Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ANAC58                                  <---------At4g35610                 --------->ANAC58<---------ANAC58                              --------->At4g35610                 --------->ANAC58<---------ANAC58                           <-------TEIL <---------At4g35610         <---------ANAC58<---------ANAC46     ----------------->AGL1 --------->At4g35610 ----------->RAV1(1)    <------ZmHOX2a(1)  --------->GLK1(1) --YAB1         XXXXXXXXXXXXXXXXXXXXX>MIR864-3P--------->ALFIN1<---------GLK1(1)       ------>ZmHOX2a(1) >HVH21        ---------->DOF2  --------->ZAT2 <---------ZAT6 <---------ARR11(3)       <-----------RAV1(1)   tgcagctaaaccaatgccaaagccaacaatgccttgctcgcagagaggagtgttgaaaactcgagatttcccaaaacgttcagctaatcctgttgtacat  4384000                                                   --------->ANAC55(2)                                                   --------->TGA1a                    --------->ARR11(3)             --------->O2                    <-----------ARR10              <---------O2             <---------ARR14(2)                    <---------TGA1a             --------->ARR14(2)                  <-------------DYT1            ------>MYB46(1)                    --------->ANAC58            ------>MYB83                       --------->ANAC46          <---------MYB111(1)           <---------ARR11(3)          --------->AtMYB61        --------->TOE1(2)                                              <--       --------->AtMYB61           --------->TOE2(2)                   --------->YAB1      --------->TOE2(3)      --------->MYB46(3)   --------->LBD16     --------->ANAC58       <---------YAB1       --------->TOE1(3)    --------->ANAC46<---------ARR11(3)  --------->ARR11(3)      <-------TEIL             ------->TEIL   cggaagacaccaccaaatccaacatcttccccaaaaacataagaccttcactcaagtgactccaaatacattataaaaaccaattcaaatgtaccttaga  4384100                                  --------->ARR14(2)                                  <---------ARR14(2)                                                <                                  --------->GLK1(2)              <---------WOX13(1)                <-      ----------->GT1            <------ZmHOX2a(1)        --------->ARR11(3)                    -----   <------ZmHOX2a(1)   --------->At4g35610  ---------->DOF2    --------->ATHB12               <------  <---------YAB1    ---------->DOF2 ------>ZmHOX2a(2)     <---------ARR11(3)                 <------- --------DOF2  <----------ID1--------->DEAR3(1)    <---------ANAC46                 <-------TEIL<----   ctttaggattgaaaaatgcgagaaaagctcaccgaggatcggtctctaaagcgatgtgaagagcttgattaatagcagagtatagattcatcgatttacc  4384200                                                                                              <------                                                                                              ------>NtERF2                                                                               <---------ANAC58                                                                               <---------ANAC58    --                                                                               <---------ANAC46<-----                                                                          --------->GLK1(2)  --------                                                                          --------->ARR14(2) --------                                                                          <-----------ARR10  --------                                                                          <---------ARR14(2) <-------                                                                     <------NtERF2           --------                                                                    ------>NtERF2            --------                                                                    ----------->RAV1(1)      --------       <-------TEIL  <---------ETT(2)                               --------->LBD16         ---------      --------->CCA1(2)                                           <---------LBD16           ---------     <---------ARR14(2)                                         ------>ZmHOX2a(2)           ---------     --------->ARR14(2)           <---------CCA1(2)           <---------ARR11(3)           <---------ATERF1(1) -----------HVH21    --------->ETT(2)                  ---------->DOF2   <---------ARR14(2)------>NtERF2 ---------DOF2    --------->DEAR3(1)                --------->LBD16--------->LBD16      --------->At4g35610 ---------->AGL15 ------->GAMYB ------>ZmHOX2a(1) <---------LBD16 --------->LBD16       <---------At4g35610 ---At5g28300    --------->DEAR3(2)              --------->MYB52(1)--------->ANAC46     --------->ZAT2 ----GT1         --------->MYB46(3)      <---------WRKY18(1)  --------->ARR11(3)       <---------ARR11(3) -----------AGL15<------------AtMYB77   ----------->HVH21--------->ICU4  <---------GLK1(2) --------->At4g35610   actttcagatacattttcaaccgtcgatagcatcctatatccatgaccagagaccggaaaagatgatccccggcagaatctgcgtacaagagctgccgcc  4384300  --------->ANAC58  --------->ANAC46  --------->ANAC58 ---RAP2.6(3) ------->ARR14(2) -NtERF2 ->ATERF1(2)                    <---------ATHB12 ->RAP2.3(2)                <---------ATHB12 ->RAP2.6(2)                --------->MYB46(3)                                            <------ZmHOX2a(2) --ATERF1(2)               ------>MYB46(1)                           ============================HOX2a_HOX2a ->RAP2.3(3)               ------>MYB83                              ------>ZmHOX2a(1)   --------->ARR11(3) ->ANAC46                 --------->MYB52(1)              --------->TOE1(3)       --------->LBD16 ->DEAR3(1)              --------->AtMYB61               <---------At4g35610     --------->HSFB2a(2) >ERF1                   --------->DEAR3(1)   <---------ZAT14    --------->ARR14(2)      <---------ARR11(3) >RAP2.3(1)             --------->MYB46(3)    --------->ZAT14---------->DOF2     <---------HSFB2a(2) >ATERF1(1)       <----------DOF2 --------->WOX13(1)     --------->At4g35610    <---------LBD16   atttacgcaaaatttagacgctttccaccaacgaatcaatctgaaaactacagaggtttagcttaaagttcctcaagtttcttctggagaagatcacaca  