Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ANAC58                              --------->ZAT2                          --------->YAB1                                                          <--          ----------->HVH21   <---------At4g35610             --------->At5g28300                 <--          ------>ZmHOX2a(1)   <---------ZAT2                 ----------->GT1                     <---        ----------->RAV1(2)   --------->At4g35610       <---------AHL20(2)                      -----      <-----------GT1    <---------YAB1          --------->At4g35610       <---------ARR11(3)   ----- --------->GT1  <----------DOF2  <-------TEIL    <---------At4g35610<-------TEIL                ----- ------->GT1    <---------MYB52(1)    --------->ANAC58  --------->AHL20(2) --------->ARR11(3)  ------   agtgaaaatttcctgaccctttggtttatcagagctgcataagctatagacagcagaataaaatggtaaattcatgaggtcttagttttcaatactcgtt  4233800                                              ============================bZIP_DOF                                              ============================bZIP_DOF                                              <---------ANAC55(2)                                              --------->ANAC55(1)                                              --------->ANAC58                                              --------->ANAC46                                              --------->ANAC58                                              <---------TGA1a                                              --------->TGA1a                                            <---------ALFIN1                                          ------>MYB46(1)                                          ------>MYB83 --------->ALFIN1                       <---------MYB59 -------TOE1(3)                         --------->AtMYB61 -------TOE2(3)                   ======================bZIP_DOF   ---------->DOF2 ------DOF5.7(2)                  ---------->DOF2              ---------->DOF2 ------>TGA1                     --------->TOE1(2)            --------->YAB1 ---->WRKY12               --------->HSFB2a(2)--------->O2   <---------ATHB12 ------>HVH21              <---------HSFB2a(2)<---------O2 --------->WOX13(1)      --------->AHL20(2) --->DOF5.7(2) ------>ZmHOX2a(1)--------->MYB46(3)  <---------GLK1(2)----------->GT1            <----   gacgttgtgcttaaatccttcaaaaatgtctcgaaccaaagaccaaacacgtctgattcttcaatcaaagaaagtgaaaacaaaattgaataatcgagat  4233900                                                                                       <------ZmHOX2a(2)                                                                                      <---------ARR11(3)                                                                                      --------->ARR11(3)                                                                                      <---------AGP1                                                                                      <---------ARR14(2)                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                      --------->AGP1 <---------CCA1(2)                       <---------HSFB2a(2)                            <---------ARR14(2)                       --------->HSFB2a(2)                            --------->ARR11(3)                    --------->GLK1(2)                                 --------->ARR14(2)                   <---------GLK1(2)       ===================================HOX2a_HOX2a      ------                  --------->At4g35610      ====================================HOX2a_HOX2a    <------                --------->YAB1 --------->AtLEC2                       <---------ARR11(3)      <------               <---------ATHB12--------->ANAC46      --------->ATHB12 <-----------ARR10--------->CCA1(2)              ------>MYB46(1)  --------->ANAC58    <---------WOX13(1) <---------ARR14(3)      -------              ------>MYB83  <-------TEIL   ------>ZmHOX2a(1)          --------->ARR14(3)------>ZmHOX2a(2)    <----------ID1<---------At4g35610      --------->LBD16           --------->GLK1(1)--------->ARR14(2) --ZmHOX2a(2)--------->WOX13(1)--------->ANAC58  --------->ATHB12    <---------GLK1(1)--------->AGP1   cgaagagagacaaaccaatcagcttctggattcatgcaatagttcctgaattgattgatggaaatttttggagatcttccttcagccagatctacaacga  4234000          --------->GLK1(2)          <---------ARR14(2)          --------->ARR11(3)          <---------ARR11(3)          --------->ARR14(2)    ----------->GT1                                       --------->ZAT14 ->GAMYB  <-----------ARR10   --------->YAB1            <------NtERF2      --------->HSFC1(2) ---MYB55(2)          --------->MYB52(1)         ---------->DOF2           <---------HSFC1(2)<------- ---MYB52(2)  <---------At4g35610             ------->GAMYB                --------->HSFB2a(1) -->MYB46(3)  --------->At4g35610          --------->MYB52(1)              <---------HSFB2a(1)<------ZmHOX2a(1)   