Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      --------->LBD16                                    ----------->HVH21                                 --------->MYB52(1)                                 ------>NtERF2                                <---------ALFIN1                                --------->DEAR3(1)                               --------->ATERF1(1)                               <---------ABI4(2)                               --------->MYB46(3)                        ------>NtERF2 <---------ARR14(2)                       ----------->HVH21 ----------->GT1         --------->GLK1(2)    ------>NtERF2        <---------GLK1(2)     <---------ATERF1(1)                                               <----        <---------ARR14(2) <---------ATERF1(1)                                           --------->MYB52(1)        --------->ARR14(2)<---------DEAR3(1)                                          --------->ANAC58 -------------->AGL3  --------->LBD16 --------->ARR14(2)                              --------->ANAC58 -->HSFC1(2)         --------->ANAC46 ------->TEIL                                --------->ANAC58 -->HSFB2a(1)       <---------LBD16--------->DEAR3(1)                             --------->ANAC58 ---HSFC1(2)     --------->GLK1(1) --------->MYB46(3)        --------->LBD16      --------->AtLEC2 ---HSFB2a(1)    <---------GLK1(1)<------NtERF2    <------ZmHOX2a(1)            <-----------RAV1(2)   tccaaattcagattctgagatttccgcgacggagccaccggacctgaaaaataggaaattttccgagagattgaagacagaaccaggcaaacaacgtcga  4239800                  <---------AHL20(2)           <-----------GT1        <---------YAB1       <---------AHL20(1)      --------------->AGL15      --------->ATHB51         <---------------AGL15                                               <-      --------->AHL20(2)      ----------------->AGL3                                           <-----     --------->ICU4           ----------------->AGL2            <-----------RAV1(2)         <--------     <---------MYB52(1)---------->DOF2                        <-----------HVH21             <-------- -----ARR14(2)    --------->AHL20(2)                <-----------GT1                    <----------DOF2   tactgccattatttttctatttttttaaagaaaccaaaaacagtagagaactattcacctcttctatcaggcgaaaatggttttcgagtcttttgggttc  4239900                                --------->At4g35610                   <----------DOF2                 <---------HSFC1(2)                                               --------->ZAT2    --------->ANAC46            --------->ZAT2                                    --------->At4g35610    --------->MYB46(3)          <---------At4g35610                               ----------->RAV1(2) ---------DOF2   --------->HSFC1(2)            --------->ANAC46                   <---------ZAT2  <-- --TEIL         --------->GLK1(2)     ----------->GT1                            ==================== -ANAC58  --------->LBD16<---------ANAC58    --------->ANAC46    ------>NtERF2<---------ALFIN1 ------ -ANAC58 <---------LBD16 <---------ANAC58--------->CCA1(2)      --------->ANAC46 <-----------RAV1(1)-   gcttaaacgaccctggagaagctttctgcgtttcagcagacagataaacgcgaaatgagagcaattgcgccatggatgctccactgctggagctagagcc  4240000                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                          --------->GLK1(1)                                                                                          <------ZmHOX2a(2)                                                        <---------MYB46(3)               <-----------ARR10       <---------GLK1(1)                                <------MYB83                     <---------ARR14(3)       --------->GLK1(1) --------->At4g35610            <------MYB46(1)                  --------->ARR14(2) --------->TOE2(2)       <---------At4g35610           <---------AtMYB61                 --------->ARR11(3) --------->TOE1(2)     --------->HSFB2a(2)          --------->ALFIN1                     <---------ARR14(2) <---------LBD16  *TSS <---------HSFB2a(2)  ------>NtERF2                                <---------AGP1 -------ALFIN1--------------->AtSPL3        --------->LBD16                              <---------ARR11(3) ===========RAV--------->YAB1              --------->ANAC46                             <---------CCA1(2) ----------->AGL1 <---------TOE1(2)       <---------LBD16<<<<<<<<<<MYB80          <----------DOF2 ---------->RAV1(2) <----------DOF2   <----------DOF2 <--------P       ---------->DOF2  <---------At4g35610   aaacctgggaactcttatcgtactttcagaagaaaacactcttttccgccaagagtgttggtttaatgggcctaaaagcccatactttgcagatctcaat  4240100                                                                --------->ANAC58                                                                ----------->GT1                                                                --------->ANAC46                                                                --------->ANAC55(1)                 <                                                                --------->ANAC58                    -                                                                --------->ANAC55(2)                 -                                 <----------DOF2                <---------ANAC55(2)                 <                     <----------DOF2                 ---------->DOF2                                -           ------>NtERF2      <-----------GT1     --------->ANAC46                                  <         <---------RAP2.6(2)  ---------->ID1      --------->ANAC58             *TSS                 <  ------------>CBF   <---------DAG2      <-----------GT1----------->GT1     ---------->DOF2 --------- --->CBF--------->RAP2.6(3)  <-----------GT1      --------->ANAC58   --------->ICU4------>ZmHOX2a(1)-   ttagttcaatttcggcccgtctacttttttttttcctttttttttacatttaacgcaaaggcaaaaacgtaattatctaaaagtcctcttcttccccagt  4240200                                   <---------ANAC58                                   <---------ANAC58                                  <---------At4g35610                               <-------GAMYB                              <---------MYB46(3)                              --------->MYB55(2)                              <-----------RAV1(1)                            <---------At4g35610                            --------->At4g35610                            <------NtERF2                 =================RAV --------->ARR14(2)        <------MYB83        <-------GAMYB        <------MYB46(1)    ------>NtERF2------>ZmHOX2a(2)  ------>ZmHOX2a(1)        <---------ERF1 <---------------AGL15     <---------RAP2.3(1) --------------->AGL15    <---------RAP2.3(3) <---------MYB59 <-----------RAV1(1)  <---------ARR14(2) -----------------AGL1    <---------RAP2.3(2) ---------------->AGL1    <---------RAP2.6(2) ---------------->AGL2    <---------ATERF1(2) -----------------AG      <---------DEAR3(1) ---------------->AG      --------->ATERF1(2) -----------------AGL2   --------->ATERF1(1) -----------------AGL3  <---------ATERF1(1) >LBD16--------->MYB59====================RAV ---------------->AGL3<-----------RAV1(2)                                                          --   tttcctaatttggtaacccttgttgcaggcggctgttgctgatcgggtctctcttctccattttccgattagtaagtgtttattctactcattttgtcaa  4240300                                                                                                  ---                                                                                                  <--                                                              ------->MYC3                       <---             --------->AtLEC2                     <----------DOF2                                ----        --------->TOE2(3)                 --------->DAG2      <-------MYC3                      -----        --------->YAB1                   --------->DAG2      --------->ANAC55(2)                <----  --------->YAB1                        ---------->DOF2      <---------ANAC55(1)         <----------DOF2 ------->RVE1(1)                     --------->YAB1 <---------AHL20(2)       ---------->DOF2 <-------   aatatcacaatgttaatgcaaatttacatatatcaactatcaaaaaggcaatcttttattgaaacgtgttctaagtttgaaaagactaaaactttcactg  4240400                                                 ------->PIF4                                                 ------->PIF5                                                 <-------MYC4                                                 <-------MYC3                                                 <-------PIF5                                                 ------->MYC3                                                 ------->MYC4                                                 <-------MYC2                                                 <-------PIF4                                                 ------->MYC2                                                ============================bZIP_DOF                                                <---------ANAC58        <------ZmHOX2a(1)                       ==========================================bZIP_DOF --------->At4g35610                            <---------ANAC46 <---------At4g35610                            =====================================bZIP_DOF ------>At4g35610                               <---------TGA1a -------At4g35610                               <---------ANAC58               ====================== --------RAV1(1)                       --------->ANAC58                        ---------->DOF2   ---- ----->ALFIN1                  <-----------------AGL1              ----------->GT1              ----- ---->ZAT14                --------->ALFIN1     --------->TGA1a   --------->DAG2                <---- -----ZAT14              <---------O2  --------->ANAC58          ---------->DOF2               ------ --At5g28300      <------ZmHOX2a(1) --------->ARR14(2) ----------->HVH21  ---------->DOF2      ------   tgctgctgtaggattaactaggaagtcatgtggttcagaataggcaattcacgtgcaatgacagagataaagtaaaaaaagaaaagtatagaggtacccg  4240500                         ------->MYC2                         <-------MYC3                         ------->MYC3                         <-------MYC2                        --------->ANAC55(2)                        --------->ANAC58                        <---------ANAC55(2)                        =================================================bZIP_DOF                        --------->O2                        <---------TGA1a                        --------->ANAC46                        --------->bZIP60(2)                        --------->TGA1a                        --------->ANAC58                        <---------O2                    <-----------HVH21                         <----------DOF2                 <---------TGA1a                        ------>NtERF2    =======================bZIP_DOF                  <---------HSFB2a(1)    =======================bZIP_DOF                  --------->HSFB2a(1)                 ------------    <----------DOF2----------->HVH21                 <---------ZAT2                      <---------TOE2(3) ==========================bZIP_DOF                  <---------HSFC1(2)           <---------ZAT14 ------->HVH21   --------->TGA1a                     --------->HSFC1(2)           --------->ZAT14   < ---->LBD16  --------->ANAC58                        <---------At4g35610     --------->ZAT14  ------- -------HVH21--------->ANAC46    --------->ATHB12    --------->ZAT2   ------>ZmHOX2a(1)  <---------TOE1(3) --->ANAC46  --------->ANAC58   --------->ICU4       --------->At4g35610     <---------ZAT14 <-------TEIL --->ANAC55(2)  ------->TEIL    <---------YAB1      ------->TEIL   ------>ZmHOX2a(1)     <-----------   tgacctctttcttacacgaacgtgacacgtgagcatgattgtacattagagacgaagctgccctctttcctccttccattacagtgttcttaaggtacaa  4240600        <-----------GT1                       <<<<<<<<<TBF1      <----------DOF2                     <---------ARR11(3)                                   <----- --->AtSPL3                               --------->ARR11(3)                         <---------ANAC58 ---------YAB1 ==================================MADS_MADS            <------ZmHOX2a(2)---------->ID1 -->REM1(1)    <---------------AGL15  ---------->DOF2           --------->MYB52(1)   <---------ANAC58 ----AtSPL8<----------DOF2       --------------->AGL15         ---------->DOF2     <-----------GT1   ctatgtttctttactttctcttcagggcattgctacttcttaaagttcttcttcccattgacaaacaaagggatcagtgtttttatttcgtcccttcctt  4240700  Previous    Next  AGI:  At3g13180.1    Description:  NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein. similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45139.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678) Range:  from: 4236024    to: 4240018    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13190.1    Description:  myosin heavy chain-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45150.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545) Range:  from: 4240179    to: 4241968    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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