Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      <-----------ARR10                                                 <----------DOF2                    <---------ARR11(3)                                         --------->ANAC58    <---------TOE1(2)                                                          --------->ANAC58 ---->MYB52(2)     <---------CCA1(2)                                     ------>ZmHOX2a(2) -----MYB46(3)    ------>ZmHOX2a(1)                      ---------->DOF2<------ZmHOX2a(2) ----TOE1(2)     --------->TOE1(3)             <------NtERF2           --------->ARR11(3) ---MYB52(1) <---------GLK1(1)                <---------At4g35610      <---------ARR11(3) ---------->WRI1 --------->TOE2(3)           <---------ANAC46         <---------GLK1(1)   gtttcgcagttttcgaaatccttatcttcgcttatggagaaacaatggcgctgatactacaaagatggctagagatctcataagcatgctttgtttaacc  4379400                                                  --------->ZAT14                                                 <---------ANAC46                                            <------MYB83                                            <------MYB46(1)                               --------->YAB1 <---------AtMYB61                             --------->ARR11(3)  <---------REM1(1)                         --------->YAB1     <---------MYB46(3)                            --------->MYB52(2)                    <---------AHL20(2)     <---------MYB46(3)                           <--------P               <---------AHL20(2)          <---------AtMYB61                          <---------MYB46(3)          <---------ZAT6<---------YAB1  <-----------RAV1(1)     --------->ATHB12  --------->ATHB12 <---------GLK1(1) <---------ICU4     <---------ANAC46<---------ZAT6            <-------GAMYB       <   aagaattctctagtgttttaatttttatgaaaatcatgttttgtgttggtggtgtagtcgtaacagtgatttgatttagtggggttattggttagtggat  4379500                                                                  <---------AHL20(2)                                                                  --------->AHL20(2)                                                                 <---------YAB1                                                               --------->YAB1                                                     --------->WOX13(1)      ----------->GT1<-----------GT1       ----------->GT1     --------->AHL20(2)              ------      <---------ANAC46              --------->ANAC55(2) --------->YAB1                    --------->ZAT18 -----------GT1 <---------YAB1      <---------ANAC55(2)<---------ATHB12            --------->AHL20(2)   tttaactgatgtgaaattttgattttcaattccacattatgtgatttgaaaaaatcaatgaaaaattataaatttctacttgaaaaaaaatgttcactaa  4379600                                                      --------->DAG2                                                     ---------->DOF2                                                   <------NtERF2                                                  --------->RAP2.6(2)                                            <---------bZIP60(1)                                            --------->bZIP60(1)                                            <---------O2                                            <---------bZIP60(2)                                            --------->O2                                            --------->TGA1a                                            <---------ANAC46                                            <---------ANAC58                                            ====================bZIP_DOF                                            ===============================================bZIP_DOF                                            ================================bZIP_DOF                                            <---------TGA1a                        <---------ANAC58    >>>>>>>>>>AtbZIP1                              <------NtERF2                        ----------->GT1     <---------ANAC58                              <----------                        <---------ANAC58   ----------->bZIP910(1)                         <---------RAP2.6(3)                        <---------ZAT6    <---------TGA2(2)                               <----------                   --------->YAB1        ----------->HVH21   <---------ZAT14             --------->RAP2.3(2)                  <---------YAB1         ----------->TGA1    <---------ZAT18             --------->RAP2.3(3)                  <---------AHL20(2)   <---------At4g35610   --------->ZAT18             --------->RAP2.6(2)                 --------->AHL20(1)    --------->At4g35610  --------->ALFIN1           --------->At4g35610                 <---------AHL20(1) ==================bZIP_DOF                         <---------At4g35610                 --------->AHL20(2) ---------->DOF2<---------RAP2.6(3)        <xxxxxxxxxxxxxxxxsmallRNA(i) ---->DOF2    --------->AHL20(2)--------->ZAT6--------->ALFIN1   <----------DOF2---------->DOF2   <--   atcgctaaatatgcaaaaatataatagcgttataacactaaagctgacgtggccgaaaaggagtggactttcacataaaaccgaaagacagccgtcatcg  4379700                                                                                                    *TSS                                                                                                 ----                                                                                              -------                                                                                              <------                                                                                              <------                                                      <--------P                             <------ZmHOX2a(1)                                                <---------WRKY38(1)                        <---------TOE2(3)    <---------At5g28300                         <---------WRKY12                           <---------TOE1(3) -HVH21                  <---------At5g28300   --------->WRKY18(1)               --------->DAG2 ----- -TGA1 --------->LBD16  <-----------GT1       <-----------HVH21      ----------->TBP    <----------DOF2 -------TOE1(2)      <---------ICU4       <------ZmHOX2a(1)         ------->TEIL---------->DOF2<-----   