Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------RAP2.6(3)                                                                      --------->ANAC55(2)                                                                     ----------------->AGL1    ------                                                  ------->TEIL   <---------ANAC58--------->ANAC46                                    ---------->DOF2              <---------ANAC58--------->ANAC58                       <---------ZAT14      --------->ICU4      --------->MYB52(2)             ------                       --------->ZAT14<---------TOE2(3)        <-----------GT1   --------->ANAC58   tagcatcaccagaagaagaggccagttcagagagaacacaaaggtaatgttgaacccttgatgagttacttgccgtaatggccaaggcacaagggttaag  4556400                                                               <---------DAG2                                                               <----------DOF2                                        --------->ARR11(3)    <---------ANAC58                                 <----------DOF2           <---------WOX13(1)                          <-----------GT1      --------->ZAT6 <---------ANAC58                <------       ------>NtERF2 <---------ANAC58   <---------ARR11(3)<---------ANAC58                <---------- --->ANAC58          <---------ANAC58  <---------GLK1(1) --------->ATHB12   <---------ANAC58--------- --->ANAC58          <---------ANAC46  <---------At4g35610<---------ANAC58  <---------ANAC58<--------   caacttctctgcccatctcccttccttgttaccatctttggagctcttctcactagacttgattgcttttctcttgctccttgccgattttttcacctgt  4556500                                                 --------->At4g35610                                               <--------P                ======================================MYC_MYB                ========================================MYC_MYB                <---------O2                  <---------ANAC58                <---------ANAC46              <---------ANAC58                --------->O2                 <------MYB83                --------->TGA1a              <------MYB46(1)               <---------ATHB12                <---------TGA1a--------->LBD16<-------GAMYB          --------->CCA1(2)         --------->GLK1(1)     ================HOX2a_HOX2a           <------ZmHOX2a(2)         <---------GLK1(1)    <---------LBD16<---------MYB46(3)     --------->ARR11(3)     --------->HSFB2a(2) <---------DAG2   <---------MYB52(1)        <---------ARR14(2) -----RAV1(1)   ====================bZIP_DOF<---------AtMYB61 --------->ALFIN1                    <-- -GT1<---------HSFB2a(2) <----------DOF2------>ZmHOX2a(2) <-----------RAV1(2)                  <----- -->RAV1(2)   <-----------HVH21------>ZmHOX2a(1) <---------At4g35610--------->ARR14(2)   --------->GLK1(2) -At4g35610  --------->ANAC46----------->RAV1(2)<---------MYB46(3)  <---------ARR11(3) <---------At4g35610   tgtgcctcgagaaacccgtcgtggctccttttcctggactgatcgtttggttgctgaatttcaggtggaagatccaaatcaatggatggagcttctgtta  4556600                          ------>MYB46(1)    ------>ZmHOX2a(2)                          ------>MYB83     <---------AGP1                                 --------->At4g35610                         ----------->RAV1(1)<------ZmHOX2a(2)                   <------ZmHOX2a(2)                        --------->AtMYB61  --------->ARR14(2)                  <---------ARR11(1)                       --------->MYB46(3)  <---------ARR11(3)                  --------->ARR14(2)                       <---------MYB55(2)  --------->AGP1                      <---------ARR11(3)                      --------->ANAC58     <---------ARR14(2)                  <---------AGP1               <---------ANAC58    <---------ZAT14                             <---------ARR14(2)           <-------GAMYB------->GAMYB      --------->ARR11(3)                  --------->ARR11(3)          <---------MYB46(3)       <---------ZAT18                             <-----------ARR10          --------->MYB46(2)       --------->ZAT14                             --------->ARR14(3)          --------->MYB52(2)       --------->ZAT18                             <---------ARR14(3)        <--------P    --------->ANAC58     --------->ARR14(3)                 <---------ARR14(1)     --------->LBD16  --------->ANAC46     <---------ARR14(3)                 <---------CCA1(2)    <-----------RAV1(2)<---------MYB52(2)----------->ARR10                   --------->LBD16 ------>ZmHOX2a(2) -------ALFIN1 <---------ANAC58 --------->At4g35610               <-----------GT1------>ZmHOX2a(2) ------GT1--------->MYB111(1)  <-----------RAV1(1)       <----------DOF2   <---------LBD16<---------At4g35610   ccacttccaggttagttgcttcacaaccaacatatgctgcactaagatcttgactatagctttgaataaaaccatgctccggatcttgagtctgatccca  4556700                                                                                       --------->ZAT2                                                                                       <---------ZAT2                                                                                       --------->At4g35610                                                                                  --------->ANAC46                                                                                  --------->ANAC58    ------->MYC3                                                               ------>ZmHOX2a(1)    <-------MYC3                                                               ======================   <---------TGA1a                                                            --------->TOE2(3)   <---------O2                                    --------->LBD16         --------->ARR14(2)   --------->TGA1a                             <---------ARR14(2)          --------->GLK1(2)       <-   --------->O2                                --------->ARR14(2)          <---------ARR14(2)========  <---------TOE1(2)                   --------->YAB1               <------ZmHOX2a(1)   <---------At4g35610  <---------TOE2(2)                --------->YAB1  ------>ZmHOX2a(1)      <---------GLK1(2)  <------ZmHOX2a(1) <---------ALFIN1        --------->ALFIN1--------->YAB1           <----------ID1  --------->ANAC58 --   ttcccacgtttgagacccatcaaactcgtggagcaaataagaatcatcaaatcctggtaatggggataaggacacagaatcctcaagccagcttaggaca  4556800               <---------ANAC46               <------MYB83               <------MYB46(1)              --------->MYB111(2)              <---------AtMYB61              <---------MYB46(3)              --------->MYB46(2)              --------->MYB111(1)              --------->MYB55(2) ------>ZmHOX2a(2)                                         ----------->GT1  <------MYB46(1) =======HOX2a_HOX2a                --------->MYB46(3)     --------->DAG2    ----------->GT1 <-------- --------ARR11(3)   <---------ARR14(2)                   --------->DAG2     <------MYB83    <-------- =======HOX2a_HOX2a --------->ARR14(2)              <---------YAB1         --------->MYB111(1) ------->ARR11(3) <---------MYB46(3)----------->RAV1(1) ---------->DOF2    --------->MYB46(2)  ------   tgatctagagtctggtttggtggttctgtttcttccaacaacattgaatagatgatgaaaaaggtataatttgtgagtaggtgatatagtttttaaggta  4556900                                                                                          <---------ARR14(2)                                                                --------->AHL20(1)       <-----------TBP                                                                <---------AHL20(1)  ------>ZmHOX2a(2)                                                                --------->ARR11(3)  =================                                                               <---------AHL20(2)   =================                                                         <---------ANAC46          --------->At4g35610                                                         ----------->GT1           <---------At4g35610                                                        <-------TEIL          --------->ALFIN1       --------->MYB52(1)                              --------->GLK1(2)    <---------ANAC55(1)       ----------->RAV1(1)                    <---------HSFB2a(2)           <---------ANAC46  --------->CCA1(2)                           --------->HSFB2a(2) <------------CBF--------->ARR11(3) -TOE1(3)           <------------CBF      --------->GLK1(1)  <-----------TBP<---------ANAC58 -TOE2(3)  --------->At5g28300--------->MYB52(1)      <---------GLK1(2)     <---------bZIP60(2)    -- --->CCA1(2)      <------ZmHOX2a(1)  ----------->GT1----------->ARR10       <---------ANAC58    <----   taagataaacaacagtaacaggaattgaaaacaaatggatggagaattctagatgagattcgtatatatattgaaatggcgtgtgatctgcatatatagg  4557000                          <------------MYB.PH3(2)                          <---------MYB111(2)                          <---------MYB46(2)                        <-----------GT1                     ----------->GT1                 <---------AHL20(2)                <---------AHL20(2)        <------ZmHOX2a(1) --------->MYB46(3)  <-----------HVH21--------->ICU4 ==============HOX2a_HOX2a<---------MYB111(1)                                <---------YAB1         - ==HOX2a_HOX2a  --------->AHL20(2)                                         <-----------GT1        --- ------->ALFIN1<---------AHL20(2)        ----------->GT1                <---------ICU4     <--------- --ZmHOX2a(1) --------->YAB1      ----------->GT1            <-----------GT1------------>CBF      ---   agtgtgtcaaggactatattaattagtaactacctatggaaaatagttataagacttgagaaaataccatttgaatattacaatttgatttgaatgttgc  4557100                                                                    --------->TOE2(3)                                              --------->ANAC46     --------->YAB1                                           --------->ZAT18         <---------ICU4  --------->WOX13(1)                       --------->ZAT14        <---------ATHB12 ----------->CBF                           <---------ZAT14<---------ANAC58   ----------->GT1 ------>ANAC58                         <-----------GT1    <---------ANAC58  <---------TOE2(3)     --- --RAV1(1)         <------------CBF   --------->ZAT14<-----------RAV1(1)  <---------AHL20(2)      <-- ------>ANAC58    <---------ICU4   <------------CBF --------->ARR11(3)--------->AHL20(2)   ----------   aagtcaattactctcttcacttattgcagtttgggaccattgtactacactgaatatgttgcatatcaaacattatataatgttatatatgaatagtttt  4557200                --------->AHL20(2)                <---------AHL20(2)               --------->AHL20(2)     --------->CCA1(2)    <---------ARR14(2)    <---------ARR11(3)    --------->ARR11(3)    --------->ARR14(2)   -------->P           <---------YAB1                                        - ------>HSFB2a(2)        ------->TEIL <---------YAB1 <---------ZAT6                          <------- -------HSFB2a(2)    <-----------GT1--------->YAB1  <---------YAB1              --------->ALFIN1  <-- ->GT1      ----------->GT1        <---------YAB1--------->ICU4                 <---------ANAC46  <--   atagaagatttgagagattaaattatcaacctgtactatgatgatgttgtcattagtattaaacaaaaacaaggcttagattgtggggacataatatgat  4557300  Previous    Next  AGI:  At3g13840.1    Description:  scarecrow transcription factor family protein. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G49950.1); similar to Nodulation Signaling Pathway 1 protein homologue 1 [Populus trichocarpa] (GB:CAJ00014.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 4555312    to: 4556844    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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