Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <----------TaMYB80                                                                       --------->GLK1(1)                                                                       <---------GLK1(1)                                                                       --------->CCA1(2)                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)                                                                      <---------ARR14(2)                                   <---------TOE2(3)                  ---------->TaMYB80  <---------ARR14(2)         --------->LBD16       <----------DOF2   <------NtERF2        --------->ARR14(2)  --------->ARR14(2)        --------->HSFB2a(2) <---------ARR11(3)  --------->LBD16      <------ZmHOX2a(1)    ------->TEIL       <---------LBD16  <------ZmHOX2a(1)<---------ANAC58          <---------ANAC46      <---------CCA1(2) ------->DOF2        <---------LBD16     <---------ANAC58      ------->PIF5        <---------GLK1(1) >ANAC46<---------HSFB2a(2) --------->ARR11(3)<---------LBD16  <-------PIF5        --------->GLK1(1)   ttaagctatcccagaacaactcttcaggaacatctttaagaatgcttagccggagagctagagctcgtggaggatatgcgagaagaattctgtatccctt  4296600                                                                                             --------                                                                                             --------                --------->ZAT14                                                           <---------ZAT14                --------->ZAT18                                                           --------->ZAT14                <---------ZAT14                                                --------->GLK1(2)                <---------ZAT18                                               <---------ARR11(3)              <---------------AtSPL8                                          --------->ARR14(2)              --------------->AtSPL8                                          <---------GLK1(2)             <---------ANAC46                                          <------NtERF2      <---------ZAT18            --------->DAG2                                            --------->LBD16     --------->ZAT18           ---------->DOF2                           <---------YAB1 <---------LBD16   <---------ICU4        ----------->GT1            <---------At4g35610        <---------YAB1  <---------ARR14(2)        <---------ANAC46 ---------->DOF2------>ZmHOX2a(1)  <---------YAB1   ----------->ARR10--------   cttctctatgtcgtaaagtgtactagctaaagttttcaggtccttagaactggttatgagcattatagtagccggagcaagattctcatcagtccactca  4296700                                                                                                   --                                                                                                 <---                                                                                                 ----              --------->GLK1(2)            --------->TOE2(3)                                    -----              --------->ARR11(3)         <---------TOE1(3)                                    <------              <---------ARR11(3)         <---------TOE2(3)                             <---------RVE1(1)              <---------ARR14(2)        --------->MYB52(1)                            --------->ARR11(3)       <----------DOF2                <---------MYB52(2)                              <---------ARR11(3) ->ANAC58     --------->ARR14(2)<---------TOE2(3)       --------->TOE1(3)      ---------->DOF2<------ ->ANAC58    <---------GLK1(1)--------->MYB52(1)        --------->TOE2(3)  --------->CCA1(2)<-------- ->ANAC46    --------->RVE1(1)---------->DOF2     --------->TOE2(3)   ---------->DOF2 <---------GLK1(2)   aacaaatccctttgaatatctgtctcagtaagtaaaggaaactaacgtttaatctaaaccctaattaacaaaaaaagagatgaaagaagatttttaacta  4296800                                                                                 --------->MYB52(1)                                                                          <------MYB83                                                                          <------MYB46(1)                                                                         --------->MYB46(2)                                                                         --------->MYB52(2)                                                                         --------->MYB59                                                                  ------>ZmHOX2a(2)                                                                 --------->At4g35610                                                                 <---------At4g35610                                                                 <---------GLK1(1)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                                        --------->AtMYB61<---------AtMYB61 --------->ALFIN1                                  <-----------HVH21   <---------MYB52(1) ----->GAMYB                                       <-----------TGA1   <----------DOF2 ------At5g28300                                 <-------TEIL   <---------ARR14(2)       <---------ZAT6 ---->P                             <---------ANAC58    <---------ALFIN1<---------MYB55(1)--------->YAB1 ---->MYB52(1)                      <---------ANAC58   --------->MYB46(3)--------->MYB111(1) -------- ---MYB46(2)        --------->GLK1(2)          <---------ARR14(2)--------->GLK1(1)  ------->GAMYB ---MYB52(2)        <---------ARR14(2)     <---------TOE1(2)    --------->ARR14(2) --------->MYB46(3) ---GT1--------->ICU4           ---------->DOF2--------->ARR14(2)<------ZmHOX2a(2) --------->ANAC46   accgtgggcatgtttaagagcgattccagtggaagaaagcgttcgcagggattcgtcaccaccagggatctgcgttaggttgccaacggcagtgataaag  4296900                ------>NtERF2               --------->DEAR3(1)              --------->At4g35610              <---------At4g35610              <------NtERF2              --------->ATERF1(1)                           --------->MYB52(1)             <---------ATERF1(1)                            ------>MYB83            <---------DEAR3(1)                              ----------->RAV1(1)           <---------At4g35610                              -------->P           <------NtERF2                                   <---------ALFIN1           --------->At4g35610                            <---------MYB55(2)           --------->ATERF1(1)                            --------->MYB46(3)          <---------ATERF1(1)                            --------->DEAR3(2)          ------>NtERF2                                 --------->ARR14(2)          <---------RAP2.3(1)                           <---------TCP15(1)          <---------ERF1                                <---------TCP20         <---------ATERF1(2)                            --------->PCF2   --------->YAB1          ----         <---------DEAR3(1)                           ----------->HVH21  <---------ICU4        <-----         --------->ATERF1(2)                         --------->TOE2(1)  <------ZmHOX2a(2)    <-------       --------->LBD16                               --------->TOE1(1) <---------ARR11(3)    ========       ------>NtERF2                                <---------LBD16    --------->ARR11(3)  ------>NtERF2       <---------ATERF1(1)             ------->GAMYB===========================HOX2a_HOX2a <---------      <---------DEAR3(1)      <----------DOF2       ------>ZmHOX2a(1)  <---------ARR14(2) -----------     <---------LBD16          <---------DAG2--------->GLK1(2)         <------ZmHOX2a(1)   --------->ZAT18    <---------ATERF1(1)   ----------->HVH21<---------ARR14(2) --------->MYB46(3)        --------->At4g35610  <---------ARR14(2)    <---------ANAC58   --------->ARR14(2) <---------MYB55(2)        <---------At4g35610 <------ZmHOX2a(1)<---------ALFIN1    --------->DEAR3(1)<---------ARR14(2)         <---------HSFB2a(2) -->DOF2<------NtERF2   <---------ANAC58   <---------GLK1(2)------>MYB46(1)        --------->HSFB2a(2)   agaggaccccggcggcagcgccactggcctgacttttccaacgccgattctatcctcggacccaccagacgaggatcatgaccatcgggaagcggacagg  4297000                          <---------HSFB2a(2)                          --------->HSFB2a(2)                  ------>MYB46(1)           ----------->RAV1(1)             <---------ICU4                     --------->ANAC58 ----->ALFIN1     ------>MYB83            <---------YAB1                      --------->ANAC58 ----ZAT2 --------->ANAC46<---------HSFC1(1)                                  --------->ANAC46 ----RAV1(2)    --------->AtMYB61         --------->ICU4                   <---------ARR14(2) ======================RAV--------->HSFC1(1) <---------YAB1                --------->ARR14(2) ------- --HVH21<---------HSFB2a(2)         <---------MYB46(3)   ---------->DOF2  ------>ZmHOX2a(1) --------- >HVH21 --------->HSFB2a(2)     --------->ICU4        <---------MYB59   <---------------------WRI1 --   tggtcatgttccacaacaccaacgttttctcgaaatgtttgttcattattcttcgacctaaaagacaccttgaatcctatacgcacagagaagaccaaaa  4297100                                                                            <---------MYB46(3)                                                                            --------->MYB52(2)                                                                            <------MYB46(1)       ---                                                                            <------MYB83         <---                                                                           <---------AtMYB61     ----                                                                          <---------MYB55(1)     <---                                                                          <---------MYB52(1)     <---                                                                          <--------P             ----                                                                         <-------GAMYB           ----                                                      <---------ANAC46  <---------MYB46(3)      <----                                              <-----------RAV1(1)      <---------ANAC46         <----                                             <---------TOE2(3)         <---------ANAC58       <------                                          --------->AHL20(2)           <---------ANAC58       <------                     <------ZmHOX2a(2)    <---------AHL20(2)    --------->ARR11(3)            <------          --------->At5g28300        <-------TEIL<---------ANAC46     <---------LBD16      --------->ARR14(2) --->DOF2--------->YAB1          <---------TOE1(3) --------->ALFIN1<---------ANAC58        <---------ARR14(2) >AtMYB61----------->GT1         <---------------AtSPL8         <---------ARR11(3)        <---------At4g35610 -------->DOF2 <----------DOF2   <---------TOE2(3) <---------ANAC46<---------ANAC58       --------->At4g35610   ggaaagaacgatggtaactttcgatcagtttttttagggttcatataaatgttgtggagggagagagatacttgcggttggtttctatgggccgatgcgc  4297200                   <---------ANAC46                   <---------ANAC55(1)                   <---------ANAC58                   <---------ANAC58                 <---------AHL20(2)              <--------HAHB4              --------->ATHB51        --------->YAB1                                            --------->ANAC46       <---------AHL20(2)                                         --------->ANAC58      --------->AHL20(2)                                     <---------ICU4 ------>ALFIN1<--------ATHB1                                 --------->YAB1 ----PIF5     -------->HAHB4                                --------->ICU4 --->MYC2     <---------ICU4                            --------->LBD16                           <-- ----MYC3     --------->YAB1                           --------->ANAC55(2)                     ------ ----MYC2    --------->ICU4                            <---------ANAC55(2)                     ------ --->MYC3    --------->AHL20(2)                        <---------ANAC58                      -------- --->PIF5  <---------ICU4                              <---------ANAC46                      -------- -----ANAC58 <---------ATHB51                          <---------ANAC58                      -------- -----ANAC58 <---------YAB1                           <---------LBD16      <----------DOF2 <--------- ---ANAC58 --------->YAB1      <----------DOF2    <-----------RAV1(1)      <---------DAG2--------->CCA1(2) ---ANAC46--------->ICU4  --------->GLK1(1)  --------->AHL20(2)   --------->ANAC58      --------->ARR14(2) ---ANAC58<---------YAB1  <---------GLK1(1)  <---------AHL20(2) <-----------GT1     <---------At4g35610   gtggcccatataataataattacttgtgaattcctttaaacccaagtttaatttgttgcgcgattatcaccccatcacttttagtcatcagatttacgcc  4297300 -------ALFIN1                                              <---------ICU4 --->ANAC46                                                --------->ICU4 --->PCF2           --------->ANAC46                       <---------YAB1       <---------DAG2 ->ANAC46 --------->ANAC58                            --------->ANAC46          <----------DOF2 ->ANAC58 --------->ANAC58                            --------->ANAC58    <---------REM1(2) ->ANAC58 --------->ANAC46       <---------At4g35610  --------->ANAC58--------->ZAT6 --GT1  ---------->DOF2      <----------DOF2     <----------DOF2   <---------CCA1(2)    *TSS  <------   ccactatcgaaaacgcaagtctacaaaacttctttagctgttctctcactcctttcaagtcatcatcgtctatctctactcgcttttcgcgcttcccctc  4297400                                                                --------->TOE2(3)                                ------>NtERF2                   --------->TOE1(3)                             --------->LBD16                   <---------HSFB2a(1)                             --------->At4g35610               --------->HSFC1(2)                             ------>NtERF2                     <---------HSFC1(2)                           ------>ZmHOX2a(2)                  ------->TEIL                          <------ZmHOX2a(2)                --------->ANAC58                          --------->ARR14(1)               --------->ANAC46       <----------DOF2    --------->CCA1(2)                --------->ANAC58   ----------->HVH21     --------->AGP1             <---------ARR11(3) --------->ANAC46        <---------ARR14(2)         <---------AHL20(2) <---------O2            --------->ARR14(2)         --------->ARR11(3) --------->ANAC55(2)     <---------GLK1(2)          --------->AHL20(1) --------->O2     <<<<<<<<<TBF1--------->DEAR3(1)   --------->AHL20(2) <---------ANAC55(2)   ----------->ARR10<----------DOF2  <-----------GT1                       ------ ---ALFIN1<---------YAB1<---------At4g35610         <---------AHL20(1)        <-----------GT1 <------   tctacgtgacttttgatttcttcttcagatccgccgagtcttctttttctgaaatatattcacgaaccttcacattcaaattacacttgtctattgatcg  4297500  Previous    Next  AGI:  At3g13280.1    Description:  similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G01355.1); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 4295334    to: 4297007    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13290.1    Description:  VCR (VARICOSE-RELATED); nucleotide binding. similar to VCS (VARICOSE), nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G13300.1); similar to VCS (VARICOSE), nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G13300.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45214.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70211.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 4297388    to: 4303515    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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