Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ------>NtERF2                                         <---------DAG2                     --------->LBD16                                       <----------DOF2                    --------->ANAC58                                    ------>NtERF2                    --------->ANAC46                                 ------>ZmHOX2a(1)                    --------->ANAC58    ---------->DOF2             --------->TOE1(2)                   <---------LBD16   --------->TOE2(3)           --------->ARR14(2)               <----------TaMYB80 --------->GLK1(2)              <---------ARR14(2)               --------->HSFB2a(1)--------->ARR14(2)            --------->GLK1(1)              <---------TOE1(2)   <---------ARR14(2)            <---------GLK1(1)          --------->ZAT18    --------->LBD16               --------->MYB52(1)                   -----          <---------ZAT18    ------>ZmHOX2a(1)       <---------LBD16--------->TOE2(2)           <----   tcgaacagtttgtgcgcatgttccgccattcctgagtatccataaagaagcattatacggataacgaaatcctccgactttatgtcatcgaacttcttct  4229300                                                          --------->ANAC58                                                   <---------MYB46(3)                                                   --------->LBD16                                                  <---------ANAC46                                                 <------NtERF2                        --------->ARR14(2)                                                 <---------LBD16<---------ZAT14       <---------ARR14(2)                                                <---------RAP2.3(1)                   <---------GLK1(2)                                                <---------ORA47(2)                   <------NtERF2                    <-------GAMYB              <---------RAP2.3(2)                  --------->LBD16                   <---------MYB46(3)     --------->LBD16 --------->ANAC46         --------->ETT(1)       <---------ARR11(3)               ----------->RAV1(2)--------->ZAT18         --------->LBD16       --------->ARR11(3)           <---------ANAC58      --------->ANAC58        <---------LBD16       --------->ARR14(2) --------->ARR11(3)   <---------RAP2.3(3)            <---------ANAC58       <---------ARR14(2) <---------ARR11(3)----------->HVH21   --------->ZAT14  --------->MYB52(1) ---->HSFB2a(2)    ------>ZmHOX2a(2)<---------ANAC58<------NtERF2             <---------ANAC58 -----HSFB2a(2)--------->ETT(2) <----------DOF2<---------DEAR3(1)            ------->TEIL   ggtattgaagaacttcgtcgatcgttgagaacttctttgcttccctgagacggcggataaacgcactgtagagtccatggacttgccggaaactctcaga  4229400       ------>ZmHOX2a(2)                                     <------NtERF2      <---------GLK1(1)                                     <-----------HVH21                      <-      <------ZmHOX2a(2)                                     <-----------TGA1                      ---      --------->GLK1(1)                                    <---------ANAC46                      ----     --------->ARR11(3)                                    --------->bZIP60(1)                   <---     --------->ARR14(2)                                    <---------ANAC58                      <---     <---------ARR11(3)                                    <---------bZIP60(1)                  <----     <---------AGP1                                        <---------ANAC58                     <----     <---------ARR14(2)                                   ---------->ID1                       <-----    <---------GLK1(2)                                --------->ATHB12     <---------WRKY18(1)  ------    <------ZmHOX2a(1)                              --------->GLK1(2)     --------->WRKY12      <-----  <---------TOE2(2)     <---------DAG2             --------->ARR14(2)   <---------WOX13(1)    <------  <---------TOE1(2)     <----------DOF2        <-----------GT1        --------->ATHB12 ------>ZmHOX2a(1)   ctcgcaggatctcttgaacttctctactttctgcgtcaatttcgaatttttagaatccttggcgtcattcgacgattgacctccgtctcctacagaggcg  4229500 --------MYB46(3) ------>ALFIN1 ----->At5g28300                                         ------>NtERF2          --------->GLK1(2) ---NtERF2                         <------MYB46(1)      <---------ZAT18        <---------ARR14(2) ----GAMYB                         <------MYB83         --------->LBD16        <---------ARR11(3) -----ORA47(2)            <------MYB83                 <---------ANAC58        --------->ARR14(2) -----MYB46(3)            <---------ANAC46 <----------DOF2                     <---------GLK1(2) ----DEAR3(1)             <------MYB46(1) <---------ANAC58                     --------->ARR11(3) --->ALFIN1  <-----------GT1   --------->ARR14(2)      <---------ANAC58 <-------GAMYB ----DREB2C(2)        <---------ARR14(2)  <---------ANAC58         --------->ALFIN1<----------DOF2  < ---ABI4(1) --------->AHL20(2) <---------ARR14(2)     <---------LBD16 <---------ANAC46     --------->GLK1(2)   gtggatgccttcaatttactagggaatttggtggatttggtttggcttctgggttttgcggacttagcagtggcgattgaagattctttgaagattccat  4229600                                                ----------->GT1                                                <---------MYB46(3)             --------->DEAR3(1)                --------->ALFIN1         <---------ZAT14                      ------->PIF5         --------->ZAT14                      <-------PIF5         --------->SPL7                      <---------At4g35610         ---------->DOF2 <---------ANAC58    <---------ZAT2                      <---------TOE2(3)       <---------ZAT14   <---------ANAC58  <-----------RAV1(2)         --------->ALFIN1             -       --------->ZAT14 ------>MYB83    <---------ANAC46              <---------ZAT6       XXXXXXXXXXX   ------>NtERF2       ------>MYB46(1) <---------ANAC58            <---------ANAC58      XXXXXXXXXXXX <------NtERF2         -------->P      <---------ANAC58            <---------ANAC46      XXXXXXXXXXXX --------->ATERF1(1) <---------MYB59  <-------TEIL        *TSS     <---------ANAC58      XXXXXXXXXXXX ---------ATERF1(1)------->TEIL  <---------CCA1(2)       <-----------HVH21       <---------TOE1(3)  <   ggaggcgactgtacagcgacgagcctaccttgctcatagcttcgtgcaggtggtgaaaatgtcagagttgagtgtgagggtttagggttttggacttaag  4229700              <---------ARR11(3)             <------MYB83             <------MYB46(1)        --------->LBD16                                                    --------->ANAC46        ------>NtERF2                                               --------->HSFB2a(2)      <---------LBD16                                      <-----------ARR10     ------>ZmHOX2a(1)                                    <---------MYB52(1)   <------NtERF2 -------->ZAT18                                         <---------ANAC58   --------->ANAC58 XXXXXXXXX>MIR319C                                      <---------ANAC46   --------->ANAC58 XXXXXXXX>MIR159C                                       <---------ANAC58  <---------ZAT14         --- XXXXXXXX>MIR319A/B            <----------ID1      <---------ANAC58 --------->LBD16<----------DOF2--- XXXXXXXX>MIR159B       --------->At5g28300        <---------ANAC58 ------>ZmHOX2a(1)           <---- ---------ZAT18        <---------ANAC46     --------->AHL20(2)    ----------->RAV1(2)          <-----   agtgctcctccggctaggtcttatgcagtgaatgcgaaaaacaaaataaaacagcgtgccgtttctactcctggactacgcagcgttttttgtgtctaaa  4229800                          ---------->DOF2                      <---------------AGL15                      --------------->AGL15                     ----------------->AGL1                     <-----------------AG                     ----------------->AGL2                     <-----------------AGL1             <---------MYB52(1)           <---------ANAC58  ----------->GT1           <---------ANAC58 ----------->GT1     <-------TEIL    <-----------------AGL2                       --------->ANAC58 ------>TOE2(3)      ----------------->AGL3                       --------->ANAC58 <---------ZAT14 ------>TOE1(3)     -------->P                       <----------DOF2 ----------->RAV1(1)   <---------ZAT6 -----ARR11(3)  <---------------AGL15             <-----------GT1 --------->ANAC46 --------->ZAT14 ----CCA1(2)<---------RAP2.6(3)               <----------DOF2   ---------->DOF2--------->ANAC46   tcttaaattcatgccgttctctaaccagaaaaggaaataagaaaatttcttttaactttgagaattgaaagcaacacaaacacactacagatagagatag  4229900               <---------ZAT18               <---------ZAT14               --------->ZAT14              --------->DEAR3(1)             --------->ANAC46            <---------At5g28300           <-----------GT1       <---------AHL20(2)      --------->AHL20(2)     <---------YAB1   --------->YAB1   -------->ATHB1   --------->ATHB51                              ----------->GT1   --------->AHL20(2)                      ---------->DOF2                                     <-----   <---------ICU4                       --------->AHL20(2)                                    -------   <--------HAHB4                   <---------ARR11(3)                                     --------->WOX13(1)  <---------ATHB12                --------->ANAC58                                         xxxxxxxxxx  <---------ATHB51                --------->ANAC46                <---------AHL20(2) <---------ANAC58  --------->ICU4<---------ALFIN1  --------->ANAC58                --------->AHL20(2) <---------ANAC58   ttcaattattaaatcaccgcactcgcagtttgcaacaagacattaaaaagagggaaacacagactaaattaaaaactagtcaataagccttgccaattaa  4230000                     <---------ANAC58                     <---------ANAC58                    <---------ZAT2                    <---------HSFC1(2)                                           <---------ANAC46                    --------->HSFC1(2)                                           <---------ANAC58                    --------->ZAT2                   --------->STY1(2)           <---------AtLEC2                    --------->HSFB2a(1)              --------->ZAT2      <-------TEIL         ---------->DOF2--------->ZAT18              <---------ZAT2   <---------ZAT2   <----------DOF2 ------->TEIL                      <---------STY1(2)--------->ZAT2 ------GT1    --------->CCA1(2)                   <---------ANAC58    --------->At4g35610 -->AHL20(2) <----------ID1                       <---------ANAC58    <---------At4g35610 <----------DOF2 xxxxxxxxxx>smallRNA(i2)<---------ZAT14       <----------DOF2--------->GLK1(2)   <---------ANAC58   ctactctttgggaaagagacgaagcttgcactgcaaatagtcattcgtctttgctagctcgacaatctcttcagcttcgtcttgcttggaccctttcacc  4230100               ------>ZmHOX2a(1)                                                             <------NtERF2             ----------->RAV1(2)                                                             ------>NtERF2         -------->P <------ZmHOX2a(1)                                                       ---------        ------->GAMYB                                              <---------At4g35610      ---------       --------->MYB46(3)                                    --------->AtLEC2               ---------       <---------MYB46(2)                                  <---------ANAC58                --------->DEAR3(1)       <------------MYB.PH3(2)                             <---------ANAC58<---------At4g35610     --       <---------MYB111(2)           --------->At4g35610<-----------GT1    --------->At4g35610 <-----   aatgcatcaactacctcctgcaggacagcctcatcgactagcagacgcttagcaaatatttccttgcagagctcataagcagactctaaatcgcccgcct  4230200  Previous    Next  AGI:  At3g13150.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66960.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4227747    to: 4229658    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g13160.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G55890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65949.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4229978    to: 4231293    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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