Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->TOE2(3)                                             --------->GLK1(2)   --------->GLK1(2) --------->GLK1(2)                           --------->TOE2(3)   <---------GLK1(2)   <---------GLK1(2) ---------GLK1(2)  --------->LBD16    --------->YAB1        --------->TOE1(2)        --------->ARR14(2) ----->DOF2    --------->KAN4(2)   --------->WOX13(1)       --------->TOE2(2)        <---------ARR14(2) >GT1------>ZmHOX2a(1)         <-----------GT1    --------->AHL20(2)     --------->YAB1   aagattccttatttgaacatccccagacatattataccaattagaaatctaaataaacaaaacataagattctaagcataacacacagattctaagacaa  4253900                                                                          ---------->DOF2                                                                     ----------->RAV1(1)--------->ZAT6                                                           --------->ANAC46     ----------->GT1                        ----------->GT1                    --------->ANAC58     ---------------------                   --------->AHL20(2)                      --------->ANAC58--------->DAG2               --------->ZAT18                   <------ZmHOX2a(1)   ================================          ---------->DOF2                     <---------STY1(1)      --------------->AGL15      <----------ID1<---------AHL20(2)       --------->TOE1(2)      <----------ID1    ---------------   gaccaaaatcgacaaagggcattaaatagcaaaatccaaaacaaaaccctaggagaagcacacgctcaatacaacaaaaaggaagtaaaaacactaaaac  4254000                                                                                                   --                                                                                                   --                                                                                                  <--                                                                                                  ---                                            <---------HSFB2a(1)                                  ----                                            --------->HSFB2a(1)                                  <---                                            --------->HSFC1(2)                                   ----                                            <---------HSFC1(2)                                   <---                                 <---------------AGL15                            ------>ZmHOX2a(1)<-                                --------->TOE2(3)                                --------->TOE2(3)--- --->ANAC81    <----------DOF2  <---------MYB59--------->At4g35610          <---------ALFIN1   ------ ================================================MADS_MADS         ======================HOX2a_HOX2a --------->ANAC81               --------->TOE1(3)<---------YAB1    <------ZmHOX2a(2)---------->DOF2<-   aaaaacaaatgctgaagctttctcagtaaaacaacctaaatagagaagcttctgagtggtctcatgtggatcactgaaacactccttaaagacagagaag  4254100                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                           --------->DEAR3(1)                                                                                         <---------ATERF1(1)                                                                                        --------->DEAR3(1)                                                                                       <------NtERF2                                                                                      ------>NtERF2<-                                                                                      <---------RAP2.6(3)                                                                                     --------->ANAC58                                                                                     --------->RRTF1(2)                                                                                     --------->DEAR3(1)                                                                                     >>>>>>>>>AtERF-4                                                                                     >>>>>>>>>AtERF-3                                                                                     >>>>>>>>>AtERF-2                                                                                     --------->ANAC58                                                                                     >>>>>>>>>AtERF-1                                                                                     >>>>>>>>>AtERF-5                                                                                     >>>>>>>>>AtERF-7                                                                                     --------->RAP2.3(2)   ------>ZmHOX2a(1)                                                                 --------->RAP2.6(2) ------->ARR14(2)                                                                    --------->RAP2.3(3) ------->ARR11(3)                                                  <------NtERF2     --------->DREB2C(2) -------GLK1(1)                                                   --------->LBD16    --------->RRTF1(3) ------>GLK1(1)                                                   <---------RAP2.6(3)--------->ANAC46 ----->ARR14(2)                                                  --------->RAP2.6(2) --------->ATERF1(2) ------ARR14(2)                                                 <---------LBD16     --------->ATERF1(1) ----->ARR11(3)                                                --------->At4g35610  --------->RRTF1(1) ------ARR11(3)                                            --------->ARR14(2)       --------->ERF1 -- --------ARR14(2)                                          <---------ARR14(2)       --------->RAP2.3(1) ------>RVE1(1)         <---------MYB52(1)             <---------At4g35610         <---------At4g35610 ----->ARR10           --------->ANAC46     <---------AtLEC2<------ZmHOX2a(2)   ---------->DOF2------ --------ARR11(3)    <---------LBD16      <---------YAB1  --------->At4g35610  <---------STY1(1) ----   