Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ------->GAMYB                                        --------->MYB46(3)                                        <---------MYB111(2)                                        <---------MYB52(2)             ------------------------>ANAC81 ---------->DOF2            <---------GLK1(1)           <---------MYB55(2)            --------->GLK1(1)     --------->ARR14(2)      --------->MYB52(1)          <---------ARR14(2)                       <---------LBD16   --------->ANAC46              --------->GLK1(1)                        ----------->RAV1(2)    ----   --------->ANAC58              <---------CCA1(2)  ------>ZmHOX2a(1)     <---------ANAC46===========   --------->ANAC58     <-------TEIL  ----------->RAV1(1)    ---------->DOF2              <------ZmHOX2a(2)   ttcaaacgaaacagaaatcagacagattcaaacacatatccaacaaacaaagtcctcaaaacaaaaatcgctgattacctggattccaagagatcgaaga  4064600              --------->HSFB2a(2)         <------NtERF2         --------->TGA2(2)        <-----------TGA1        ------>NtERF2                                                                              --        <-----------HVH21                                                                          --       <---------bZIP60(1)                                                                        <--       --------->bZIP60(1)                                                      ------>ZmHOX2a(2)----      --------->RAP2.3(1)                                                      <------ZmHOX2a(2) <---      <------NtERF2                                                           --------->ARR11(3) <---     <---------RAP2.3(1)              --------->YAB1                          <---------ARR11(3) <---     <---------ATERF1(1)              --------->ATHB12                       --------->GLK1(1)  <----    <---------DEAR3(1)         <---------SPL7                     --------->MYB52(1)         <------- <---------ARR14(2)            <-----------HVH21                <---------------AGL15       --------- ----->At4g35610 <------ZmHOX2a(1)   <---------YAB1--------->At4g35610       <---------GLK1(1) ------ =======================HOX2a_HOX2a <---------TOE1(2)          ----------------->AGL1     <---------ARR14(2)   gcagagacggcgtcatcgaggacttgttttcgtcgtcccatgatagcgatagaagctccatgtttgccaaactgagaagagatctcaaaaccgataccgg  4064700       --------->LBD16    --------->MYB52(1)   --------->DEAR3(1)   --------->AtMYB61             <---------TGA2(1)   <---------ALFIN1              <---------ETT(2)  --------->MYB46(3)             --------->ETT(2)  <---------MYB55(2)          ----------->HVH21 ------->MYB46(3)             ----------->TGA1 ---->ZmHOX2a(2)            <---------At4g35610 ----ZmHOX2a(2)         <---------WRKY18(1)                                             --------->ANAC58 ----->ARR14(2)        ----------->HVH21                                        --------->ANAC58 ------ARR14(2)        --------->WRKY12                                         --------->ANAC58 ------TCP16(1)      --------->TGA1a   <-----------RAV1(2)                  --------->ANAC58      === ------TCP20         --------->O2--------->bZIP60(1)                        --------->ANAC46   ------ -----ARR14(1)       <---------TGA1a<---------bZIP60(1)                     --------->ANAC58 -------- --LBD16             <---------O2<---------bZIP60(1)              <---------ALFIN1      --------->ANAC58 >MYB52(1)         <---------ALFIN1 --------->bZIP60(1)         ------->GAMYB   --------->ANAC46  <-- --->LBD16  <---------YAB1  --------->At4g35610                --------->MYB46(3)       --------->ANAC46   atccaccaccggtgatgagagccacttgacctctgacgacatcaggtttgaacggagagtccataaccacacactcacacacaagcaaactcgccaaaag  4064800                                    <---------ANAC58                                    --------->ANAC55(2)                                    <---------ANAC55(2)                      ---------->DOF2  <---------ARR14(2)                               <----------DOF2                      ========================bZIP_DOF                               ------>MYB83   <                <---------AHL20(2)  <---------ANAC46                                 ------>MYB46(1)<           --------->AHL20(1)       <---------ANAC58                               <---------MYB59 --           --------->AHL20(2)       --------->O2                                  --------->MYB46(3)-  <----------ID1--------->AHL20(1)  --------->TGA1a                              -------->P    ------ =============================================bZIP_DOF      <---------ANAC58  <---------MYB52(2)   -- ------------------>ANAC81      <-----------HVH21           <---------ANAC46 ------>MYB46(1) -------- -->DOF2   <---------AHL20(2)*TSS   <---------TGA1a         <---------ANAC58 ------>MYB83    <------- --------DOF2   --------->AHL20(2)  <---------O2      <---------YAB1       <---------MYB111(1) ------   ctttaagacaaaataaaataaaataaaaggagccagtcgcgtgtctgtctcttcttcttattacttggacctcttcacctactaaccaaactttacttta  4064900      ----------------->AGL3      <-----------------AGL3 -----------ARR10 ---------ARR11(3)                                --------->YAB1 ------->CCA1(1)                                  <-----------GT1 -------->ARR11(3)                   <---------YAB1------------>CBF                         <-------- ----->TBP                          --------->ARR11(3)                                  <------NtERF2 ------->RVE1(1)                    <---------ARR11(3)                                <---------WRKY38(1) ->TOE2(3)                     <-------TEIL    <---------ICU4                         <---------WRKY45 ---DOF2                  <XXXXXXXXXXXXXXXXXXXXMIR417                         <---------WOX13(1)   -- --->AHL20(2)           <-----------GT1       --------->ICU4  <-----------GT1<------------CBF    <---   aatatctccctatttttagtgccaaattacaaattcattatctttctactaattacaatatttgttaccatatgacttcgattgatagtcagcgttttcg  4065000                                                                <---------------AGL15                                                                <----------DOF2                                                                --------------->AGL15 --------->ANAC58                                                               <-----------------AGL3 --------->ANAC58                   ------->GAMYB                           <---------HSFC1(2)         --------->ANAC55(2)                <-----------GT1                            --------->HSFC1(2)         <---------ANAC55(2)             --------->YAB1                             ---------->DOF2               --------->ANAC46           <---------YAB1                             <---------ANAC55(2)       <---------YAB1           --------->AHL20(2)                         --------->ANAC58          --------->AHL20(2)           <---------AHL20(2)                         <---------YAB1            <---------AHL20(2)       ------>MYB46(1)                           *TSS --------->ANAC58         --------->YAB1       ------>MYB83--------->TOE2(3)            --------->AHL20(2)           --------->ICU4     <---------MYB59        <----------DOF2     <---------AHL20(2)      <---------ANAC58  <-----------GT1 --------->MYB46(3)            <---------AHL20(1)      <---------ANAC46 -ARR14(2)--------->TOE2(3) <---------DAG2      --------->AHL20(1)      <---------ANAC58 <---------TOE2(2) ------->MYB52(2) <----------ID1            <---------AHL20(2) ====================================== ------MYB52(1) <---------ICU4              --------->AHL20(2) <-----------------AGL2 --------->ANAC55(1)   ttatttaccaaatattaataaccacaaaaactttttttttttttttttaattaattacgaaagcttctttttttgggtgaatattaatacgtaagtttta  4065100                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                        <---------AHL20(1)                                                        --------->AHL20(1)                  <---------AHL20(2)                 --------->AHL20(2)            ----------->GT1                          <---------AHL20(2)            <------MYB83                             --------->AHL20(1)            <------MYB46(1)                --------->AHL20(2)           --------->MYB59                 <---------AHL20(2)        --------->ARR14(2)                --------->AHL20(2)        <---------ARR14(2)        ---------->DOF2   <---------AHL20(2)    <-----------------AGL1  <---------CCA1(1)       --------->AHL20(2)    <-----------------AGL2  <---------RVE1(1)   --------->AHL20(2)      --------->AHL20(2)          <    <-----------------AG   <---------ARR11(3)  --------->YAB1--------->AHL20(2)                   ---  <---------ARR14(2)       --------->ARR11(3)  --------->AHL20(2)      --------->AHL20(2)         ---  --------->ARR14(2)    ------>ZmHOX2a(1) <---------AHL20(2) <---------AHL20(2)---------->DOF2    <-- =====================MADS_MADS <---------AHL20(2)--------->YAB1 <-----------GT1--------->DAG2    <--   tctaaatccgaatttggtatataatcctagatattttaaaggaatttaataaaaataatttatttttttacaaataaaaaaaaaagggtatcgagttgga  4065200                       --------->ZAT2                   ------>NtERF2                   <------NtERF2                   --------->LBD16                                                          <--------                  --------->DEAR3(1)                                                        ---------                 <---------LBD16                                                         ---------->DOF2                ------>NtERF2                                                   --------->TOE2(3)               <---------RAP2.3(2)                                           --------->RVE1(1)     --------->REM1(1) <---------ZAT2                                        --------->CCA1(1) -----------GT1--------->ANAC46                                            --------->AHL20(2) ------>HSFC1(2)<---------RAP2.3(1)           <---------At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(i) ------>HSFB2a(1)<------NtERF2--------->GLK1(1)                 --------->AHL20(2)      --------->AtMYB61 -------HSFB2a(1)--------->ATERF1(1)      ----------->HVH21--------->HSFB2a(2)--------->ARR11(3) -------HSFC1(2)<---------RRTF1(1)<----------DOF2          <---------HSFB2a(2)<---------ARR11(3)   attttctacatctgtttgcgccgcgagctcgggtttctttctctctgaagcagaggctcttctagattaaaaaaaaaaaaaatctcaaaaccaaagcttc  4065300                        --------------->AGL15                        <---------------AGL15                  ------->TEIL                  --------->ARR14(2)                  <---------ARR14(2)        <-----------GT1----------------->AGL3       <-----------GT1 ----------------->AGL2        --------->ANAC46 <----------DOF2  <---------ARR11(1)                 --------->ANAC58 -HSFC1(2)       <---------ARR14(1)                  --------->ANAC58                     ----------- >HSFC1(2)       <---------CCA1(2)          ------>ZmHOX2a(2)      --------->ICU4  --------->CCA1(2)-   ttcctttttttaccaattcgtatctcccatttttagttttcttcgatctcaaatcacaccatcttagtaagaatgaagtgaagagatttgagaagaaaaa  4065400                                                         --------->CCA1(2)                  <--------                                                        --------->ARR11(1)               ----------->TGA1                                                        --------->ARR11(3)               ----------->HVH21                                                        <---------ARR14(2)              <-----------HVH21                              <------ZmHOX2a(1)       <---------TOE2(3)                <---------ANAC58                     <---------GLK1(2)      --------->At4g35610                 --------->ICU4 >GT1       <-----------GT1 <---------TOE2(3)         <---------TOE1(3) <-----------GT1<---------ANAC58 -------->ZAT6   <---------MYB52(1)         <---------At4g35610        <---------YAB1<---------ANAC46   aaacactaatcttgttcccgttcgattcttgaggaaaacaaatttcagctagatttaagatttggaatcgaatattactgtaatgttttgggtgacggga  4065500  Previous    Next  AGI:  At3g12800.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. Identical to Peroxisomal 2,4-dienoyl-CoA reductase [Arabidopsis Thaliana] (GB:Q9LTV6;GB:Q67Y37;GB:Q680G7); similar to D2,D4-dienoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G07640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64912.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 4063330    to: 4064829    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12810.1    Description:  PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase. similar to transcriptional activator, putative [Arabidopsis thaliana] (TAIR:AT3G57300.1); similar to SWR1 complex protein, SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp. patens] (GB:EDQ72602.1); similar to hypothetical protein OsJ_007722 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24239.1); similar to putative photoperiod independent early flowering1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07677.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain HAS subgroup (InterPro:IPR013999); contains I Range:  from: 4065049    to: 4074085    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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