Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->At4g35610                                                                 <------ZmHOX2a(2)                                                                 --------->CCA1(2)                                                                --------->ARR14(2)                                                                <---------AGP1                                                                <---------ARR14(2)                                                                --------->AGP1             --------->AHL20(2)                                 <---------ARR11(3)             <---------AHL20(2)                                 --------->ARR11(3)           <----------DOF2                                     --------->GLK1(1)          --------->ANAC58  <---------At4g35610                                     ---------->DOF2                 --------->ANAC58  --------->At4g35610                           <---------AHL20(2)              --------->TOE1(3) ------GLK1(1)                                  --------->AHL20(2)------>ZmHOX2a(2)<---------ALFIN1 ----->GLK1(1)                                --------->YAB1   <---------GLK1(1)--------->TOE2(3) <--   tttcagcagaagtctttaatttctcagtagcaagagacacaattccaaatataaatagacaaaagagatctgaaaactcttacctcaacctcgagcaagg  4274100                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                       --------->At4g35610                                       ----                                   <---------ARR14(2)                                       ---------                   ========================HOX2a_HOX2a                                     --------->ANAC58               ------>MYB46(1)     --------->ARR14(2)                           --------->DAG2 ------               ------>MYB83     <---------TOE2(3)                              ---------->DOF2 ------               --------->MYB52(1) <------ZmHOX2a(1)                     <---------ICU4     --------->ANAC58 <-----------GT1   <------ZmHOX2a(1)<------ZmHOX2a(2)                  --------->ICU4 <---------ZAT6 --------DOF2  -------->P  --------->ZAT6                         ----------->GT1   ----------->GT1   ctttaacattctcaacctacaggaatatagcactaaggatcagcaaaatcgaaactttcgaaaacgtcgagtaataagtgctaaagtagtgaaacccaag  4274200                                                                          ---------->DOF2 ---->TEIL                                                            --------->LBD16             --- ------GLK1(2)                                                       <---------LBD16              <-- ------ARR11(3)                                                     <---------ANAC46              --- ------ARR14(2)        <-------TEIL                                <---------LBD16           -------- ----->ARR14(2)     --------->ANAC58                        <---------TOE1(3)                ------>ZmHOX2a(1) >TOE1(2) --------->AHL20(2)                         ---------->DOF2<---------LBD16        --------->At4g35610 --->ANAC58         --------->ANAC58      --------->LBD16   <---------TOE2(3)              ---------- --->ANAC58    <----------ID1<---------YAB1         <------ZmHOX2a(1)--------->LBD16       <---------At4g35610   aacctccatcgattaattcgacaagtacattgtgattaagaacccgaagaaacaggaaagttagggttttccggggaaaagaaacttacagtctcctgag  4274300                                    ----------->HVH21                               <---------GLK1(1)                                    <---------YAB1                                  --------->GLK1(1)                                 --------->WRKY18(1)                                --------->ATERF1(1)                                <-----------HVH21                              <---------ANAC46 <----                           <---------ATERF1(2)                                <---------LBD16   <----                           <---------DEAR3(1)                            <------MYB46(1)     -------- ------>ARR14(2)           --------->DEAR3(1)                            <------MYB83       <-------- -------ARR14(2)          <---------LBD16     ------>ZmHOX2a(2) --------->WRKY38(1)<---------ATERF1(1) ------>GLK1(2) --------->ATHB12<---------RAP2.6(3)             --------->ETT(2)--------->LBD16 <---- ->LBD16       <---------YAB1  <---------MYB46(3)    --------------------->WRI1<---------LBD16  <---- ->RAV1(2)     --------->ICU4 <---------DEAR3(1)------>ZmHOX2a(1)     <---------MYB52(1) ------>ZmHOX2a(1)   aatcgacatcgagagtgatgatttgttcaccggcggtcatgacagtgatcctcatcttcgtaatcgtcgactgtttggtttccggggtctcctctgtgac  4274400      <<<<<<<<<<WRKY43      <<<<<<<<<<WRKY26      <<<<<<<<<<WRKY38                                                                            --- -----ANAC58            --------->GLK1(2)                     *TSS          <---------ANAC46      --- -----ANAC46           <---------GLK1(2)        <----------DOF2       --------->ZAT6   --------->ANAC58 --->HVH21       --------->WOX13(1)            <---------ANAC58 <---------YAB1         --------->ANAC58 ---HVH21  --------->AHL20(2)          ------>ZmHOX2a(1)<---------TOE1(3)   <---------ANAC58   <----- -------------AGL1  --------->YAB1    --------->TOE2(3)<-----------RAV1(2)  <---------ANAC58  ------- -----ANAC58<---------AHL20(2)<-----------HVH21<---------ANAC58<---------TOE2(3)     ---------->DOF2   ttgttttggtcaattttataaatcagaatctctgtgacttccttagatggctttacttcaggttttatgttaactctggcttataagaaaagccaaacca  4274500                                                             <---------LBD16          <----------DOF2                                   <-----------------AGL1          <--------         <----------DOF2                                    =========================================         <---------DAG2            <------------CBF         <-----------------AG            <--------       --------->LBD16         --------->DREB2C(2)        -------->P                    ----------->RAV1(2)       ------>NtERF2   <---------HSFC1(2)               <---------MYB111(1)          -------->P      --------->ANAC58 --------->HSFC1(2)               <---------MYB52(2)         <---------MYB52(2)      --------->ANAC58 --------->At4g35610             --------->HSFC1(2)         --------->HSFC1(2)      --------->ANAC46 --------->HSFB2a(1)            <-----------ARR10          <-----------ARR10 ---------->DOF2       <---------HSFB2a(1)          --------->LBD16            --------->LBD16      < ------>TOE2(3)      <---------GLK1(2)             --------->LBD16            --------->ANAC46      - ------>TOE1(3)   <-----------RAV1(2)              --------->ANAC46           --------->LBD16------->TEIL ----ALFIN1       <---------HSFB2a(2)          --------->ARR14(2)   <---------MYB46(3)  <---------LBD16 -->MYB46(3)      --------->HSFB2a(2)          <---------ARR14(2)   ----------->GT1<---------MYB111(1)   ccttaaacccgcctttcgacccagaagcttccaccgatattggtcttcaaatcccgaaactaccccgtattggttaaatcccgaaactacccctgaatct  4274600                             <---------------AtSPL3                                        <------MYB83                 --------------->AGL15                                                     <------MYB46(1)                ----------------->AGL1                                                 <-----------RAV1(1)                ----------------->AG                                                   --------->MYB111(2)              --------->ARR14(2)              ------->TEIL                             --------->MYB52(2)        ------>NtERF2        --------------->AtSPL8                           --------->TOE2(3)       <---------ETT(1)      <---------------AtSPL8                           --------->TOE1(3)     < -CCA1(2)     <---------ARR14(2)   <---------DAG2                             <---------DAG2      --- =================================MADS_MADS<---------ATHB12          --------->At5g28300<-------GAMYB -GLK1(2)    <---------MYB52(1) <-----------GT1 --------->TOE2(3)   ----------->GT1    --------->MYB55(2) ---------AHL20(2)        <---------AHL20(2)  -------->P           --------->ZAT6      <---------MYB46(3) -------->AHL20(2)------>ZmHOX2a(1)<----------DOF2          <----------DOF2<-----------GT1 <---------MYB46(3)   ttttaaatcccgaccgtttcctcataagttaattgtactttactaatcaacctttgttttgacttttgaacagtaattaaccttattgtttgttggttct  4274700                              <----------DOF2                --------->ARR11(3)                          <---------WRKY38(1)                <---------ARR11(3)                          <---------WRKY12    --------->CCA1(2)      <-----------GT1                 --------->WRKY18(1)   --------->ARR11(3)  <----------DOF2                  --------->DAG2  <------ZmHOX2a(1)    <---------DAG2                 ---------->DOF2    ------->TEIL ---------TOE2(3)   <-----------GT1            ----------->GT1        <---------YAB1                - ------->DOF2 <---------TOE2(3)              <---------ATHB12     <-----------HVH21 --------->TOE2(3)   taaaggatatagacttaagatttaactttatactttagtttaaacaaatcagtataaaaaggtcaatgtgtcatgaatcaattgaacatcaattcttatg  4274800                       ------->GAMYB                       --------->TOE1(2)                      --------->MYB46(3)                    --------->MYB52(1) <---------DAG2                   --------->ICU4      <----------DOF2             --------->DAG2           <---------DAG2                        <----------DOF2            ---------->DOF2        <-----------GT1                       <---------AHL20(2)         ----------->GT1--------->MYB52(1)                               <-----------GT1    <--------    <------ZmHOX2a(1) <---------MYB52(2)                           <---------ANAC58         --------- -------->ICU4   --------->YAB1<-----------ARR10                   <---------ANAC58  <---------------   tcattaggaagaggtaaagtcataacgaacgagaatattacctttttcatatagatagataagaatatagcttattttctttttagtatcgcttatggaa  4274900                                                              <---------AGP1                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                              --------->ARR14(2)                                                              <---------ARR14(2)                                                              <-----------ARR10                                                              <---------ARR11(1)                                                              --------->GLK1(2)                                                     --------->ZAT14                                                     <---------ZAT14                                                <---------LBD16                                                --------->LBD16 ------>ZmHOX2a(2)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                              <---------LBD16<---------CCA1(2)                                              ------->GAMYB  <---------ARR14(1)                                           <-----------GT1  --------->LBD16                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxx>smallRNA(i)    <---------AHL20(2)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <-                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <-                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------AHL20(2)          --                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  <-------                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <------- -HSFB2a(2)            <-----------GT1<---------GLK1(2)   <---------LBD16   <---------AHL20(2)     -- >HSFB2a(2)         <---------AHL20(2)<---------ARR11(3)  --------->LBD16 <---------YAB1  <---------ICU4 --AGL1      --------->MYB59    <-----------GT1--------->ANAC46<------ZmHOX2a(2)<---------ZAT6  <----   attttctaatggaattaggcatttttttctattgttactagattttaacccgcggtataccgcggatctattttttattttagtgttgaaactaattact  4275000  Previous    Next  AGI:  At3g13235.1    Description:  ubiquitin family protein. similar to DDI1 [synthetic construct] (GB:ABG89121.1); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); contains InterPro domain Peptidase A2A, retrovirus, catalytic; (InterPro:IPR001995); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449) Range:  from: 4271265    to: 4274462    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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