Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ------>MYB46(1)                                                                         ------>MYB83                                                                         --------->MYB52(1)                                                           <-------TEIL<---------MYB59                                                 ---------->DOF2 <------ZmHOX2a(1) ------>ZmHOX2a(2)                      --------->LBD16   ==============HOX2a_HOX2a                 - ------ZmHOX2a(2)                     <---------LBD16     <------ZmHOX2a(2)                         < ------->ARR14(2)                    --------->MYB52(1)  <---------ARR11(3)                         < ----->ANAC58                       ----------->HVH21    --------->ARR11(3)                        <- ----->ANAC58                     --------->ANAC58       --------->ARR14(2)     ---------->DOF2    <- ---->SPL7     --------->TOE1(3)  --------->ANAC58 <---------TOE2(3)   --------->AtMYB61        <---- ---SPL7       --------->TOE2(3)  --------->bZIP60(2)    <---------ARR14(2)  ----------->GT1   <----- -->ZAT18     ----------->RAV1(2)<-------TEIL    --------->MYB52(1)  >>>>>>>>>MYB2     <----------CDC5   cgatcgtcgatttgaaacctgaacaccttgagaggcacatcacggagaaaataaaggaagatccataggaaaaccaaaccggtaaagacgatgagcgagg  4493300                                                        --------->ANAC46                                                        --------->ANAC58                                                        --------->ANAC58                                                   <---------ICU4                                             <---------ANAC58                                             --------->ANAC55(2) -------->At4g35610           <-------TEIL   <---------ANAC58 -------GAMYB--------->At4g35610        --------->ATHB12<---------ANAC55(2)   <---------YAB1 ---------At4g35610        <---------ANAC46  ----------->GT1          <---------ARR14(2) --------DEAR3(2)          <---------ANAC58  <---------ANAC55(2)      <---------ARR11(3) --------MYB46(3)    --------->GLK1(2) <---------YAB1  <---------LBD16--------->ARR14(2)            < -------HVH21<---------At4g35610  <---------ICU4  --------->ICU4--------->ANAC58                   -- ----ZAT2<---------ATHB12  <---------ANAC58  <---------ANAC46   --------->ANAC58<---------GLK1(2)  <-   tcggatgccaaatcaagctgaagaatatgacgttcaagattacgattgcgtaattactacggaagtaagcaagatttgtcttgattcttgagaaaacatc  4493400                                                          <-------MYC3                                                          ------->MYC2                                                          <-------PIF5                                                          ------->MYC3                                                          ------->PIF5                                                          <-------MYC2                                                         <---------ANAC58                                                         --------->ALFIN1                                                         <------NtERF2                                                         <---------TGA1a                                                         <---------ANAC46                                                         <---------ANAC58                                                         ==========================bZIP_DOF                                                         ========================================MYC_MYB                                                        ------>NtERF2                                                       <---------ANAC46                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                     <---------DEAR4(2)                         <---------ZAT6             --------->ATERF1(1)       <---------MYB52(1)----------->GT1            <---------RAP2.3(2)      <-----------HVH21<---------ANAC46             --------->ALFIN1                        <--------     <---------ANAC46  <---------ANAC58             <---------DEAR3(1)                     <---------ANAC58    <------NtERF2      <---------ANAC58            --------->At4g35610                   <---------ANAC46   ------>NtERF2     --------->REM1(2)            --------->ALFIN1                       <---------ANAC58  --------->ANAC58   <---------ZAT14             <------ZmHOX2a(1)                    ---------->CDC5  --------->ANAC58<---------ANAC46             --------->LBD16                      <---------ANAC58  --------->DEAR3(1) --------->ZAT14          <---------HSFB2a(2)                   <---------ANAC46 --------->ATERF1(1)--------->ALFIN1          --------->HSFB2a(2)                   <---------ANAC58 ---------ATERF1(1)--------->LBD16            <-----------RAV1(2)       <----------DOF2  <---------ANAC58 ------->ARR14(2) <---------O2             --------->ANAC46   <---------ANAC58   <---------MYB52(1) --------ARR14(2) --------->O2            --------->MYB46(3)  <---------ANAC58<-------TEIL <---------ANAC58   ggagacgccgtgaggtagtcccgtggagtgtaaatcgaacatcaccctccaggagcggcgcgtggctagtccgtctttgatacgttgcttagcgcgtgag  4493500                                   =======================MYC_MYB                                   --------->TGA1a                        <-------TEIL --------->ALFIN1                     --------->GLK1(1)                     --------->At4g35610                    --------->ARR14(2)                       --------->ICU4               <---------TOE2(3)                   <------NtERF2   <---------ANAC46          <---------MYB52(1)         --------->ICU4                  --------->LBD16  <---------TGA1a      --------->ANAC58          <---------WOX13(1)                 <---------ANAC46  <---------bZIP60(2)  --------->ANAC46        --------->ATHB12                <---------LBD16    --------->O2         --------->ANAC58     <---------ANAC58               --------->MYB52(1)  <---------O2    <---------MYB52(1)        <---------ANAC58 ---HVH21   <---------At5g28300 ----------->HVH21 <-------GAMYB         --------->At4g35610----------   atagactcgtgattcactgccggagatgcatgagacgacgtggtaatctcgtcgttgttcgccattagtgaataagatgacttgattgaaataatgtaaa  4493600                                                                                              -------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                <---------AHL20(1)                                                                                <---------AHL20(2)                 <-----------GT1              --------->ARR11(3)                --------->AHL20(2)        <---------AHL20(2)                    <---------ARR11(3)               --------->AHL20(2)        --------->AHL20(2)          --------->CCA1(2)                          <---------AHL20(2)       <----------DOF2             <---------AHL20(2)            ----------->GT1--------->AHL20(1)    <---------YAB1<-----------GT1  <---------AHL20(1)          <-------MYC3  ------>MYB83  <---------ANAC58 ->GT1 <---------WOX13(1)          --------->AHL20(1)          ------->MYC3  ------>MYB46(1) --------   actgttctgatttattgttttatctctctgtgtataatatatgaagaaggtctcttgaatttgcatatggaataaaaccaaataaattagatggtgtgtt  4493700                                                   <---------REM1(1)                                                  <---------TOE2(3)             <------ZmHOX2a(1)                                                 --------->YAB1       <-----------TBP                                              --------->YAB1          <---------AHL20(2)                                             <---------YAB1           --------->AHL20(2)        -----                                            *TSS<---------ATHB51    --------->AHL20(2) <---------ZAT6                                            ------------>CBF        <-----------TBP    <---------ANAC58                      --------->LBD16      <-----------GT1          <---------AHL20(2) <---------ANAC58                     <---------ANAC46      --------->YAB1         <-----------TBP <---------REM1(1)                     <---------ANAC58     <---------YAB1<---------ANAC46        =====================  --------->TOE2(3)  <---------ANAC58  <---------YAB1   <---------ANAC58  ----------->TBP     ------- ---->GT1           <---------LBD16    <---------AHL20(2)    ----------->GT1---------->DOF2   <------ --->GT1          <-----------GT1      --------->ICU4   <---------ANAC58  <---------AHL20(2)<--------   aaaacattagaccgagtttttttccgtagaaattttgtgatattattacaataatgtagcgtgatgttatatatatataaaaggatgtagcgttatgatc  4493800                                                                                             ------->TEIL                                                                                           <---------ZAT18                                                                                           --------->ZAT14                                                                                           <---------ZAT14                                                                                        <---------ANAC46                                                                                    <-------PIF5           <---------WRKY38(1)                                                      ------->PIF5           <---------WRKY12                                                         <-----------HVH21          --------->WRKY18(1)                                                      --------->bZIP60(2)        <------MYB46(1)               *TSS                                         --------->ANAC58        <------MYB83                 <---------HSFB2a(2)                           <---------TGA1a ->ZmHOX2a(2)                        --------->HSFB2a(2)                           --------->ANAC58 ==HOX2a_HOX2a                       --------->LBD16            ----------->GT1    --------->O2 -->ARR11(3)                         ------>ZmHOX2a(1)      <---------AHL20(2)     <---------O2 ---ARR11(3)        ---------->DOF2 <---------ANAC46       <---------AHL20(2)      --------->TGA1a -YAB1 --------->MYB59              <---------LBD16        --------->AHL20(2)    <---------ALFIN1   tgattcaatttggtcaatgtctgaaagtcgatcgagttcctggaatatgaagttggaagaattaaatagaaaaacttggtctgccacgtccagtgtactt  4493900                                                                        --------->ANAC55(2)                                                                        <---------ANAC55(2)                                                                        --------->ANAC46                                                                 <------MYB46(1)                                                                 <------MYB83                                                             --------->ICU4                                                             <-----------RAV1(1)                             =================================HOX2a_HOX2a         <-----------GT1               --------->ARR11(3)    --------->ETT(2)   ------>ZmHOX2a(2)     <----------DOF2      <-             <---------TOE2(3)       <---------ETT(2)  <------ZmHOX2a(2)--------->ANAC58        <----     <---------ANAC58        <------ZmHOX2a(1)        --------->ARR11(3)--------->ANAC55(1) <--------     <---------ANAC58        ==================================HOX2a_HOX2a <---------ALFIN1 <--------     <---------ANAC46      <---------TOE2(3)        <---------YAB1    --------->CCA1(2)<---------MYB52(1)    --------->ATHB12<---------LBD16  <<<<<<<<<<AtTINY2<---------ARR11(3)--------->ANAC58<---------MYB52(1)   gagtcttgagtggataagattatggggatgaggatgatgtcgatagacgtagttaagatcgtaatgttggtgatacgccactttaaaccggtttgcttct  4494000                                ------>NtERF2                                <---------ATERF1(1)                                --------->LBD16                <---------MYB46(3)               <---------ANAC46--------->DEAR3(1)               <---------ANAC58<---------DEAR3(1)               <---------ANAC58--------->RAP2.3(3)               <---------DEAR4(1)               <---------DEAR3(1)<------NtERF2               <---------RAP2.6(2)        --------->At4g35610               <---------DREB2C(2)        <---------At4g35610              <---------ABI4(1)--------->RAP2.3(2)            <---------DEAR3(1) <---------ATERF1(2)     <------NtERF2--------->ALFIN1        <---------ZAT2    ------>NtERF2 <---------AtMYB61       --------->ZAT2   <---------RAP2.6(2)         --------->ATERF1(2)   <---------ANAC46----------->GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ATERF1(2)        --------->ERF1----------->HVH21   <---------ATERF1(2)        <---------LBD16  <---------ANAC46   <---------DEAR3(1)         --------->RAP2.3(1)  <---------LBD16<------NtERF2--------->DEAR4(2)  --------->RAP2.6(3)         --------->ORA47(2)                                                    - --------WOX13(1)<-------GAMYB<------NtERF2 ----------->TGA1                                       <- -----YAB1  --------->ALFIN1  --------->ATERF1(1)                            <---------MYB52(1)   <XX -ANAC58  <-----------RAV1(1)<---------ATERF1(1)                           <---------ZAT6        <--- -ANAC58  --------->ALFIN1   <---------RAP2.3(1)    --------->SPL7      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aattggcggcaagtgtggcggtggtattaagcgccggcgaagggagctgacgcgtacaaagatgtgtatgctcaatactgttagaccatctccatcagta  4494100                                 --------->AHL20(2)                                 <---------YAB1                                 <---------AHL20(2)                             --------->AHL20(2)                             <---------AHL20(1)                             --------->AHL20(1)                             <---------AHL20(2)                           <---------TOE2(3)                          --------->YAB1                          --------->AHL20(2)                        <---------YAB1                        <---------AHL20(2)                        --------->AHL20(2)                   --------->AHL20(2)                        <---------AHL20(2)               <---------YAB1                   <---------At4g35610                       --------->TOE2(3)       --------->AHL20(1)                         --------->At4g35610                     <---------AHL20(1)        --------->AHL20(2)                         xxxxxxxxxxx                     --------->AHL20(2)        <---------ARR11(3)                         --------->ZAT2                     --------->AHL20(1)        <---------AHL20(1)                     --------->MYB52(1)                     <---------AHL20(2)        --------->ARR11(3)             --------->YAB1             <---------AHL20(2) <---------AHL20(2) <---------AHL20(2)         -------->HAHB4             --------->AHL20(2) --------->AHL20(2)<---------AHL20(2)         <---------YAB1xxxxxxxxxx --------->DOF2   --------->AHL20(2)          --------->CCA1(2)            --------->YAB1 xxxxxxxxxxx -----ZmHOX2a(1)  <---------AHL20(2)         <---------ARR11(3)           <---------------AGL15 XXXXXXXXXXXXXXXXXXMIR426 <---------AHL20(2) --------->ARR11(3)   ----------->GT1  <------ZmHOX2a(1) ------TOE2(3)   --------->AHL20(2)  <---------ICU4--------->AHL20(2)     --------------->AGL15   aggaaagtttttcaaaaaattaaaatattaatattttaattaagacagatatattaattgttatttaatagttaaactaataataggataacagctgtcc  4494200  Previous    Next  AGI:  At3g13710.1    Description:  prenylated rab acceptor (PRA1) family protein. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G13720.1); similar to prenylated rab acceptor family protein [Thlaspi caerulescens] (GB:AAY18432.1); contains InterPro domain Prenylated rab acceptor PRA1 (InterPro:IPR004895) Range:  from: 4490635    to: 4493838    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13700.1    Description:  RNA-binding protein, putative. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42240.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42240.2); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G42240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45719.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 4491015    to: 4493744    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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