Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <-------GAMYB                                                                                <---------MYB46(3)                                                                              <-------GAMYB                                                                        <-------GAMYB                                 --------->At4g35610            --------->ARR11(3)                                 <---------At4g35610            --------->AHL20(1)       <---------ARR14(2)                           <---------LBD16                      <---------ARR11(3)    --------->YAB1                        ---------->DOF2                    ------>ZmHOX2a(1)<---------ANAC46                      ---------->DOF2                     --------->TOE2(3) <---------YAB1                  --------->ANAC58   <---------ANAC46  <---------ARR11(3)   <---------TOE2(3)                  --------->ANAC58   <---------ANAC58  --------->ARR14(2)   <---------TOE1(3)                 --------->SPL7 <---------MYB46(3)     --------->ARR11(3)<---------ARR14(2)               <---------SPL7<---------MYB46(3)        <---------ARR14(2)--------->ARR14(2)              --------->TOE1(1)<--------P         ----------->GT1     <---------TOE2(3) <---------CCA1(2)             --------------->AtSPL8  <---------ANAC58 --------->GLK1(1)<---------MYB46(3)--------->ARR14(2)  XXXXXXXXXXXXXXXXXXXX>MIR4243<-------GAMYB--------->CCA1(2)    <---------AHL20(1)   <---------YAB1   gctaaaatcgtagacttcgtacccaaaaacgcggttgctgcttggatacaaatcgaaaatcctcaatattttgtggttacggttgttatcatatccaaga  4478300                                       <---------ALFIN1                                      --------->MYB46(3)                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                         ------           <---------CCA1(2)        ------->TEIL                                              -------     --------->ARR14(2)             <---------ARR14(2)                                    ------>ZmHOX2a(1)     <---------ARR14(2)     <---------LBD16                                        --------->ZAT14     ------>MYB83<---------MYB52(1) --------->ARR14(2)                   ---------->DOF2 --------->TOE2(3)     ------>MYB46(1)        --------->HSFB2a(2)           --------->MYB52(1)      <-----------RAV1(1)   <---------MYB59          <---------HSFB2a(2)     ----------------->AGL3  --------->ZAT18   <------   gcatacctatcttctatctggtaattgtttctcggatggatccacctagtttgccccaaataagggttccataccaagagccctgtgttgtccttaatga  4478400                                                                                             <-------                                                                                           <---------                                                                                          --------->ANAC46                                                                                      ------->GAMYB                                                                                     <---------ALFIN1                                                                                    -------->P                                                                                    ------>MYB46(1)                                                                 <----------DOF2    ------>MYB83                   --------->At5g28300                          <---------ANAC58  ------->GAMYB<-----              ----------->HVH21                                 <---------ANAC58  --------->AtMYB61    <------ZmHOX2a(1)                                       <---------ANAC58     <---------MYB55(2) -->HAHB4    <-----------HVH21                              <---------ANAC58     --------->MYB46(3) -->ICU4     <-----------TGA1                   ------>ZmHOX2a(2)<---------DAG2 --------->ANAC58 ---ATHB12  --------->ANAC46       --------->ARR11(3)<---------ZAT14            --------->ANAC58   tgcataggactaaaccgtcacagtgaaaaacttgagagacctcgatttgatcgagtttacttacttgctttatagatggctcaaccaactccccgtcgtc  4478500                                                                                       <---------DAG2                                                                                       <----------DOF2                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                   <---------MYB52(1)                                                             --------->LBD16      <-------GAMYB                       <---------YAB1                      <---------LBD16       <-----------RAV1(1)                       <---------AHL20(2)                --------->ANAC46      --------->At4g35610                =====================================HOX2a_HOX2a               <---------At4g35610               <---------ARR11(3)                  --------->YAB1           <---------At4g35610        <---------ANAC46                        --------->REM1(1)           <---------ZAT2  <---------YAB1<------ZmHOX2a(2)               --------->YAB1              --------->At4g35610 --DEAR3(1)    --------->ARR11(3)             ------>ZmHOX2a(1)             --------->ZAT2          - --HVH21<---------ANAC58       --------->MYB46(3) <---------YAB1           <-----------RAV1(1)      - -NtERF2<---------ANAC58--------->ATHB12     --------->TOE2(3) <---------GLK1(2) <---------MYB46(3) <   gtttctgattccttggagatcaaatttcattgaacaaacccttgaatccttcatcataaaccccagaaacttattctctgctgctgttgcttttctacca  4478600                           <---------DAG2                           <----------DOF2                        <---------ALFIN1  ------>ZmHOX2a(2)                                    ------                        --------------->AGL15                                                 ------>MYB83                        <---------------AGL15                                                 ------>MYB46(1)                       ----------------->AGL2                                               <--------                       ----------------->AGL3                                    --------->ARR11(3)                       <-----------------AGL3                                    --------->ARR14(2)                       <-----------------AGL1                       --------->ARR14(2)      <--------               ---------->DOF2          <---------ARR11(3)          <---------ARR14(2) ==============       <---------DAG2  <-----------------AGL2                   <------NtERF2    <-----------ARR10       <----------DOF2 ----------------->AGL1                   <---------LBD16  <---------ARR11(3)-- -------->GLK1(2)      ----------------->AG                     --------->At4g35610    ------>ZmHOX2a(1) -------->ARR14(2)     <-----------------AG  ---------->DOF2    <---------At4g35610    ============== ---------ARR14(2)  --------->GLK1(1)   --------->ARR11(3)  <-----------HVH21    <---------ARR14(2)<-   caaatctgacttttcgataaagagttccacttttggcaagtagatcgtatagccctcagagatgtcagcggaaccctagagagtatctcctctaccaaat  4478700         ------>ZmHOX2a(2)        <------ZmHOX2a(2)       <---------ARR11(3)       --------->ARR14(2)       --------->ARR11(3) <---------HSFB2a(2) --------->HSFB2a(2) --->ARR14(2) -MYB59<---------ARR14(2) -MYB111(1) ===============HOX2a_HOX2a                        --------->ALFIN1 --------->RAV1(2)                               --------->ALFIN1 ==============HOX2a_HOX2a             ------------>CBF            --------->DAG2 --------ANAC46            <----------DOF2    <---------TOE2(3)  ---------->DOF2 <---------ANAC46   cgcctggaagatcgcccatggtcgtcattctttcaagcttcagcaatttaggtgtggacgttcttaaaaaaggctgttctattatgtggatgaagaagct  4478800                                                                                                    <                                                                                                    -                                                        --------->ZAT2                              <                                                        <---------At4g35610                         <                                                        --------->HSFC1(2)                         <-                                                        --------->At4g35610                       <--                                                        <---------HSFC1(2)                       <---                     <---------ANAC58                --------->LBD16                            <----                     <---------ANAC46               --------->LBD16       ---------->DOF2       <----                     <---------ANAC58              <---------HSFB2a(2) <----------DOF2          <----              ---------->DOF2          --------->ANAC58 --------->HSFB2a(1)                    ------            --------->TOE2(3)          --------->ANAC58 <---------HSFB2a(1)                    <-----   ctattaacaaaaaacctaaagttccttgagacttgagagacactctacttaatcccgaagcttccatttttatctttagagcccatattactggagtttg  4478900         --------->MYB55(2)         --------->MYB52(2)         --------->MYB111(2)       <-------GAMYB      <---------MYB46(3)       <---------MYB52(1) <------MYB46(1) ------MYB83              <------MYB83                               <---------YAB1 -------->MYB52(2)       <---------AtMYB61                           --------->ICU4 ------MYB46(1)       <-----------RAV1(1)                         --------->TGA2(2) ---------MYB46(3)    <---------ZAT6                             <-----------TGA1 --------AtMYB61  <--------P                                    --------->ANAC58 ------P <---------MYB46(3)                   <------------CBF  --------->ANAC58 ----GAMYB      <---------MYB46(3)           <---------ICU4     --------->ANAC46 --MYB46(1)   <---------ANAC58          <---------ZAT18 --------->KAN4(2) --MYB83 <-----------RAV1(1)     <---------ARR14(2)    <----------TaMYB80            --------->ANAC46 -----MYB46(3)<---------ANAC58   --------->ARR11(3)    --------->KAN4(1)          <---------REM1(2) --->MYB59<-------GAMYB <--------P      --------->ZAT18<---------KAN4(1)         --------->AtLEC2>>>> ----AtMYB61  <---------ANAC46  <---------CCA1(2)   <---------At4g35610        <---------------AGL15<   gttggtttcggttgttgctggttagtgttggtttatatctggttcactaattgcagcatattccaaacgtcatcatcgattccatacacagaaacattct  4479000                                                    --------->YAB1                                               <------NtERF2                                           ------->GAMYB                                          --------->ANAC58                                          --------->ANAC58                                        --------->MYB52(1)                                        ---------->DOF2                                           ---                         --------->HSFB2a(2)  ------>NtERF2      <---------AHL20(2)             <----                 <---------ANAC55(2)    <-----------GT1          --------->AHL20(2)            <-----           --------->AHL20(2)  --------->YAB1--------->DEAR3(1)  --------->AHL20(1)           <------    <---------ANAC46     <---------HSFB2a(2) --------->RAP2.3(3)--------->AHL20(2)           <------- >>>>>>>>>>>>>LFY--------->ANAC55(2) --------->YAB1 <---------ICU4                        ----------- ------------CBF --------->ANAC46  --------->AHL20(2)    <----------ID1  ---------->DOF2--------->ANAC55(2)   tccattgtttgtataaattacgcagttttagaaacataaaaataacgcccccaaaaatgacaacaaaaaaattagaaaagagaagaatttatgtgatggt  4479100                                                                             <---------DAG2                                                                            --------->HSFB2a(1)                                                                        <---------MYB52(2)                                                                       --------->ANAC46                                                                       --------->ANAC58      --------->ARR14(2)                                               --------->ANAC58      <-----------ARR10                                          --------->At5g28300      --------->GLK1(2)                                  <---------------AGL15     <---------GLK1(2)                                   --------------->AGL15 ------>MYB52(2)                                        ----------------->AG<---------HSFB2a(1)   --- ----P<---------ARR14(2)                                ----------------->AGL1                  <<<<< --GAMYB                                                ----------------->AGL2                  <<<<< ---MYB46(3)                       --------->GLK1(1)    <-----------------AGL3                  <<<<< --YAB1                            <---------GLK1(1)    ----------------->AGL3<----------DOF2 ------- >HVH21               ----------->HVH21       --------->ICU4    ----------->GT1         <------NtERF2   tagtggagaatctgaacttctctcttgacatgttcagatttctctgcaaaaatgagttaccaaaaacagtaacaaggaaccttttgagggggcaattggt  4479200  Previous    Next  AGI:  At3g13680.1    Description:  F-box family protein. Identical to F-box/Kelch-repeat protein At3g13680 [Arabidopsis Thaliana] (GB:Q9LID1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G17200.1); similar to S-locus F-box-like protein d [Petunia integrifolia subsp. inflata] (GB:ABX82524.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 4477296    to: 4478728    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13682.1    Description:  LDL2 (LSD1-LIKE2); amine oxidase. similar to LDL1 (LSD1-LIKE1), amine oxidase [Arabidopsis thaliana] (TAIR:AT1G62830.1); similar to FLD (FLOWERING LOCUS D), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G10390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39215.1); similar to hypothetical protein OsJ_024973 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41490.1); similar to hypothetical protein OsI_026796 [Oryza sativa (indica cultivar-group)] (GB:EAZ05564.1); contains InterPro domain SWIRM (InterPro:IPR007526); contains InterPro domain Amine oxidase; (InterPro:IPR002937) Range:  from: 4479200    to: 4481516    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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