Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -------->ANAC58 -------->ANAC46 ---------->HVH21 -------->ANAC58 ------->SPL7 ------SPL7                                           <---------ATHB12 ----->TOE1(2)                                      --------->WOX13(1) ---->ANAC58                                   xxxxxxxxxxxxxxxx>smallRNA(fl3) ---->ANAC46                                <---------ARR11(3)      --------->YAB1                 -- ---->ANAC58                                --------->ARR11(3)      --------->TOE2(3)            <--- ---->TGA1a                         <---------ANAC55(2)  <---------YAB1                          ---- --------->AtSPL3            <---------ANAC55(2)  --------->MYB46(3)--------->TOE1(3)           ----- ->HVH21   ---------->DOF2   --------->ANAC55(2) --------->ANAC46 --------->GLK1(2)            ------ -HVH21 --------->AHL20(2)  <-------TEIL---------->DOF2--------->YAB1         --------->ATHB12 <-----   gtacgacacattaaaaagagttgacaaaaatacataatacataaaaggtctacccaatcatagttgataatcttaattagtgattaaaacgaaggtgtaa  4257600                                                   --------->ZAT14                                                   <---------ZAT14                                                   ---------->DOF2         <---------ARR11(3)                     ----------->GT1       <---------YAB1                           <---------ZAT6     <---------ICU4                  ------>ZmHOX2a(2)     --------->YAB1                 <------ZmHOX2a(2)    --------->ICU4                 <---------ARR14(2) --------->GT1                     <-----------ARR10--------->DAG2 ------ANAC46               ---------->DOF2   --------->ZAT14   ------->TEIL ------->GT1             <----------DOF2  --------->ZAT6       --------->MYB52(1) ---->DAG2       --------->TOE2(3) --------->ARR14(2)        <---------MYB52(2)                     < ---->DOF2  --------->AHL20(2)     <---------ARR11(3)----------->GT1                 <---------GLK1(2) ----ZAT14  <---------AHL20(2)     --------->ARR11(3)<---------ANAC46       <-----------GT1         -   agtgtaaacatgattttaatctcaatgctttaaggccgatcttagcagtagagtaaagtgtaaacgaacgtattgtttttacacctagaattttaagttc  4257700                                                                   <---------DEAR3(2)                                                               <------MYB83                                                               <------MYB46(1)                                                          <---------YAB1                            <                                                     <---------AHL20(2)                            <-                                                    <---------AHL20(1)                      <--------                                                    <---------ARR11(3)                   <---------WOX13(1)                                                   <---------CCA1(2)      <---------CCA1(2)<---------            <-----------------AGL3          --------->ARR11(3)<---------AtMYB61       <---------AHL20(2) ---------GLK1(1)       --------->AtLEC2    <---------ARR11(3)--------->MYB59         --------->AHL20(2) -------->GLK1(1)       ----------->GT1    <---------GLK1(2)  <---------MYB46(3)     --------->AHL20(2)   tgaaatccattctatctatttttgaaatgcaaaaacgattttccaaaatctccatatattttgtttggtcgattccaaatctctctatttaattgacgat  4257800                                    --------->ANAC58                                 <---------ARR14(2)                                 --------->ARR14(2)                                <---------ICU4                          --------->GLK1(1)                                       <---------YAB1                          <----------TaMYB80                                      --------->ICU4                         --------->ARR14(2)                                  --------->ANAC55(2)                         <---------ARR14(2)                      <---------------AGL15                      --------->TOE2(1)                          --------------->AGL15     ---------->DOF2  --------->TOE1(1)    ---------->DOF2      <-----------------AGL3 ---------At5g28300  <---------LBD16--------->ANAC58          <-----------GT1<---------ANAC55(2) ----------GT1      --------->TOE2(2)  ---------->DOF2 ----------->GT1      <-------TEIL -TOE2(3)           --------->TOE1(2)--------->LBD16---------->DOF2        --------->CCA1(2)        < --GT1       <----------ID1   --------->YAB1   <------ZmHOX2a(1)----------------->AGL3   --------->TOE2(3)   tttactgcaaagaaaacgacaacctcggatattcagaaccgcaaagaaaggacacaaaggaaaatcactatttttagatacataatgtttacattaactt  4257900                --------->ARR11(3)        --------->ZAT6                                                           --------->DAG2      <-----------GT1      <----------DOF2                                     ---------->DOF2   --------->YAB1  <----------DOF2      ------------>CBF           <-----------GT1 ----------DOF2 <---------ARR11(3)     <-----------GT1 <---------AHL20(2) ----------->GT1---------->DOF2   ctcttttataactctacaaatctttttttctttcaccagtttcacaattccgactattttttagagttttctctattcgtaaaaaggtagagaaagaaac  4258000                                                                             ==================HOX2a_HOX2a                                                                            <---------ARR11(3)                                                                  --------->YAB1                                                               <------ZmHOX2a(1)                                                            ========================HOX2a_HOX2a                                                      ---------->DOF2       --------->ARR11(3)                  ----------->GT1                  --------->ANAC58 <---------YAB1                ---------->DOF2                    --------->ANAC58 --------->ICU4      <------ZmHOX2a(1)             *TSS <----------ID1              <------ZmHOX2a(1)=====================HOX2a_HOX2a           ----------->GT1              ---------->DOF2     <------ZmHOX2a(1)<------ZmHOX2a(2)   ----   acagaagaaggggaaggaaaaagaaaaaacacaaatggaagggaaagaggaagaagcaaagaggaggatgatgatgaagatcaaacttaaggagacagaa  4258100                                                                                   <---------ANAC58                                                                                   <---------ANAC46                                                                                 --------->MYB55(2)                                                                                 ------>NtERF2                                                                                --------->ALFIN1                                                                                <---------DEAR3(1)                                                                               --------->ATERF1(1)                                                                               <-------GAMYB                                                                               <------NtERF2                                                                              <---------ATERF1(1)                                                                              <---------MYB46(3)                                                                             <---------ANAC58                                                                             <---------ANAC46                                                                             <---------DEAR3(1)                                                                             <---------DREB2C(2)                                                                             <---------RAP2.6(2)                                                                             <---------DEAR4(1)                                                                             <---------ANAC58                                                                            <---------ABI4(1)                                                                            <------NtERF2                                                                           <---------ERF1                                                                          --------->ALFIN1                                                                          <---------DEAR3(1)                                                                         --------->ATERF1(1)                                                                        <---------MYB46(3)<------MYB46(1)              --------->ANAC46                                         --------->ALFIN1   <------MYB83              --------->ANAC58                                         <---------DEAR3(1)--------->MYB46(2)              --------->ANAC58                                       <---------MYB46(3)  --------->MYB111(1)      --------->ANAC58                                            xxxxxxxxxxxxxxxx>smallRNA(i)      --------->ANAC58                                        --------->ALFIN1<---------RAP2.3(1)     --------->SPL7                                         <---------ANAC46--------->ATERF1(1)  --------->ANAC46                                      ------->TEIL<---------DEAR3(1)   --------->MYB59  --------->ANAC58                                      --------->SPL7 <---------AtMYB61 --------->MYB111(2)  --------->TGA1a                <---------HSFC1(2)     <-------TEIL<---------AtMYB61   <---------MYB55(1)  --------->ANAC58               --------->HSFC1(2) <-------MYC3  <---------MYB46(3)    <--------P  ===============================bZIP_DOF          --------->ANAC46 --------->ALFIN1   <---------MYB52(1)  <---------TGA1a                --------->At4g35610------->MYC3 <---------AtMYB61<------NtERF2  --------->ANAC55(1)   <----------ID1           <---------ALFIN1<---------DEAR3(1)<---------ANAC58 - ----->At4g35610      ---------->DOF2           <---------REM1(2)--------->ALFIN1<---------MYB46(3) -   gcagacgtaagccaagacgacattaaaagacaagaagcttacaacatgtctccacgcgtacgtcgtggtggtggtggtggcggtggctcggtaggtatga  4258200                                                                       <---------ALFIN1                                                                   --------->DOF5.7(2)                                                                   <---------MYB52(1)                                                                  <-------GAMYB                                                                  ===================================                                            --------->ANAC46     <---------ANAC58                                            <---------ALFIN1     <---------ANAC58                                          <---------ALFIN1      <------NtERF2                                         --------->ZAT14      --------->ALFIN1                                      ------>MYB46(1)       <---------At4g35610               ----------->GT1        ------>MYB83          --------->At4g35610            --------->ALFIN1        --------->MYB46(3)    <-----------RAV1(2)          <---------ANAC58          <---------MYB111(1) <-----------HVH21          <---------ANAC58      <---------ZAT18         ------>ZmHOX2a(1) --------->DEAR3(1) -------->ANAC58                --------->ZAT18   <---------ATERF1(1) --------->MYB46(3)   <---------LBD16 -------->ANAC58               --------->ANAC46----------->RAV1(2)<---------RAP2.6(3) --------->ZAT14   gcaagtcatcgagcgtgaggcaaaactgtttatgcgcaccaactacacaccctggctccttcaggtgccgttaccaccgtcgtaacgctggactcgggat  4258300                                                                                   <---------ANAC55(2)                                                                                   --------->ANAC55(2)         --------->ARR14(2)               <---------ANAC46                      <---------AHL20(2)         <---------ARR14(2)             <------MYB83                         --------->AHL20(1) --------->TGA1a                        <------MYB46(1)                      <---------AHL20(1) <---------O2                          <---------MYB46(3)                  --------->AHL20(1) <---------TGA1a                      <---------ANAC46                     <---------AHL20(1) <---------ANAC46                     <---------ANAC58                  --------->AHL20(2) <---------bZIP60(2)                  <---------ANAC58                <---------WOX13(1) <---------ANAC58                   --------->MYB55(2)                <---------YAB1 --------->O2 <---------MYB52(1)    <---------MYB46(3)              --------->ATHB12 <---------ANAC58               <-----------RAV1(1)                --------->ICU4  <---------ANAC55(1) ==========MYC_MYB       <---------DAG2--------->MYB55(2)          <---------YAB1  <---------ANAC46   gtctcgtggcacatccgttccctctaacctttccatgttggctggtggagactctaattctcccaagtgatgattaatatatattatgtgtttcttctca  4258400                                                                  <-----------GT1                                                             <---------ARR14(2)                                                             --------->ARR14(2)             <--------                                                             <---------ARR11(3)             ---------                                                         <---------LBD16                    <--------               <---------TOE1(2)                    <---------GLK1(1)                       ---------   <---------AHL20(2)                           <---------HSFB2a(2)                        --------->AHL20(2)  --------->AHL20(2)                   <-------TEIL --------->GLK1(1)<----------DOF2   --------->AHL20(2)   tcaatttaaaattctcgtatgtgtctgtgtatatacaaaaatgcataagtcgagaaatctctggatattcactttgctgtttgcacaaatgaaataaatt  4258500  Previous    Next  AGI:  At3g13227.1    Description:  serine-rich protein-related. similar to serine-rich protein-related [Arabidopsis thaliana] (TAIR:AT5G55980.1) Range:  from: 4258013    to: 4258512    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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