4384400                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                          <---------ARR14(2)                 --------                                                          --------->ARR14(2)                 --------                                                        --------->HSFB2a(1)                  <<<<<<<<                                                    --------->ANAC58                         --------                                                    --------->ANAC55(2)                      <-------                                                    <---------ANAC55(2)                      --------                                                    --------->ANAC58                         --------                                            <----------DOF2         --------->DAG2   <---------STY1(2)                                           *TSS    <---------LBD16 ==================================                                  --------------->AtSPL3--------->HSFC1(2)      --------->ANAC58                                  --------------->AtSPL8<---------HSFB2a(1)     --------->ANAC58    <                    --------->AtMYB61    --------->ARR11(3)   --------->LBD16   --------->GLK1(2) ---            <---------AtLEC2      <---------------AtSPL8<---------HSFC1(2)  <---------HSFB2a(2)   <--       <----------DOF2           ---------->DOF2<-----------HVH21  ---------->DOF2   --------->STY1(2)   aatttgatacttttggatgaaaccaaaacagacatgaaagtactatcttttgtcacggagtttccgagataaagcgttggagaagctatctagccacgtc  4384500 -----HVH21 -----TGA1 --TGA1a --O2 ->bZIP60(2) ->ANAC58 ->TGA1a ->ANAC58                             <------------CBF <<AtbZIP1                           --------->ATHB51 ->bZIP60(1)                         --------->ATHB12 --bZIP60(1)                        <---------YAB1                                  --------->ANAC46 ->O2                             --------->YAB1                                    --------->ANAC58 ->ANAC46                        <---------AHL20(2)                                 --------->ANAC58 ==bZIP_DOF    --------->ICU4    --------->AHL20(2)   --------->bZIP60(2)     <------ZmHOX2a(2) ------ZmHOX2a(2)            <-------TEIL           ------->GAMYB      --------->ANAC58  --------->bZIP60(2) ------>At4g35610         --------->At4g35610      --------->MYB46(3)  --------->ANAC58<---------ALFIN1 -------At4g35610         <---------At4g35610    <-----------GT1 --------->RAP2.6(3)<----------ID1   agatcagacaacaagtacttatttgatcagcttcatttattattgggattttaaccacatcagcaatttcggcaagatagatcaaaacgacacatcatac  4384600                                 <---------GLK1(2)      --------->ATHB12                               --------->MYB46(2)       -------->ATHB1                               --------->MYB59          --------->ATHB51            <------ZmHOX2a(2)                               --------->MYB111(1)      <--------ATHB1             --------->ARR11(3)                          <---------TOE2(3)             <---------ICU4       --------->YAB1                  <---------ZAT2<------MYB46(1)        --------->ICU4        <---------ICU4                  --------->At4g35610                  <---------ATHB51     --------->ICU4                  --------->ZAT2<------MYB83           <---------YAB1----------->RAV1(1)                  <---------At4g35610          <----------DOF2     --------->At4g35610     ----------->GT1     ---------->DOF2    <----------DOF2   ----------->HVH21<---------YAB1<-------   attggaatggtgaaatggagagctgactaaagttaggttctctcggcttctttgacaattattggtgacagcaacaaaattatgagatcaaggtcgtttt  4384700                                                --------->TOE1(3)                                                --------->TOE2(3)                                              --------->ARR11(3)                                       <----------DOF2        --------->ANAC46              <---------ANAC58                     <----------DOF2        --------->ANAC58  --------->ANAC55(2) --------->GLK1(2)      --------->At4g35610        --------->ANAC58  <---------ANAC55(2) <---------ARR11(3)     <---------At4g35610 --MYB52(1)           --------->YAB1  <---------ANAC58       <---------WOX13(1)   gttttgttacacgaaaaaaatcaacaatacttatctccttgctttgaaaatcttaaaacatggattgattcagataactttggagaatgacagaaacaag  4384800                                                                        ---------->DOF2                                                                 <---------MYB52(2)                                                                --------->ANAC58                                                                --------->ANAC58                                                            ------------------------>ANAC81                                                            --------->ANAC58                                                            --------->ANAC58                                                          ---------->DOF2                ------>NtERF2         ---------->DOF2                                 --------->AtMYB61   ---------->DOF2   acgagagaggcaaaagaccatctcaaattctaaacgactcaagagagtcaagtctgaaaccaaagcaagaaaccaaaagaaaagaaaactctgcctaaaa  4384900  Previous    Next  AGI:  At3g13450.1    Description:  DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring). similar to BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G55510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22118.1); contains InterPro domain Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II; (InterPro:IPR009014); contains InterPro domain Transketolase C-terminal-like; (InterPro:IPR015941); contains InterPro domain Transketolase, central region (InterPro:IPR005475); contains Range:  from: 4382205    to: 4384443    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13460.1    Description:  ECT2; protein binding. similar to ECT4 [Arabidopsis thaliana] (TAIR:AT1G55500.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96645.1); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 4384721    to: 4388532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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