Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <---------At4g35610                                           <------                                ----------->RAV1(2)                                          <------MYB46(1)                          <---------WOX13(1)                                                 <-------                         >>>>>>>>>ARR2                                                       --------                    <XXXXXXXXXXXXXXXXXXXXMIR827<---------GLK1(1)                             <------MYB83               <-----------RAV1(2)            --------->ARR11(3)                            ---------              <------NtERF2     --------->At4g35610                                         <--------       <---------ANAC58 --------->ATHB12      <---------ARR11(3)                 --------->TOE2(3)       <---------ANAC58<---------YAB1   --------->CCA1(2)                        --------->TOE1(3)  <   aacccacaggcttggcctcaggtttttgattgtcatctggagatttaagaactctgaattgttctcaagagaaaatttgatgaccttaatttgtttggtg  4269600                                                                                                  <--                                                                                                  <--                                                                    --------->ARR14(2)            *TSS                                                                    <---------ARR14(2)         <-----       <---------TOE2(3)                                            --------->ARR11(3)      <-------- ---------------WRI1                                   <---------ANAC58                  --------->ATHB51 --ANAC46                                              <---------ANAC58                  <---------ICU4 --->GT1                                               <---------ANAC46  <---------ICU4 <---------YAB1 >MYB46(2)                                          <---------WOX13(1)------>ZmHOX2a(2) --------->ICU4 -MYB46(3)                                  <---------TOE2(3)       <---------ARR11(3)  <---------ATHB51 ---------MYB52(2)--------->HSFB2a(1)     --------------->AGL15    <---------CCA1(2)    <---------ATHB12   aaacgaactaatgaaaccgaaggtttttgtttgtttgtgatttactaagaatagattgcttctaagtttggatcttcatgactcagacccataattgtga  4269700                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(2)                                      <---------AHL20(2)                    <---------ICU4                                     <---------AHL20(2)                     --------->YAB1                                     --------->AHL20(1)                     ----------->GT1                              <------MYB46(1)                          ------------>CBF     ------>MYB83             ----------->GT1    ------------>CBF  <---------ARR11(3)     ------>MYB46(1)          <------MYB83      --------->ANAC58   --------->ARR11(3)   <---------MYB59        --------->ZAT2        --------->ANAC58   --------->ARR14(2)  --------->ANAC55(2) --------->YAB1<---------AHL20(2)            --------->RVE1(1) -------MYB59        <---------ATHB12<---------AHL20(1)           --------->CCA1(1) -------DAG2       --------->WOX13(1)--------->AHL20(2)         --------->YAB1   <---------ANAC55(1) ------GT1       ------------>CBF   --------->AHL20(2)          --------->AHL20(2) -ICU4  <----------DOF2   <---------ZAT2       ------->GAMYB --------->YAB1<---------ATHB12    <-----   ccttacctatctttagtagcccaatcagagcttggtaaattaatttcaacgagcaatgtagaagaataatatcttcaatcgttacatgttgttatgtctt  4269800                                                                                                   --                                                         ---------->DOF2                          ---                                                 ------>MYB46(1)                                 <---                                               <---------MYB59                                   <---       <---------AHL20(2)         <---------TOE2(3)<---------ATHB12                         ---------       --------->AHL20(2)         --------->MYB59------>MYB83<----------ID1               <----------DOF2 -----DOF2                ----------->GT1     --------->ANAC55(2)               <----------DOF2 <----   tttcattttttaatttcggtttacatagttgtaaataaggtcatacatacctaatgaataaaagggccaaagtttgacaaaacttttatgggctttataa  4269900            <---------AHL20(2)     ----------->GT1  <------------CBF                             --------->LBD16                       *TSS ---------->CBF                               <---------RAP2.6(2)               --------->YAB1 ------>ANAC46                      <---------ANAC58                         --------->TOE1(3) --------------AG      ----------->GT1       <---------LBD16         --------->TOE1(3) --------------AGL1  <------------CBF    <---------------AtSPL3      --------->TOE2(3) -->TBP     ----------->TBP         <---------ANAC58                --------->At4g35610 -------GT1 --------->AHL20(2)      <---------ANAC46     >>>>>>>>>GATA-1     --------->TOE2(3)     --   acccaattggtaatataaatagagattgtgaaacgatgtcgtttttgtccggctacatagataaaccctaagcttaaaaccttcataaaacaaaaaacat  4270000                                         ------>NtERF2                                         --------->LBD16                                        --------->ANAC58                                        --------->ANAC58                                        --------->ANAC46                                      --------->SPL7                                    <---------SPL7 ------>ZmHOX2a(2)                                    <-----------HVH21                                    ------>NtERF2 <------ZmHOX2a(2)                                    <---------RAP2.6(3)                                   --------->RAP2.6(2)            <---------TOE2(3)                                   --------->DEAR3(1)             --------->MYB59                                   --------->RAP2.3(2)         --------->CCA1(2)                                  --------->ORA47(2)          <---------ARR11(3)                                  --------->RAP2.3(1)    --------->YAB1                     --------------------->WRI1  <---------ARR14(2)            <---------ALFIN1      --------->ATERF1(1)   <---------ATHB12        <---------At4g35610      ------>NtERF2   --------->ARR14(2)                               <--        --------->At4g35610    <---------LBD16  <---------At4g35610                      <---------AHL20(1)     <---------At4g35610<---------MYB46(3)  <-----------HVH21 --------->ARR11(3)      --------->AHL20(2)  --------->LBD16  ------>ZmHOX2a(1)--------->ABI4(1) --------->WOX13(1)             <---------ATHB12 ---->ZmHOX2a(1)------>ZmHOX2a(1)--------->LBD16--------->At4g35610--------->ANAC55(2)--------->YAB1   cctccgaagcagctactcctcctcagttgttgttccgccgtcccgccatcagatcccaatcaaagatttaggtattctccaatttcaataatatgttttg  4270100                                                                  --------->AHL20(2)                                                           <---------TOE2(2) <---------ARR11(3)                                <---------GLK1(1)          <---------TOE1(2) --------->ARR11(3)   --------->LBD16  <---------GLK1(1)                     <-------GAMYB     <---------CCA1(2) -------GLK1(1)  ------>ZmHOX2a(2)           --------->At4g35610  <---------AHL20(2) <-----------GT1<   aattccccaaaatttttgatcgatttctctcttgaaatctctctacgagctcaattagtcggatgtttttaatttcatatatctgtgtaacgattcgagt  4270200             <---------ANAC46                                                                ------>ZmHOX2a(2)         <---------ANAC58                                                                  --------->ARR11(3)         <-------GAMYB                                    <---------At4g35610              --------->AGP1         <---------ANAC58                                 --------->At4g35610         <-----------ARR10        <------MYB46(1)                               <---------REM1(1)               --------->ARR14(2)        <------MYB83       <-----------GT1        --------------->AGL15               <---------ARR14(2) <<<<<<<<<GATA-1         <----------DOF2    --------->At4g35610              <---------TOE1(3)    <-- -----------GT1   --------->KAN4(2)         <---------At4g35610              <---------TOE2(3)    <--   tttatctatttggttgtgtttattcttctttacaatttttatcttcagattactagttgtagctcaattactagtatttaaggtatcaaatctgatctag  4270300                   --------->ATHB12                 <---------WOX13(1)               --------->ATHB12                                                                   <--           --------->GLK1(2)                                                                     <---           --------->ARR14(2)                                                                    <---           <---------ARR14(2)    --------->ATHB12                                                <--- --------DOF2 <---------AHL20(2)<-------TEIL                                              --------->ANAC55(2) -------DAG2  <---------YAB1<---------ATHB12     ------->TEIL    ----------->GT1       <---------AHL20(2)   ctttatctgtgcgaatttgattgatagccagtgattcattagaaactcatgaatttcagatttaagagtgtaattcatactttggataatttatgtattg  4270400         --------->ATHB51         <---------AHL20(2)                                                                      ----         --------->AHL20(2)                                                                      ----         <--------ATHB1                                                                        ------         <---------ICU4                                                                        ------        <---------ATHB51                   <---------At4g35610                                 ------        --------->ICU4                     --------->At4g35610                               --------   <------MYB46(1)                       ================================RAV                ---------   <------MYB83                          <-----------RAV1(2)                          <------NtERF2   ----------->GT1                    <---------REM1(2)                              ------>NtERF2 <--------P                         <---------ZAT18                                 --------->RAP2.6(2) --------DOF2   --------->TOE2(3)   <---------ZAT14                                 --------->ATERF1(2) ------ANAC58  <---------YAB1       --------->ZAT14             ------->GAMYB       <---------ATERF1(2) ------ANAC46 <---------At5g28300   --------->ZAT18          ----------->RAV1(1)    --------->DEAR3(1) ------ANAC58<-----------GT1    <------NtERF2              --------->At4g35610     <---------RAP2.6(2)   cttgtaggtaataatttaccatagaagaaatggcagagtctactcagatggaagttgagacagcaacagaaggaactgtgccattgccgcctaaaccaac  4270500  Previous    Next  AGI:  At3g13229.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12690.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45189.1); contains InterPro domain Protein of unknown function DUF868, plant (InterPro:IPR008586) Range:  from: 4268451    to: 4269698    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13230.1    Description:  RNA binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO67996.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 4269985    to: 4271211    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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