Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->At4g35610            ------->TEIL  --------->At4g35610              <---------ALFIN1                                         --------- --------At4g35610                --------->ZAT18                                 --------->ARR14(2) ------->At4g35610                <---------ZAT18                                 --------->GLK1(2) -------->RAV1(1)                <---------ANAC58                                 ------->TEIL ----->RAV1(1)        --------->ANAC58                                            <---------ARR11(1) ---->HVH21           --------->ANAC58         ----------------->AGL1            <---------ARR14(1) ->At4g35610          --------->ANAC46         <-----------------AGL1            <---------CCA1(2) --At4g35610<----------DOF2      <---------ANAC58                     ------->TEIL<---------ARR14(2) >CDC5   --------->ARR11(3)     <---------At4g35610     <------ZmHOX2a(1)     <---------------------WRI1   cagcagaagcagagcttgaagtagaagccattgtagcgcacctcgatgttccacagtaggaatccatctatgtatgtttctgcgaatctctcaatgtttg  4244500                     --------->ARR14(2)    <---------SPL7                     <---------ARR14(2)   <---------ANAC55(2)              <-------GAMYB               --------->ANAC55(2)                                    <---           <---------At5g28300           --------------->AtSPL3                              <-------          <---------WRKY18(1)      --------->ALFIN1                                 --------->ZAT2         ----------->HVH21   <---------------AGL15                        <---------GLK1(2)  --------         --------->WRKY38(1) --------------->AGL15                      --------->ANAC58    ---------         --------->WRKY12   <---------ANAC58                            --------->ANAC58   <---------YAB1       <----------DOF2      <---------ANAC58                        <-----------HVH21    --------->YAB1 >ATHB12 --------->WRKY45   <---------ANAC46                   --------->ARR11(3)   --------->At4g35610   ggaccatgtctttgaccgttgcagatagtttcttgaagtggaagacgtactcggtttcatattatgaccttgtcaagcttctcagtagctgtgatgatat  4244600               --------->ANAC58      <---------ARR14(2)     <---------CCA1(2)   <---------ANAC58   <---------ANAC46   <---------ANAC58    <---------YAB1 ------YAB1    --------->ANAC46            <---------DAG2                      --------->At4g35610 --ARR11(3)    --------->ANAC58--------->ARR11(3)                           ---------->DOF2 ->ARR11(3)<----------DOF2     <---------ARR11(3)                      ----------->GT1       *TSS >YAB1--------->ARR14(2)      <---------CCA1(2)              <---------WRKY18(1)       --------->At4g35610   tgatagcgtatcgctctacgaaattctcatacatatctctctcacccttatcgttcaataacttgacctccatctgttaaaagctgaagagctgtatcaa  4244700                                                                               --------->ANAC58                                                                           <-----------GT1                                                --------->DAG2       <---------YAB1                    --------->AHL20(2)    <---------TOE1(3)        <---------ICU4                  ----------->GT1         <---------TOE2(3) <---------At4g35610--------->ANAC58          <---------ICU4            <---------TOE1(3)       --------->At4g35610--------->ANAC46         ----------->TBP            <---------TOE2(3)      ------->TEIL <---------CCA1(2)         <---------ATHB12<---------AHL20(2)    ---------->DOF2     --------->YAB1         --------->AHL20(2)    <---------ANAC55(2)   <------ZmHOX2a(1)--------->YAB1  --------->YAB1     ------------>CBF    --------->AHL20(2) <------ZmHOX2a(1)     <---------ATHB12   ----------->GT1   gttcaaaatcaataaataccaagttaataaatcacgttaaggttaaggaaaaagaggaatgcagcttaatcatcatatcacaagacatggataatccaag  4244800                                                               --------->SPL7                                                            <---------ANAC55(2)                                                            <---------ANAC46                                                            <---------ANAC58                                                            <---------ANAC58                                                       <---------AHL20(2)                                                      --------->AHL20(2)                                                   <---------YAB1 ----------->HVH21                                                  --------->AHL20(1)                 <---------TOE2(3)                <---------AHL20(2)      <---------YAB1                              <---------AHL20(1)                               <-    <---------ICU4                                --------->AHL20(2) --------->ANAC58 ------>ZmHOX2a(1)    --------->ATHB51              ------>NtERF2  --------->AHL20(2)  --------->ANAC58 <----------DOF2 --------->TOE2(3)          <----------DOF2    --------->TOE2(3) <-----------HVH21<---------ARR11(3)   tttccataatttttgtattaagttttgggcctttgaggcccattaacaacattatatttaatgcgtatgtcacgctgtgttcaaaatcctttttcttccc  4244900                                         --------->GLK1(2)                                        <---------GLK1(2)                                       --------->HSFB2a(1)            --------->LBD16                                      --------->ICU4                 --------->ANAC58               -                                    ---------->DOF2                  --------->ANAC58           -----                                 ------>NtERF2               <-------TEIL                       -----                                 --------->LBD16       <---------STY1(1)                        -----                               --------->SPL7          --------->STY1(1)                       ------                              <---------ATERF1(1)     --------->TOE1(2)  --------->ANAC58      <-----                             <---------SPL7           --------->TOE2(2)  --------->ANAC58<---------At4g35610                            <---------ANAC58    ------>ZmHOX2a(2)    --------->ANAC46    <---------HSFC1(2)          --------->YAB1    <---------ANAC58    --------->YAB1      <---------LBD16      --------->HSFC1(2) ---------DOF2 --------->ANAC46<---------LBD16 <------ZmHOX2a(2)----------->HVH21        --------->HSFB2a(1)   tcttttccaaaatcaaaacgcgatttcatggcctccggcaaagattccgatcgtaacctagggtacatgacccgcaaggatgcagaattgaagcttccac  4245000                               --------->WOX13(1)                             <------NtERF2                            ------>NtERF2                           --------->RRTF1(3)                           --------->DEAR3(1)                           --------->RAP2.3(2)                           --------->RAP2.3(3)       --------->ARR14(2)                           --------->RRTF1(2)        <---------ARR14(2)                          --------->RRTF1(1)         <---------GLK1(2)                           ----                          --------->RAP2.3(1)      ----------->ARR10                             <---                          --------->ERF1         <---------ZAT2                                ------     <-----------RAV1(2)  --------->ATERF1(1)  ------>NtERF2                                 <------- ---------->HVH21        --------->LBD16      --------->DEAR3(1)                            <-------- ---->ANAC58             ------>NtERF2     --------->DEAR3(1)                           <---------GLK1(1) ---->ANAC46             <---------RAP2.3(1)--------->ABI4(1)              --------->ANAC58 <-------- ---->ANAC58             <---------ATERF1(1)------>NtERF2                  --------->ANAC58 <-------- --->LBD16              <---------DEAR3(1)--------->MYB46(3)<---------HSFB2a(2)         --------->GLK1(1) ----LBD16             <---------LBD16   <---------At5g28300--------->HSFB2a(2)        ----------->ARR10   ggatgacccaggtcaaaaacaagactccggcgccaatccaaatcaccgccgagcagatacttagagaagcgcgagagaggcaagaggctgagttccgtcc  4245100                                                  <-----------HVH21              --------->ALFIN1                                                 <---------TGA1a                <---------SPL7                             ==============================bZIP_DOF            --------->DEAR3(1)                             <----------DOF2     <---------bZIP60(1)           <---------ANAC46                      <---------At4g35610        --------->bZIP60(1)           <---------ANAC58                      ----------->RAV1(2)        --------->TGA1a               <---------ANAC58 -->NtERF2            --------->At4g35610        --------->O2             --------->ARR14(1) ---NtERF2            --------->ZAT2             <---------O2            --------->ARR11(1) --->SPL7             <---------ZAT2  --------->ZAT14                    <---------ARR14(2) --SPL7             <-----------RAV1(2)        ------>NtERF2             --------->ARR14(2) -ANAC58       ----------->HVH21      <---------ZAT14     <------ZmHOX2a(1)<-------TEIL        ------ -ANAC58   <---------ATHB12--------->At4g35610--------->DEAR3(1)         <---------GLK1(2)     ------ -ANAC46 --------->WOX13(1)<---------At4g35610----------->HVH21        ----------->ARR10       ------   gcctaatcagacaatcactgactcagctgagctttccgactacagactccgacgtcggaaggagttcgaagaccagattcgccgtgcgagattgaacacc  4245200                                                               --------->ALFIN1                     --------->ALFIN1                <---------HSFB2a(2)                           --                 --------->ZAT18                 <---------ZAT18                                -----                --------->ANAC46                 --------->ZAT18                              -------               <---------LBD16                  <---------ANAC58                             --------            <---------GLK1(1)           --------->ARR14(2)   --------->ALFIN1                <-------            --------->GLK1(1)           <---------ARR14(2) <---------ANAC58                 <--------         ----------->ARR10 <---------HSFB2a(1)  <---------ANAC46                   ----------->GT1---      <-----------HVH21   ----------->ARR10     <---------ANAC58          --------->TOE2(3)--------->MYB52(1) --->ANAC58 --------->CCA1(2)      --------->At4g35610     <---------ANAC46       <------ZmHOX2a(1)<- --->ANAC46<---------ARR14(2)      <---------At4g35610     <---------ANAC58      ----------->GT1<---- --->ANAC58--------->ARR14(2)    <-----------RAV1(2) --------->HSFB2a(2)------->TEIL      <----------   caagtttgggtcagatatgcgcagtgggaagagtcgcagatggatttggagcgtgctcgaagcgtgtgggaacgagccttagaaggagaaaattaccgga  4245300   --------->ANAC58   --------->ANAC58   --------->ANAC46 <---------ALFIN1 ------->AtMYB61                                                          =======================HOX2a_HOX2a ---->ARR14(2)          <---------ARR14(2)                                ------>ZmHOX2a(2) -->LBD16          --------->ANAC58                                       <---------ANAC58 ->HSFB2a(2)       --------->ANAC58                             --------->HSFB2a(1)                 < --HSFB2a(2)--------->WRKY18(1)--------->At4g35610           <------ZmHOX2a(1) <----------DOF2      - -LBD16    <-----------HVH21   <---------At4g35610           ====================HOX2a_HOX2a        - ------>MYB46(3)  --------->ZAT18                   --------->ANAC46      <---------ANAC58         -- --------ALFIN1   --------->SPL7                 <---------WRKY38(1)    --------->ARR14(2)       <--- -----ARR14(2)<---------------AtSPL8             <---------WRKY12       <---------ARR14(2)------>ZmHOX2a(1) -GT1      <--------ZAP1--------->ARR14(2)     <-----------HVH21<---------HSFB2a(1)      <---------ALFIN1   accacacgctctaggtcaagtacgccgattttgagatgaagaacaagtctgtcaacgaagcgaggaacgtttgggatcgtgctgtttcgctcctccctcg  4245400  Previous    Next  AGI:  At3g13205.1    Description:  pseudogene of vacuolar protein sorting-associated protein Range:  from: 4244289    to: 4244693    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13210.1    Description:  crooked neck protein, putative / cell cycle protein, putative. similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G41770.1); similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82520.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81550.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopept Range:  from: 4244928    to: 4247853    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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