ccgattgagtaaaatctgctcaaaaaaccgaaacatagtgatgaacaacggaagagccagcgaagtcatcgactagaaatttcgacatagattagaggac  4234100                                                                                                   <-                                                                                               <-----                                                                                             <-------                                                                                    <---------HSFC1(2)                                                                                    --------->HSFB2a(1)                                                                                    <---------HSFB2a(1)                                                                                    --------->HSFC1(2)                                                                                   --------->ARR14(2)                                                  ------>ZmHOX2a(1)                <---------ARR14(2)            <---------ARR14(2)                  ------>ZmHOX2a(2)                  <-----------ARR10 <-----------GT1----------->GT1           <----------DOF2            --------->GLK1(2)    --------->ANAC46 ---ID1   <---------YAB1           <---------YAB1 <----------DOF2   <---------GLK1(2) <-----------GT1   aaattactcaatacgattcggaaaattttgggattttctgatacctttgatcctttgaagcaaattagtcgattctgaaatagcgaattttccctccatc  4234200                                                                                          --------->TOE1(2)                                                                                          --------->TOE2(2)                                     ------->TEIL                                  <---------MYB52(1)                               <---------WRKY12                             <---------ANAC58                               <---------WRKY38(1)                          <---------ANAC58                               <---------DEAR3(1)                <---------ANAC58 <---------RAP2.6(3)                               <---------ETT(2)                  <---------ANAC58----------->GT1   -- ---------DOF2             <---------AtMYB61             --------->DAG2  --------->DAG2   --------->TOE1(3) ----CCA1(2)           ------------>CBF      --------->ETT(2)   <---------MYB46(3)<-------GAMYB    <- --ALFIN1      ----------->GT1 --------->ETT(2)         ---------->DOF2 ---------->DOF2  <---------HSFB2a(1)   tctttcgagtttcaaaactgaaaaatgcaatggtcgacgaatttttgtagacgggaagaaaagggatgggtgcgaaaagcttgccgttaaaaccttcgaa  4234300                                                                         <---------ANAC58                                                                         <---------ANAC46                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(2)                                                                         <---------ANAC55(1)                                                                         --------->TGA1a                                                                         --------->O2                                                                         <---------ANAC58                                                                         <---------bZIP60(2)                                                                         <---------O2                                                                         <---------TGA1a                                                                      =============MYC_MYB                                                                      ----------->HVH21                                                                      ----------->TGA1                                                                      ------->GAMYB                                                                     <------------AtMYB77                                                                     ==============MYC_MYB                                                                --------->ANAC58                                                                --------->ANAC46                                                                --------->ANAC58            <---------ANAC46                                    --------->ANAC55(1)            <---------ANAC58         <---------MYB52(1)         --------->ANAC55(2)            <---------ANAC58         --------->ALFIN1           <---------ANAC55(2)       --------->ANAC55(2)         <---------ANAC58            <-------TEIL       <---------ANAC55(1)         <---------bZIP60(2)       --------->ARR14(2)       <---------ANAC58            <---------ANAC46        --------->ANAC58                   <------       <---------ANAC46            <---------ANAC58        --------->ANAC58                   -------       <---------ANAC58         ----------->HVH21     --------->MYB59<---------MYB52(2)       -------      <-------TEIL              ----------->TGA1   ----------------------->TaNAC69(2)         <------    --------->TOE1(2)         <---------AtLEC2    <----------DOF2  --------->MYB52(1)    --------->ANAC58    --------->TOE2(2)     <----------DOF2         =================================bZIP_DOF ------->TEIL ------->AHL20(2)       <---------TOE1(2)   <------------CBF <---------MYB52(1)          --------->ANAC58 --------AHL20(2)      ------>ZmHOX2a(1) >>>>>>>>>>>>>>>>>LFY<---------ARR14(2)   --------->AHL20(2)   tttaaacatgcgtgtcgtttagttcctactttccatgacgttgggccattggcatttaggcccgatacgtaactgacgtgtcattttaaaaacgcatgtg  4234400                                                                                          <---------AHL20(2)                                                                                --------->YAB1                      <----------DOF2                                          <---------ATHB12                 <---------MYB52(1) --------->ANAC46                       ------------>CBF                <-------GAMYB      ------>ZmHOX2a(2)                   <---------ICU4     -----------               <---------MYB46(3) <------ZmHOX2a(2)          ---------->DOF2 --------->WOX13(1) -MYC2   <---------MYB52(1)      --------->ARR14(2)    ----------->GT1 --------->YAB1     --------->AHL20(2) >MYC2   --------->ALFIN1        <---------ARR14(2)  <------------CBF <---------YAB1    ----------->TBP >MYC3  <-------MYC3 <---------ANAC58          ---------->DOF2     <-------TEIL<<<<<<<<<ARR2       -- -MYC3  ------->MYC3 <---------ANAC58--------->LBD16--------->ATHB12--------->YAB1  ------------>CBF<   tttttaaacacgttgggccgttggcttttaggcccgatccgaaactaggcaaagtgattgtgaaaaagattcatgataacaatcaaaccaatataaatcg  4234500                                                 --------->ZAT18                                                 --------->ZAT14                                                 <---------ZAT14      <---------TOE2(3)                                                 <---------ZAT18    <---------AHL20(2)                                               <-------MYC3         --------->AHL20(2)                                            <---------ICU4         <---------YAB1                                            --------->YAB1       <---------ICU4                                         --------->YAB1         --------->ICU4----------->GT1 >TBP                               --------->AHL20(2)          <---------ATHB51 ------->AHL20(2)                 --------->AHL20(2)            --------->AHL20(2) ---------AHL20(2)         <---------bZIP60(1) ------->MYC3     <---------AHL20(2)   atttattcagacttggagacattttagtgatgccaatataaaataatcatgtgcactaaatttgaaataattaatgtgtatggtaaactagattagaatt  4234600                                                          <---------HSFB2a(1)                                                          --------->HSFB2a(1)                                                  ------->MYC3                                                  ------->MYC2                                                  <-------MYC2                                                 <---------O2                                                 --------->O2                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC55(2)                                                 --------->TGA1a                                                 --------->ANAC46                                                 --------->bZIP60(2)                                                 <---------TGA1a                                               <------------OsbHLH66                                             ----------------->PIF3(1)                                             <-----------HVH21              <---------MYB46(3)            ----------->HVH21                    --------->YAB1             <---------AtMYB61         <---------YAB1  <------ZmHOX2a(1)   <---------ARR11(1)  <---------HSFB2a(2)              <---------DAG2<---------ANAC55(2)       --------->GLK1(2)        <  --------->HSFB2a(2)              <----------DOF2<-------MYC3             ------->TEIL           ---  >>>>>>>ZML2<---------ZAT6        ========================bZIP_DOF       <---------ARR14(1)      <--   agttctagacttctagtggtcgagatttgttcataagctttatgctcggacacgtgaggaacataccaaaatgttcgaatctattatgccatacacttat  4234700  Previous    Next  AGI:  At3g13170.1    Description:  ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing). similar to RHL2 (ROOT HAIRLESS 2), ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G02820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45111.1); contains InterPro domain Meiotic recombination Spo11 (InterPro:IPR013048); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A, N-terminal; (InterPro:IPR013049); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A; (InterPro:IPR002815) Range:  from: 4231567    to: 4234199    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version