tagcattaccgcataaatttccaaaattaccctcgatgtaacaaggacggtcaagggtagcatgggtatgtatatataggtataaaggggcttaaggatc  4379800         --------->ANAC58                ------>ZmHOX2a(2)         --------->ANAC46               <------ZmHOX2a(2)         --------->ANAC58              <---------ARR14(2)       ---------->DOF2                 --------->ARR11(3)    --------->ANAC46                   --------->ARR14(2) --------->ARR14(2)                    <---------ARR11(3) <---------ARR14(2)                    --------->AGP1 ------------->AGL1              ----------->HVH21 -->ARR14(2)               ------>ZmHOX2a(1) ---ARR14(2)               =====================HOX2a_HOX2a ---ARR11(3)               ====================HOX2a_HOX2a                             --------->ANAC58 ->ZmHOX2a(2)      ----------->HVH21   <---------AGP1                                  --------->ANAC58 -ZmHOX2a(2)       --------->WRKY12   <---------CCA1(2)               <-----------GT1  --------->ANAC46   ccaaatccgaaacgcaagtcgatgacctcctctctctcacagatctaaaaaccagaagcgagagaaacaaattcactctccccttatataagcaccgatt  4379900                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               <-----                   <---------GLK1(2)                                                           ------         ---------->ID1                                                                        ------         <-----------GT1                                                                       <-----  <---------ARR11(3)                              <----------DOF2 <---------At4g35610         <------  --------->ARR11(3)                  ---------->DOF2 <-----------GT1   <----------DOF2       <------   tataaatctttttccctcttcgattctcaattctttgtataaaaggcttctccttttctcaattcttcggcttcctttcgcccaaactcttccctcgaat  4380000                                                                                                  ---                                                                                                  ===                                                                                                 <---                                                                                                 ====                                                                                                ----- ---->HSFB2a(1)                                                                ------>ZmHOX2a(1)<---- ------ARR10                                                                   ====================== ->TEIL                                                                  <----------DOF2        ----- ----ARR14(2)                                                            ============================ --->ARR14(2)       --------->ANAC46                                     ============================ --->GLK1(2)        --------->ANAC58   --------->GLK1(1)         <----------DOF2                <---- ----ARR11(1)       --------->ANAC58   <---------GLK1(1)    ----------->HVH21  ====================== ---CCA1(2)      --------->TOE1(2)<---------LBD16        <---------ARR11(3)    --------->LBD16 <----- ---ARR14(1) ---------->DOF2    <---------GLK1(1)    ---------->DOF2     ------>ZmHOX2a(1)    -------   ctttccttctcgtcttaaagctacgaaaccctagatttcggatttcttcgctatccaaaggtctgacctttaatccttttcctgagttttttcgattaga  4380100        <-------TEIL  <---------YAB1 --->ZmHOX2a(2) =============================HOX2a_HOX2a ---ZmHOX2a(2)                                                                 <--------ATHB1 =============================HOX2a_HOX2a                                      --------->ATHB51 ---->ARR11(3)                                                                 -------->HAHB4 -----ARR11(3)                                                                 <---------ICU4 ===HOX2a_HOX2a--------------->AGL15                                           --------->ATHB12 ---->AGP1     --------->TOE2(3)                     <-----------------AGL2   --------->AHL20(2) ====HOX2a_HOX2a                              XXXXXXXXXXXXXXXXXXXX>MIR1886.2  <---------ATHB12    --- ===HOX2a_HOX2a========================================================MADS_MADS     <-----------GT1 -----AGP1     <---------------AGL15         --------->At4g35610              <---------AHL20(2)  --- ====HOX2a_HOX2a       <------ZmHOX2a(1)--------->HSFB2a(2)                   <---------ATHB51  <---- ----CCA1(2)   --------->TOE1(3)        <---------HSFB2a(2)          --------->ARR14(2)   <----------DOF2 ---->ARR10    <---------DAG2     <---------MYB52(1) <-----------------AGL3   --------->ICU4 <-------   tcttatgagtttcatcaccttaagaggataagtctcgttgttttggaagatgaaatctaaaattggctctgtattctcaaataattgaaacccttttgaa  4380200                                                                           <---------ANAC58                                                               <-----------GT1                                         <---------ANAC58 <---------AHL20(1)        >>>>>>>>>ARR2 ------>ATHB12                           ------>ZmHOX2a(2)<---------AHL20(2)       --------->ATHB12 ------>YAB1              --------->YAB1 <---------ANAC58 --------->AHL20(1)      <---------YAB1 -----WOX13(1)         <-----------GT1 <---------ARR14(2)--------->AHL20(2)<---------ANAC46 --YAB1            <----------DOF2<---------ANAC46       --------->YAB1    <---------ANAC58   tgataagtctatctgataagacttttaagcatattgtcttggatcgtgtctagtgtctattatattttctggctattgcttattttgattgtgttgattt  4380300  Previous    Next  AGI:  At3g13440.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO41305.1); contains InterPro domain Methyltransferase type 12 (InterPro:IPR013217) Range:  from: 4377104    to: 4379582    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g13445.1    Description:  TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding / RNA polymerase II transcription factor. Identical to TATA-box-binding protein 1 (TBP1) [Arabidopsis Thaliana] (GB:P28147); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.2); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.1); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); similar to TATA-bindin Range:  from: 4379800    to: 4382231    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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