Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <------------CBF                                                                                      --------->AHL20(1)                                                --------->TOE2(3)                     <---------AHL20(1) --------ANAC58                                 <---------ANAC58                      --------->AHL20(2) ------->ALFIN1                                 <---------ANAC58                      <---------AHL20(2) --------ANAC58           ----------->ARR10 <----------DOF2                    ----------->GT1      < --------ANAC46       <------ZmHOX2a(1) <-----------GT1               <---------ANAC46<---------ARR11(3) -ZmHOX2a(1) --------->WOX13(1)      <---------ICU4                 <---------ANAC46  --------->ARR11(3) --TOE2(3) ------------>CBF         --------->ICU4               <-----------RAV1(1) --------->AHL20(2)   tgtgtgtgtttttgtcaattaagaggaatagatttgacataatttcctttccttgatgacatttgttatgttgtgggaatatagaaaatatattgggaat  4524700                                                  <---------AtLEC2                        ------->TEIL                                          --------->ARR11(3)                              --------->GLK1(2)                                          --------->ARR14(3)                          <---------TOE2(3)                                          <---------GLK1(2)                      <---------MYB46(3)          <---------ICU4 --------->ANAC58 <---------ARR11(3)                 --------->ATHB12         --------->ICU4  --------->ANAC58 <---------ARR14(3)                <---------AHL20(2)     -- ---------TOE2(3)--------->AtLEC2       ----------->ARR10                   --------->AHL20(2)-------   ttaagaatgcaattcttacatgcagacaacccattttcagacaagattttgtgcatgtaaactcaaactaaatgtgattttattggttaatgaatctgat  4524800                                         <---------ANAC58                                   <-----------RAV1(1)                                --------->ARR11(3)                                <---------ARR11(3)         <---------HSFC1(2)    --------->RVE1(1)                             --------->ANAC58         --------->HSFC1(2)    --------->GLK1(1)                 <---------MYB59                 <---   --------->At4g35610         <---------GLK1(1)                --------->ANAC55(2)              ---- --------->YAB1               --------->ARR11(3)                <---------ANAC55(2)       --------->At4g35610 ----->TEIL <-------TEIL      <---------ARR11(3)       ----------->GT1<----------DOF2     <---------At4g35610 -->At4g35610           ---------->DOF2  <---------ANAC58      <-------TEIL  --------->ANAC58    <---   gaatcagaagaagcttcatgtctaaacaaagagatatctgttggcatgcctaagtttgtgtaaaatacataactttgtcaagaaataacttaagctgtag  4524900                                                     --------->YAB1                                               --------->YAB1                                               <---------ICU4                                              --------->ICU4                                           <---------AHL20(2)                                          <---------WOX13(1)                                        --------->ATHB12                                       <---------AHL20(2)                                       --------->AHL20(2)  <------ZmHOX2a(1)                              <---------At4g35610 --------->YAB1         ------->TEIL  ---------->DOF2<---------WOX13(1)<---------ICU4                             <- ------GLK1(2)   ------>ZmHOX2a(1)  --------->ATHB12<---------YAB1                      --------->HSFB2a(2) ----->ARR11(3) --------->TOE1(3)  --------->ICU4<---------YAB1   <---------YAB1        <---------HSFB2a(2) ------ARR11(3) --------->TOE2(3)  <---------YAB1--------->ICU4--------->ICU4 <---------AHL20(2)  <--   attttgtcatgaaccattccttaagtaaagttagatgatgattaattgattatgatgataaggacattatgaaaaaacatttttttttttctggcaaact  4525000                                                                                       ------->GAMYB                                                                                 ------>NtERF2                                                                                 <---------ATERF1(1)                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                                 --------->LBD16                                                                                <---------ATERF1(2)                                                                                --------->RAP2.3(3)                                                                                --------->ATERF1(2)                                                                                --------->DREB2C(2)                                                                                --------->RAP2.3(2)                                                                                --------->RAP2.6(2)                                                                                --------->DEAR3(1)                                                                                --------->RRTF1(2)                                                                               --------->ERF1                                                                               <------NtERF2                                                                               <---------LBD16                                                                               --------->ORA47(2)                                                                               --------->RRTF1(1)                                                                               *TSS  <---------At4g35610                                                                               --------->RAP2.3(1)                                                                               --------->ATERF1(1)                                                                              ------>NtERF2                                                                              <---------ATERF1(1)                                                                              <---------RAP2.3(1)                                                                             <---------ATERF1(2)                                                      --------->MYB52(1)     --------->DEAR3(1)                                                  --------->AHL20(2)        --------->RAP2.3(1)                                              --------->AHL20(2)            --------->ATERF1(1)                                             <---------AHL20(2)   <---------ANAC58   --------->At4g35610                                         --------->AHL20(2)       <---------ANAC58  ----------->RAV1(1)                                         --------->AHL20(1)       <---------ANAC46<------NtERF2                           ----------->GT1   --------->AHL20(2)  <-------TEIL--------->ATERF1(2)   -- --------ATHB12        ---------->DOF2   <---------AHL20(2)--------->CCA1(2)<---------RAP2.6(2)   --- -------TOE2(3)    <------------CBF--------->YAB1--------->AHL20(2)    <-----------RAV1(1)    -------   aatgaagagattagtatgtcgaattgaaagagtttattcaaaataaaataaataaaaaacgatacgatgcgttttgttgccgccggcaactgaaaaaaaa  4525100                                                                                <---------ARR11(3)                                                                                --------->ARR11(3)                                                                              ------->TEIL                                                                           --------->ANAC58                                                                      --------->ANAC58                                                                      --------->ANAC58         ------     ---------->DOF2             ---------->DOF2       --------->GLK1(1)   --------->ANAC58  <------- ------->AHL20(2)              ----------->HVH21       <---------GLK1(1)<------NtERF2  ------>ZmHOX2a(1) ------>AHL20(2)      --------->DAG2               --------->AtLEC2   --------->ANAC46 --------->LBD16 -->AHL20(2)         ---------->DOF2         --------->MYB46(3)      --------->RAP2.6(3)    ---------   ataaaaaaaaagacatgaacacaaaaagtctctgtgaaagtgaagaaaccaccatggaaatcgaaggcgaagacggcacgaagctcttcctgaagaccgg  4525200                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                             --------                                                                                            <------NtERF2                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <---------ATERF1(1)                                                                                           ------>NtERF2                                                                                           --------->ABI4(1)                                                                                          --------->DEAR3(1)                                                                                          --------->RAP2.3(3)                                                                                          --------->RAP2.3(2)                                                                                          --------->ATERF1(2)                                                                                          <---------ATERF1(2)                                                                                          <---------DEAR3(1)                                                                                          --------->RRTF1(2)                                                                                          --------->RRTF1(3)                                                                                         --------->RAP2.3(1)                                                                                         --------->ATERF1(1)                                                                                         --------->ERF1                                                                                         --------->RRTF1(1)                                                                                         <------NtERF2                                                                                         --------->ORA47(2)                                                                                         --------->RAP2.6(1)                                                                                         --------->DEAR4(2)                                                                                        --------->At4g35610                                                                                        ------>NtERF2                                                                                        --------->ABI4(1)                                                                                        <---------At4g35610                                                                                        <---------ATERF1(1)                                                                                        <---------DEAR4(2)                                                          --------->ANAC46              <---------RAP2.3(1)                                                          --------->RAP2.3(3)           <---------DREB2C(1)                                                          --------->RAP2.3(2)          --------->RAP2.3(3)                                                          --------->RAP2.6(2)          --------->RAP2.6(2)                                                          --------->DEAR3(1)           --------->RRTF1(3)                                                          --------->DREB2C(2)          --------->RRTF1(2)                                                          --------->RRTF1(2)           --------->ANAC46                                                         --------->RAP2.3(1)           --------->RAP2.3(2)                                                         --------->ORA47(2)            --------->DEAR3(1)                                                         --------->RRTF1(1)            --------->ATERF1(2)                                                        <---------ATERF1(1)            <---------ATERF1(2)                                                       <---------O2                    <---------DEAR3(1)                                                       --------->TGA1a                 <---------ALFIN1                                                       --------->O2                   --------->RAP2.3(1)                                                       --------->ANAC58               --------->RAP2.6(1)                                                       <---------TGA1a                --------->ORA47(2)                                                       --------->ANAC58               --------->DEAR4(2)                                             ------>MYB83--------->ERF1               --------->RRTF1(1)                                             --------->MYB52(1)                       --------->ATERF1(1)                                             ------>MYB46(1)<------NtERF2             --------->ERF1    <------ZmHOX2a(1) --------->At4g35610   ----------->HVH21                         <------NtERF2<-  <---------TOE2(3)  --------->ALFIN1      <---------MYB59--------->RRTF1(3)         <---------ATERF1(1)  <---------TOE1(3) <------ZmHOX2a(1)    <---------ARR11(3)<---------RAP2.6(3)       --------->LBD16 --->LBD16        --------->ALFIN1       --------->ARR11(3)------>NtERF2             ------>NtERF2--- --LBD16 <---------ARR14(2)         --------->DEAR3(1) --------->ANAC46             --------->ANAC46 >MYB52(1) <---------LBD16       <---------ALFIN1  <-----------HVH21               --------->MYB46(3)   agttaaggatgtattcggaagaggagcgggattcaacaccgaagacctaacagtgtcacgccgccatgtttcactcgtattcaaacccgccgccgccgga  4525300     <-----------HVH21     <---------SPL7    --------->DEAR3(1)   <---------HSFC1(2)   --------->MYB46(3)   <---------HSFB2a(1)   --------->DEAR3(2)   --------->HSFB2a(1)   --------->HSFC1(2)  --------->SPL7 ------>MYB46(1) --------->MYB52(1) ------>MYB83 -----ARR14(2) ---->ARR14(2)                                                                                     -- -NtERF2  <---------ARR14(2)                                                                  ------- -->LBD16 --------->ARR14(2)                                         ----------->GT1          <------ ->RAP2.6(2)                           --------->GLK1(1)            <----------ID1           -------- >ATERF1(1)                           <------ZmHOX2a(1)          ---------->DOF2             <------- -LBD16--------->SPL7           <---------LBD16             <-------GAMYB ---------->DOF2 <---------TOE2(3) >RAP2.3(1)                    <---------LBD16              --------->At4g35610       <----------DOF2 --------MYB59              <---------ARR14(2)             <---------ANAC46     <-------TEIL<------ZmHOX2a(1) ------>DEAR3(2)           <---------GLK1(2)               <---------MYB46(3)  --------->CCA1(2)  ---   accgaaccgtccgatatggtttccttcgaggttctcgggaggaatccagtctggataagggccgttgaaaagggcaaaaagattcaaactttgaggaaac  4525400                         <------ZmHOX2a(2)        --------------->AGL15                   --------->ATERF1(2)           --------->ANAC58                   --------->DEAR3(1)            --------->ANAC46                  <------NtERF2                  <-----------------AG                  --------->DEAR3(2)             <-----------------AGL1     ----------->GT1--------->LBD16              --------->ANAC58 ------->LBD16    --------->ATERF1(1)          <-----------GT1            --------->ANAC58 -->GLK1(1)      ------>NtERF2                --------->MYB46(3)<----------DOF2 ---GLK1(1)      --------->MYB52(1)    <---------ANAC46     <---------ZAT18 ->ARR14(2)      <---------ATERF1(1) <---------ARR14(2)  <------MYB46(1)  --------->ANAC58  ========= --ARR14(2)     <---------ALFIN1<---------ANAC46 ==================================================== ------>ANAC46  --------->DEAR3(1)   --------->ARR14(2)  <------MYB83   --------->CCA1(2)   <------ZmHOX2a(1)   ccgagactggagaaatcgccaccggcgatcaattttgtgtatcgggtaatcaccccatttggttcactttgaagagacgcgatgaagttatggaggagcg  4525500                                                <---------ATHB12                                          <---------TOE2(3)                                        ---------->DOF2                                    ------>ZmHOX2a(1)                                    <---------------AGL15                    <---------GLK1(1)          ----------->GT1           --------------->AGL15                   --------->ARR14(2)      =====================================HOX2a_HOX2a                      <---------ARR14(2)      <------ZmHOX2a(2)           ------>ZmHOX2a(2)                      <---------HSFB2a(2) ============HOX2a_HOX2a        --------->ARR11(3)                       --------->HSFB2a(2) ===================================================MADS_MADS           <---------LBD16  <---------ATHB12   agcattggatcatggtgaaatcgaattgaatattgatcctgttaaaggtaatcaattttgcaacttgatgtgtttctggatttgtgtcccaataaacaac  4525600  Previous    Next  AGI:  At3g13780.1    Description:  similar to SMAD/FHA [Medicago truncatula] (GB:ABN05826.1); contains InterPro domain SMAD/FHA (InterPro:IPR008984) Range:  from: 4525079    to: 4526221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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