atatcctcgtcggaatgttgtttaccggtaacctctctgatgttttgaatggtttgaagcagatcagccggaatagaaaccctagagccgccatcgccgc  4254200             --------->MYB52(2)             <------MYB83             <------MYB46(1)           <--------P    <---------At4g35610   ------>ZmHOX2a(1) ------>ZmHOX2a(2) ----At4g35610                                                                                    <-- --->At4g35610                                                                                    --- -->DEAR3(1) <---------MYB46(3)                      <------ZmHOX2a(1)                        ------- --------ARR14(2)                          <------ZmHOX2a(1)                         <---------------AtSPL8 ------->ARR14(2)        ---------->DOF2 --------->ALFIN1                            --------------->AtSPL8 >NtERF2 <-----------RAV1(1)     --------->At4g35610----------->GT1       *TSS <---------ANAC46  <--- ------->HVH21<-------GAMYB   ---------->DOF2 <------ZmHOX2a(1)        ---------->DOF2       <-------   tgatcctgctcatgttggttacagagagaaagagaagcggagggaggaggagagaggaaatatgggttgaacataaagacttcgtatatagtactattat  4254300                                                      <-----------HVH21                                                      <-----------TGA1                                                     --------->TGA2(1)                                                     <---------bZIP60(1)                                                     <---------TGA2(1)                                                     <---------bZIP60(2)                                                     --------->bZIP60(2)                                                     --------->bZIP60(1)                                                     <---------TGA1a                                                     <---------O2                                                     --------->ANAC58              =================================================MYC_MYB              -------->P                             --------->O2              <---------At5g28300                    --------->TGA1a       >>>>>>>>>SPL1                                 --------->ANAC55(2)       ------------>CBF                              --------->ANAC46       >>>>>>>>>SPL5                                 --------->ANAC58       >>>>>>>>>SPL4                                ----------->STF1                      <----------     --------->LBD16                                <-----------STF1                      -----------    <---------ANAC58                               <---------TGA2(2)                    <---------WOX13(1)    <---------ANAC46                              --------->WRKY12                    --------->ATHB12    <---------ANAC58                              ----------->HVH21                  <---------AHL20(2)   --------------->AtSPL3                       --------->At4g35610              --------->ATHB51   --------------->AtSPL8                       <---------At4g35610              <---------ICU4 <-----------GT1                               --------->ANAC46                 <---------YAB1 -------AHL20(2)                           <---------AHL20(2)                 <---------ICU4 ------>AHL20(2)   ============================================bZIP_DOF      ------>ZmHOX2a(1) -->AHL20(2) <-----------GT1             <-----------TBP         ------------>CBF--------->ATHB12 ------AHL20(2)    <----------DOF2    ------->TEIL----------->TGA1        ------>ZmHOX2a(1)        -- --YAB1--------->SPL7              <---------ANAC46------>NtERF2<-----------GT1 --------->ICU4    <--   ttatttccgtacaatctaccgcttaatgtctctctctacgtatatttatacgctgacgtcactgtttatcaatttcctcctcattatttgattgagtact  4254400                                                           <-----------HVH21                                                           <-----------TGA1                                                          --------->bZIP60(1)                                                          <---------bZIP60(1)                                                          --------->TGA2(1)                                                          <---------TGA2(1)                                                          <---------O2                                                          <---------TGA1a                                                          --------->TGA1a                                                          <---------bZIP60(2)                                                          --------->bZIP60(2)                                                          --------->O2                   -------->P                             --------->ANAC58                   =================================================MYC_MYB                   <---------At5g28300                    --------->ANAC58            >>>>>>>>>SPL4                                 --------->ANAC55(2)          --------->LBD16                                 --------->ANAC46         <---------ANAC58                                <-----------STF1         <---------ANAC46                                ----------->STF1                    <-------         <---------ANAC58                               ------>NtERF2                       <--------        --------------->AtSPL8                         ----------->TGA1                   <---------AHL20(2)        --------------->AtSPL3                         --------->WRKY12               --------->ATHB12      <-----------GT1                                --------->At4g35610              <---------ICU4   <---------AHL20(2)                                <---------At4g35610              --------->ATHB51   --------->AHL20(2)   ============================================bZIP_DOF         <---------YAB1  <---------AHL20(2)    <----------DOF2             --------->ANAC46               <---------ICU4 -----AtSPL8>>>>>>>>>SPL5                       <---------AHL20(2)                ------>ZmHOX2a(1) ---->AtSPL8>>>>>>>>>SPL1                     <-----------TBP        <-----------GT1 --------->ICU4 ------->AHL20(2) <-----------GT1          ------->TEIL----------->HVH21       ------>ZmHOX2a(1)  --- -------YAB1--------->SPL7              <---------ANAC46<---------TGA2(2) <---------GLK1(1) >>>>>>>>>ARR2   attatttatttccgtacaatctaccgcttaatgtctctctctacgtatatttatacgctgacgtcactgtttatcgatttcctcctcattatttgattgt  4254500                                                                                                    x                                                                                             <-------TEIL                                                                                          <---------DEAR3(2)                                                                                         <---------TOE1(2)                                                                                        <------NtERF2                                                                                      --------->ALFIN1                                                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                  xxxxxxxxxxxxxxxxxxx                                                           <------NtERF2          xxxxxxxxxxxxxxx>smallRNA(se3)                                                           --------->ATERF1(1)    xxxxxxxxxxxxxxxx>smallRNA(se3)                                                      xxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ANAC58                                                <------MYB46(1)                   xxxxxxxxxxxxxxxxxxx                                                <------MYB83<-----------RAV1(2)  xxxxxxxxxxxxxxxxxxxx                                               <---------AtMYB61                ---------->DOF2    >>                                     xxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxx>smallRNA(s)               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   *TSS       <--------P  ------>NtERF2       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2)xxxxxxxxxxxxx                                   xxxxxxxxxxxxxxxx>smallRNA(i)    <---------TOE1(3)  <---------ANAC58                                   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------TOE2(3)  <---------ANAC46                                   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ARR14(2)--------->ALFIN1 --WOX13(1)                       xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ----CBF          <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->GLK1(2)xxxxxxxxxxxxxx ------------>AtSPL8        ---------->DOF2<------NtERF2  ----------->RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tttgtacgcgtttaatggaaggagagacaacaaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaa  4254600               <---------AHL20(2)                            --------->At4g35610               <-----------GT1                               <---------ZAT2       <---------ETT(2)                         <----------ID1     <-----------HVH21                          ----------->GT1   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------------AGL15                 <-----------GT1 xxxxxxxxxxxxxx>smallRNA(le3)            --------------->AGL15            <---------AHL20(1) xxxxx>smallRNA(le3)                    <-----------------AG --------->ZAT2    <---------AHL20(2) xxxx>smallRNA(fl3)                     ----------------->AGL1            --------->AHL20(1) x>smallRNA(se3)  <---------DAG2        <-----------------AGL1         --------->AHL20(2) >>>>>>>>>>>>>>>LFY                   <-----------GT1        <---------At4g35610               <----- xx>smallRNA(se3) <----------DOF2 <----------DOF2<------ZmHOX2a(1)     <---------AHL20(2)      ------ xxxxxxxxxx>smallRNA(l2)        ---------->ID1 ----------->GT1   ----------->GT1  <----------DOF2   atcccactgtcaacaatttactttttttttttttgtctttttacaagaataggaaaaatagacagctgtgtaaaaaaatattaactttgttttgtttcca  4254700                                                                                   --------->YAB1                            --------->AHL20(1)                                ------>ZmHOX2a(2)                            <---------AHL20(1)                               <------ZmHOX2a(2)                           <---------AHL20(2)                               <---------AGP1                         <---------AHL20(2)                                 <---------ARR14(2)                         --------->AHL20(2)                                 --------->AGP1                         <-----------TBP                                    --------->ARR11(3)                       --------->AHL20(2)                                   <-----------ARR10                       ----------->TBP                      --------->At4g35610   <---------YAB1                      --------->ARR11(3)            ------>ZmHOX2a(1)       <---------ARR11(3)     <-                      <---------AHL20(1)            =================================HOX2a_HOX2a   <-                      <---------ARR11(3)            ================================HOX2a_HOX2a<----- ----HSFB2a(2)   <---------TOE2(3)         <---------At4g35610     *TSS     --------->ARR14(2)<------ --->HSFB2a(2)--------->AHL20(2)<-----------GT1     <---------------AGL15  <---------CCA1(2)  <------   caagtcgatgtccaaatttaagaatatatatatattacacgatttagctatctcctctaattagatgaagagacatcagatcttatcaaaaccctagctt  4254800  Previous    Next  AGI:  At3g13222.1    Description:  GIP1 (GBF-INTERACTING PROTEIN 1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41134.1); contains InterPro domain Protein of unknown function DUF1296 (InterPro:IPR009719) Range:  from: 4251021    to: 4254274    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13223.1    Description:  pre-tRNA. tRNA-Leu (anticodon: AAG) Range:  from: 4254535    to: 4254615    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g13224.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G40490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78130.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343) Range:  from: 4254767    to: 4257416    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version