Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  ------>ZmHOX2a(1)                                                            --------->GLK1(2)                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                         --------->ANAC58                                                        ------>NtERF2                                                    --------->ANAC46                          ------>MYB83              --------->ANAC58                              ===        <---------ZAT18   ------>MYB46(1)           --------->ANAC58  ----------->HVH21           ===        --------->ZAT14--------->DEAR3(2)          ------>ZmHOX2a(1)<----------DOF2               --- <---------DAG2       --------->MYB52(1)   --------->YAB1--------->ANAC58            --------->ANAC55(2) <----------DOF2   --------->YAB1        <---------WOX13(1) ------->TEIL    --------->ATHB12 <-------   acactttctgtgcattctcaaacataccgactcgtccatagagattgataatcctcgccacgaatccttcctttgacatgtttggatacttgttctgctc  4230900                  --------->ANAC46                  --------->ANAC58                  --------->ANAC58                 ------>MYB83          --------->HSFB2a(2)                <------NtERF2          ------>ZmHOX2a(1)                <---------DEAR3(1)      ------>ZmHOX2a(2)                 ----------->HVH21     --------->GLK1(1)               ------>NtERF2     <------ZmHOX2a(2)               <------NtERF2     <---------GLK1(1)              ------>NtERF2--------->SPL7                             <--------    <---------ARR11(3)              <---------RAP2.3(1)                                     <--------    <---------ARR14(2)             <---------ANAC46                                         <--------    <---------ARR14(3)             <---------DEAR3(1)                                <---------ALFIN1    --------->ARR11(3)            <---------LBD16<---------------------WRI1         --------->MYB46(3)    <-----------ARR10             <---------ABI4(1)                               --------->ARR14(2)    --------->ARR14(3)            --------->At4g35610                             <---------ARR14(2)    --------->ARR14(2)            --------->ATERF1(1)                           --------->LBD16   <---------GLK1(2)              <------NtERF2 --------->MYB52(1)             --------->HSFB2a(2)   <------ZmHOX2a(1)              <---------At4g35610                          --------->ANAC55(2) --------->LBD16 ------>MYB46(1) <---------RAP2.3(1)                           <---------HSFB2a(2) ============HOX2a_HOX2a         <---------ERF1<---------SPL7                  --------->ANAC46 ===========HOX2a_HOX2a         <---------RAP2.3(3)                           <---------LBD16 --->ZmHOX2a(1) <---------ALFIN1<---------DEAR3(1)                 <---------At4g35610     <---------ZAT2 --At4g35610   --------->MYB46(3)<---------ATERF1(1)               --------->At4g35610     --------->ZAT2   ctccaggatctcctcgacccactcaaacttcttggctgcggcgagacggcgaacggttctctcatagacagctatattcttccggaaccactctgcttgg  4231000                                                                                                    -                                                                                                    <                                                                                                   <-                                                                             <---------ANAC58      --                                                                             <---------ANAC46   -----                                                                             <---------ANAC58--------                                                                          <---------DEAR3(1) <-------                                                                          --------->ALFIN1   <-------                                                                        <---------ANAC58     --------                                       --------->SPL7                   <---------ANAC58    ---------     <---------ANAC58               <---------ANAC46                   <---------MYB46(3) <------NtERF2     <---------ANAC58               <---------ANAC58              <---------DEAR3(2)      <---------At4g35610  <----------DOF2                   <---------ANAC58             <---------DEAR3(1)  --------->ALFIN1 -ANAC58                 ------->TEIL  <-------TEIL            ------------>AtMYB77  <---------RAP2.6(2) -AtLEC2          --------->LBD16  <------NtERF2              ----------->HVH21    --------->ALFIN1-- -ANAC58        <---------LBD16  --------->ATERF1(1)          <---------SPL7<------NtERF2 --------->At4g35610   caggctttcttgaacttctccgtgatgaatttggggtcgcgttcgtcatttacgagggtgatgagggacggtttgggtggcgagggtgtggctgcagcag  4231100      <---------ANAC46      <---------DEAR3(1)          <---------At4g35610     <---------LBD16              --------->At4g35610    ------->GAMYB                --------->ALFIN1 <---------DOF5.7(2)           <---------ANAC58 --------->MYB52(1)            <---------ANAC58 ---------->HVH21             <---------MYB46(3) ---------ARR14(2)         <-----------RAV1(1) ----------HVH21         <---------ANAC58 ------->At5g28300       <---------ANAC46 ---->At4g35610          <---------ANAC58 ->ZAT2 <------NtERF2   <-------TEIL --At4g35610     <---------DEAR3(1)                       <------ZmHOX2a(1)               --------->At4g35610 --ZAT2--------->LBD16<---------ARR14(2)<---------At4g35610   --------->DAG2              <---------At4g35610 ->At4g35610    --------->At4g35610     --------->At4g35610  ---------->DOF2--------->ANAC58 -->RAV1(1)  ---------->DOF2 --------->ALFIN1        --------->ANAC58       --------->ANAC58 ------->DOF5.7(2) <------NtERF2<---------PCF2       --------->ANAC58     --------->CCA1(2)   cggtaacggcggagaagaagcggcgattcgtgtgggtgctgaagctgaagttgccacgaaggagaaagcgagagagagacgacatcgtttttagctgtat  