Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->GLK1(2)     --------->ARR11(3)     <---------ARR11(3)   ----------->ARR10 -------->ALFIN1 ------TOE2(3) ------TOE1(3) ----->DAG2                   --------->ATHB12 --ANAC58                    <---------YAB1         ----------->GT1                       ------>MYB83 --ANAC58                <---------AHL20(2)     <------ZmHOX2a(1)     --------->HSFB2a(2) -------->P >At4g35610<---------TOE2(3)<-----------GT1  --------->YAB1           <---------HSFB2a(2) ------>MYB46(1)   aggtggagattttgatgtaaaccctatttttttcattgcataaactatcaggactagtaatttgacacatttctagcaatttctctgttaccaacaagaa  4564900                                                                              <---------ZAT2                                                                              <---------At4g35610                                                                              --------->ZAT2    -----                             ---------->DOF2                     --------->LBD16           --------->YAB1                  --------->YAB1               --------->ANAC58  <---------HSFB2a(2)      <---------ATHB12                 <---------ATHB12              --------->ANAC55(2)            --------->At4g35610               --------->WOX13(1)              --------->ANAC58  --------->HSFB2a(2)      <<<<<<<<<ARR2       --------->ANAC58 --------->ANAC58       --------->ANAC46  ------>ZmHOX2a(1)      --------->WOX13(1)       --------->ANAC46 --------->ANAC46    --------->ZAT18     <---------LBD16     --------->ANAC58       --------->ANAC58 --------->ANAC58    <---------ZAT14    <---------ANAC46     --------->ANAC58-   tgcccataaacgaaatgcaatcaaactcgcaaaaagacagagagagttcacgaaactcaccagtttcctggaagtagacgagctgcaagacaatcaaacc  4565000                                                                                                    <                                                                                                   ==                                                                                                   <-                                                                                                   --                                                ----------->GT1                                   ---                                               --------->HSFB2a(2)                               ----                                      <---------AHL20(1)                                 --------->ANAC58           ----------->GT1            --------->AHL20(1)                           ---------->DOF2---          >>>>>>>>>TBF1               --------->ARR11(3)                   <-------GAMYB --------->ANAC58      <------ZmHOX2a(1)            --------->AHL20(2)                     --------->MYB52(2) -------- ------------>AGL2        <---------At4g35610  <---------HSFB2a(2)        <---------MYB46(3) -------- --------->DOF2           --------->At4g35610 ------>ZmHOX2a(2)          <-------TEIL  --------->MYB52(1)   cagaaagaggaagaagaaaattaagctctgctcatcaaaaaatattgatcgagaaaaatacaagttttgaataagttcgttgaatgaaagaacgaaacgt  4565100 ---------------AGL15 ==================================================================================================== --------MYB59                                                                                     == --------------->AGL3                                                                              -- ------>ANAC58                                     --------->ARR11(3)            <---------TOE1(3) <- --->TEIL   <---------ARR11(3)       <---------ARR14(2)              <----------DOF2           ------ ------>ANAC58                       --------->ARR14(2)           --------->ANAC58         --------->LBD16 ------->AtSPL3    <---------YAB1   <---------GLK1(1)             --------->ANAC58       <---------LBD16 ------->AtSPL8  <----------DOF2 <-------TEIL  ---------->DOF2<------ZmHOX2a(1)  <---------TOE2(3)---   acccaattgaagaagataactttgatagcactcgatacatttccgcttgcaaagaactagagaaggagacgcttcaagggtttagggtttttctggggtt  4565200                                                                                 --------->ZAT18                                                                                 <---------ZAT14      --------->ANAC58                                                           --------->ZAT14      <---------TOE2(3)       --------->DAG2                                <----------DOF2         -      --------->ANAC58 ------->GAMYB                                    <----------DOF2             <   <---------ATHB12   <---------MYB55(2)                               <---------HSFC1(2)          -- ==============MADS_MADS   ---------->DOF2       --------->HSFB2a(2)   --------->HSFC1(2)          -- ==================================================================================================== ------------->AGL15  --------->MYB46(3)         <---------HSFB2a(2)   --------->HSFB2a(1)     ------ --------------AGL15 ------>MYB46(1)   <---------DAG2---------->DOF2   <---------HSFB2a(1)     <----- --->GLK1(1)         ------>MYB83      <----------DOF2            --------->HSFB2a(2)          <----- ------>TOE2(3)      -------->P----------->GT1<----------DOF2     <---------HSFB2a(2) *TSS    -------   tcttaatcaaggaattaagttccaacctccaaagagtgaaacttttttcttttagaaaagctaatagtctggaactttctttgtgctctgtttctgcatc  4565300        <------MYB83        <------MYB46(1)       --------->MYB59   <--------HAHB4   --------->ATHB51   <---------ICU4  <---------ATHB12  --------->ICU4 -------------->AGL15 ---------------AGL15 --------------->AGL3 --------------->AGL2                    <---------ICU4                              --------->ZAT6 ================MADS_MADS   <---------YAB1<---------YAB1                       --------->ATHB12 --->At4g35610              <---------ARR11(3)     ------------>CBF             <---------ICU4 ----At4g35610            --------->DOF5.7(2)     <<<<<<<<<<<<<<<<<LFY         <---------YAB1 ----GLK1(1)       <-------TEIL         --------->ICU4                         --------->ICU4 >TEIL <---------TOE2(3)  <---------MYB52(1)  ------->TEIL                   --------->YAB1   tcccataattaggtttacagtttcatccgttatcttaggcccattatgaattttccaatggcccaaaaactctatgctaacatgattacactataaactt  4565400                                     --------->MYB52(1)                    --------->ANAC46      <---                                     ------>MYB46(1)                       --------->ANAC58     -----              --------->GLK1(2)      ------>MYB83                --------->ARR14(2)      <-----------GT1        --------->TOE1(3)--------->YAB1                     --------->MYB52(1)<-----------GT1  ------       ----------->RAV1(2)         <---------MYB59     --------->YAB1      --------->ANAC58    <-----      --------->GLK1(2) <---------ATHB12         --------->ANAC55(2)       --------->ANAC55(2)-------  --------->YAB1      --------->WOX13(1)       <-----------GT1  <---------MYB52(1)   <----------DOF2   gcaatgagaacctgaaattctcttcaatcaacaaaaaccaaactgaatttcacttaatcaaaaaccggtttttcttcaagtaacattctttttatcagat  4565500       --------->ANAC46            <---------YAB1                                                  <-       --------->bZIP60(2)       <---------ICU4                                                    --     ------->GAMYB        --------->ANAC58                                  ===================HOX2a_HOX2a  --------->YAB1          --------->ANAC58                        --------->TOE2(3)                -- ----TEIL             --------->ANAC58                          <-----------ARR10           <-------- ---->CCA1(2)         --------->ANAC58                          --------->GLK1(2)       <------ZmHOX2a(2) --->ARR14(2)         --------->ANAC46                          <---------ARR11(3)     <---------ARR11(3) ----ARR14(2) --------->ZAT14    --------->YAB1                <---------GLK1(2)       --------->ARR11(3) -->At4g35610 <---------ZAT14   <---------ATHB12            --------->YAB1  <------ZmHOX2a(1) -------   acaataaccacatcactacagaactcgcaaacaaatcatgagtttttttgtttttgtctgcatcagaatcttagtctaggaacatacaagatcactttga  4565600                                                                                             --------                                                                                       <---------DAG2 --------At4g35610                                                                    <---------DAG2 ------->At4g35610                                                                  -------->P   ---- --------->RAV1(2)                                                               --------->At4g35610< --DOF2                                              ------->TEIL                <---------At4g35610- ---->HVH21  --------->MYB46(3)                  --------->At5g28300  --------->AtMYB61<----------DOF2   cacctgcaagagggaaccaatgccatcggagacataaaacatatggctctcggtgaatctctctgatcaacaccaaaactgagagctacctttttgaaag  4565700                          --------->ZAT18                                                        <---     ------->TEIL         <---------ZAT18                                                        <--- -->DOF2               <---------ANAC58                                                        <----- ------->GT1           <---------ANAC58                                ------->TEIL         --------- ---------DOF5.7(2)    <---------ANAC46 --------->At4g35610          <---------ZAT18   <-------TEIL -------->MYB52(1)    <-------TEIL  ----------->RAV1(1)    <----------DOF2         <---------------AtSPL3   ggtaacgaattttaagtttctagcttcgtgggctagcacaacagcttaagcttgtatacttctttgttctatgcacttgtatcaatgggtacgttttttg  4565800  Previous    Next  AGI:  At3g13860.1    Description:  chaperonin, putative. Identical to Chaperonin CPN60-like 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q93ZM7;GB:Q9LRW0); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT2G33210.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78641.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45704.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domai Range:  from: 4561524    to: 4565286    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13870.1    Description:  RHD3 (ROOT HAIR DEFECTIVE 3). similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT5G45160.1); similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT1G72960.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63206.1); similar to root hair defective 3 GTP-binding protein [Triticum aestivum] (GB:AAS67855.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47076.1); contains InterPro domain Root hair defective 3 GTP-binding (InterPro:IPR008803) Range:  from: 4565419    to: 4571267    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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