgaaaaaacggatccacgagatcaggaacatttatgagcagagaagagatgga  4571100                                 --------->ARR14(2)                            --------->ANAC58                          ---------->DOF2                        ------->GAMYB                                 ------>ZmHOX2a(2)                       --------->ANAC46                              --------->GLK1(1)                       --------->ANAC58                              <------ZmHOX2a(2)             --------->ATHB51    <---------ARR14(2)                 --------->ARR11(3)      <-----------GT1  --------->ANAC58                             <---------ARR11(3)  --------->AHL20(2) --------->MYB52(1)                            <---------GLK1(1) <---------AHL20(2) <---------WRKY38(1)                     <----------ID1             <---------YAB1 --------->AHL20(2) <---------WRKY12      <---------YAB1    ----------->HVH21     <---------ZAT2 ---- ---->GT1    <---------ICU4 --------->ANAC58  ----------->TGA1     --------->GLK1(1)   <---------MYB52(1)   tatataaattacccattatcgctcaacgaaacgcagatagagtgatgaatgacgaagagaatgggacagagatctctaggctcgagctcgttattgatgc  4571200       ----------->HVH21     <----------DOF2                                                                             <---   --------->ABI4(2)               --------->ARR11(3)                           <---------AHL20(2)  < <---------MYB52(1)                <---------ARR11(3)              *TSS--------->DAG2         <------ --->TEIL              ------>ZmHOX2a(1)               ---------->DOF2---------->DOF2       ------->TEIL   accggtgctttgacgactgcttctcctaaggtcataagagcttctctctaatttgacaaaagaaatatgccaaaaagtgttttttattccaacgaatttt  4571300                          ----------->RAV1(1)                          ------>MYB83                     --------->YAB1                        --------->MYB46(3)                --------->ZAT6                        <---------MYB59                  ------------>CBF   ------>MYB46(1)                       --------->ANAC46                  <---------TOE2(3)<---------MYB59             --------->YAB1                           <---------YAB1     --------->ANAC55(2)          <-----------GT1--------->ANAC46          <---------YAB1<---------AHL20(1)         <---------AHL20(2)                        --------->ICU4--------->AHL20(1) --------GT1<---------YAB1------>MYB46(1)       --------->ICU4--------->YAB1------>MYB83 ----------DOF2      <-----------GT1    <----------DOF2 <-----------GT1<-----------GT1 ---ICU4 --------->AHL20(2)   <-----------TBP   <---------YAB1--------->AHL20(2) <-------TEIL   tacttttaaaatttatcatatttttacccaacatatatagttctttagggattattattaacaataatattttttacctaatatacatactcttactaat  4571400                                                                              ----------->GT1                                                                              --------->ANAC55(2)                               <---------AHL20(2)                            <---------TOE2(3)                 <---------YAB1--------->AHL20(2)                           <-----------RAV1(2)               --------->CCA1(2)                                      --------->AHL20(2)              --------->ARR11(1)          ----------->GT1            <---------AHL20(2)              --------->ARR11(3)     ---------->DOF2                 --------->AHL20(2)              <---------ARR11(3)    --------->AHL20(2)        ----------->GT1<---------TOE1(3)      <---------WRKY18(1)  --------->ATHB12   --------->AHL20(2)   --------->YAB1           <--------   agaaatattgaccaaagatatgaatacattgatttaaataaaagaagaaaaaatactaatttgatggaaaaataattttcaggtaataacattcagataa  4571500                                                                     --------->DOF5.7(2)                                                                    --------->TOE2(3)                                                                  <---------YAB1                                                                 <---------ARR11(3)           <------                                                               <---------YAB1         --------->YAB1                                                            <---------AHL20(2)       <---------YAB1                                  ----------->GT1           <---------YAB1        <---------ATHB51       <---------YAB1        ---------->DOF2               <---------AHL20(1)     --------->ICU4     --------->CCA1(2)      --------->AHL20(2)       --------->ANAC55(2)<---------TOE2(3)     -------    <---------ARR14(2) <---------AHL20(2)            ----------->GT1<----------DOF2--------->YAB1    --------->ARR14(2) --------->AHL20(2)      <---------TOE2(3) --------->ARR11(3)<---------ICU4 -At4g35610        --------->ATHB12   --------->AHL20(2)--------->YAB1 <---------DOF5.7(2)   <-------   ttttcagatatgaatacacattgatttaaataaaagaagaaaaaatactaatgttcagtaatattattatctttaacgaaggaaattatgatatactcat  4571600                           <---------TCP15(1)                                      --------->PCF2                           --------->PCF2                                         --------->ZAT18                          <-----------HVH21                                       --------->PCF5                          <---------PCF2                                          --------->TCP16(1)                          --------->TCP15(1)                                      <---------PCF2                     <---------ICU4            <---------AtLEC2            --------->ZAT14  <---------AtMYB61 --------->ICU4   <------ZmHOX2a(1)                     <---------ZAT14 ---ICU4            <---------YAB1 ----------->GT1             <---------ANAC58   --------->TCP15(1) -->ATHB12    --------->DAG2----------------->AGL1             <---------ANAC58 <---------ZAT18 --YAB1      ---------->DOF2<-----------------AGL1  <---------ANAC46     <---------YAB1     ---------   tgcattggtagacgataaagtcattatgggtcccatgtaggaaaaatttccatggagggcaattggctggacaatactatagtgggccctacagaaaagc  4571700                                                                                  ------->MYC3                                                                                  <-------MYC2                         <---------RAP2.6(3)                                      ------->MYC2                         ------>NtERF2                                            <-------PIF5                         <---------SPL7                                           ------->MYC4                         --------->ORA47(1)                                       <-------MYC4                        --------->DEAR3(1)                                        ------->PIF5                   <---------ALFIN1                                               <-------MYC3                  --------->ANAC46                                               <---------TGA1a  ---                  --------->ZAT2                                   <------NtERF2 --------->TGA1a<----                <---------ALFIN1                                  ------>NtERF2  <---------O2   <----               --------->MYB46(3)                                --------->ARR14(2)             -----               =====================HOX2a_HOX2a                  <---------ARR14(2)         <--------               ------>ZmHOX2a(2)            <---------TOE2(3)   --------->At4g35610     <----------DOF2              ======================HOX2a_HOX2a               ------>ZmHOX2a(2)  --------->O2  ------              <------ZmHOX2a(2)            ---------->DOF2----------->HVH21      <---------ANAC55(2)             <---------ARR14(2)            ================================================bZIP_DOF             --------->ARR14(2)      <----------DOF2 <---------DEAR3(1)          ==================bZIP_DOF ->DOF2      --------->PCF2  ------>ZmHOX2a(1)      <---------ORA47(1)           ====================   ccaatttttagttgggatccacctcgccgtcctcttctcctttactaaagtttggacggtgtgatcggctccgatttactaacacgtggactttccaccg  4571800  Previous    Next  AGI:  At3g13870.1    Description:  RHD3 (ROOT HAIR DEFECTIVE 3). similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT5G45160.1); similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT1G72960.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63206.1); similar to root hair defective 3 GTP-binding protein [Triticum aestivum] (GB:AAS67855.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47076.1); contains InterPro domain Root hair defective 3 GTP-binding (InterPro:IPR008803) Range:  from: 4565419    to: 4571267    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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