4231200                                                                                          -----------                                                                                          <----------                                                                                    <------MYB83                                                                 --------->YAB1     ----------->GT1                                                              <----------DOF2       <------MYB46(1)                                                         --------->SPL7            --------->MYB46(2)                                       <---------TOE2(3)--------->MYB52(1)         --------->MYB59                           ------>ZmHOX2a(2)            <---------ARR14(2)     <------MYB83               <----------DOF2  <---------ZAT6          --------->ARR14(2)     <------MYB46(1)  -----       <-----------GT1   --------->ARR14(2)         --------->At4g35610       --------->MYB59*TSS <---------TOE2(3)       <---------ARR14(2)       <-----------RAV1(2)         <---------TOE2(3)------   gcaaaggtttttctcttcttttttttggatcggagtgttcaaaggtttttagtcaggggaacggctttaatacttcaaattaggtttggtaacaatataa  4231300        --------->TOE1(3)                                   <---------YAB1          <---------AHL20(2)        --------->TOE2(3)                                   --------->ICU4        <---------YAB1      ------->TEIL                                        --------->ATHB12      <--------HAHB4 ---->AGL15              <---------YAB1            --------->ATHB12            <---------YAB1 -----AGL15       <----------DOF2                  <---------ICU4      ------->TEIL--------->AHL20(2) ---->DAG2       <---------YAB1                <-----------GT1     <---------------AtSPL8 --------->AHL20(2) ---->DOF2     <-----------GT1--------->YAB1<---------ICU4<---------ICU4 <----------DOF2  <---------AHL20(2)   agcaaatgaaccctaaattacttttgtattattcaaaatttcaaacttattactcattagtcattagtgaatgtactttgtattattaaaaattaaaaac  4231400               --------->GLK1(2)           --------->YAB1                                                          --------->ZAT18      <---------YAB1                                                          <------MYB46(1)    --------->ATHB51              <-----------GT1                             <------MYB83    --------->AHL20(2)      <---------YAB1                                ------->TEIL    <---------AHL20(2)    --------->YAB1           <-------TEIL     --------->AtMYB61     ---------->DOF2   tgagaattattttttataatctgtatatttatgatttttccattaaaactatgttcatttgtccattctaccaatgcatttggtttgcactaaaaagctt  4231500                                                                                          --------->TOE2(3)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                        --------->GLK1(2)                                                                                        ------->TEIL                                                                        <---------At4g35610                                                             <---------At4g35610        <---------ARR11(1)                        <---------ICU4                       --------->At4g35610  --------->ANAC46      --------->YAB1 --------->YAB1                         ------->TEIL--------->At4g35610   agaaagagtcataaaaaaaacaatgagcattaccttgagttggagactagttatctcgtatgaagctcaaggagagcttacttcacgacgaatcttagaa  4231600                                   --------------------->WRI1                               --------->ZAT14                  --------->DAG2 <---------At4g35610                 ---------->DOF2 --------->At4g35610                                         --------           ----------->HVH21   --------->ZAT18             <---------WRKY18(1)               --------     <-----------GT1           <---------ZAT14            ----------->HVH21                ------>MYB46(1)  <---------ARR11(3) <------ZmHOX2a(1)            ------>ZmHOX2a(2)<----------DOF2         ------>MYB83  --------->ARR11(3) ====================================HOX2a_HOX2a                       -------->P   ggaatatatacctctgacaaaaaggacagtgagtgaactgagagtgcttcgatctcaaacttgacccctcttttcaacatcgtttcaagttccaacctta  4231700                                                                                                    -                                                                                                    -                                                 --------->AHL20(2)                                 -                                               ----------->GT1        ----------->ARR10           <--   --------->AtMYB61                    <-------GAMYB         <-----------HVH21         ============= ->TOE2(3)                             <------MYB46(1)      --------->DAG2              <-----------RAV1(1) ->TOE1(3)                             <------MYB83        ---------->DOF2         >>>>>>>>>>>>>>>>>LFY   gacgaccaaaatcgttttgatcaagactagtttttgtcatttggttgaaatgtaaatataaaaaagtcagggaagtttttcatacctccattgtggcatt  4231800  Previous    Next  AGI:  At3g13160.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G55890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65949.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4229978    to: 4231293    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13170.1    Description:  ATSPO11-1; ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing). similar to RHL2 (ROOT HAIRLESS 2), ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G02820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45111.1); contains InterPro domain Meiotic recombination Spo11 (InterPro:IPR013048); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A, N-terminal; (InterPro:IPR013049); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A; (InterPro:IPR002815) Range:  from: 4231567    to: 4234199    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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