Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                             ----------->GT1    <----                                                                       --------->ZAT2          <-----                                                                       <---------ZAT2        <-------                                                                       --------->At4g35610   --------             --------->AHL20(2)                                     <---------ZAT2          <--------             <---------AHL20(2)                                     --------->ZAT2       --------->ZAT2            --------->AHL20(2)                                      --------->At4g35610  <------NtERF2    <---------YAB1                                               ------>ZmHOX2a(1)       --------->At4g35610    --------->ICU4                                --------->ICU4--------->TOE2(3)        <---------At4g35610  --------->YAB1 --------->YAB1  <---------ARR14(2)    <----------ID1 ----------->RAV1(1)<---------ZAT2 <------ZmHOX2a(2)               --------->ARR14(2)   <------ZmHOX2a(1)<---------At4g35610  --------- ---------ARR11(3)           --------->DAG2       <---------MYB52(1)<---------At4g35610 ------>NtERF2 -------->ARR11(3)          ---------->DOF2  --------->ANAC58--------->ARR14(2)        --------->ATERF1(2) --------At4g35610      <----------ID1       --------->ANAC58<---------ARR14(2)        <---------ATERF1(2)   cagatcatgatcaaattaatgagaaaacgaaaaaggaacctgttctgaagccattaggagacaaatcctcagcagcagccagaaaattgccagcagcggc  4064400      <---------GLK1(2)      --------->YAB1 ------>DOF5.7(2)                         <---------HSFB2a(2) -----ANAC46                              --------->HSFB2a(2) -NtERF2 --------->ARR11(3)           <---------ANAC58 --DEAR3(1)                     --------->DAG2 ->DEAR3(1)                    ---------->DOF2                    <---------ANAC58------>MYB83 -At4g35610            ---------->DOF2<---------ANAC58            <---------ANAC58------>MYB46(1) >At4g35610         <---------MYB59   <---------ANAC46  <---------CCA1(2)------->TEIL   gttaacaagaatatcaagtttaccaaaatgctgaaaagttgcttccacaactcttctcgcatcttcttgcttacgaacatcaccttccaatccaatagcc  4064500                                         ------->GAMYB                                        <---------MYB55(2)                                        <---------MYB52(2)                                        --------->MYB46(3)             ------------------------>ANAC81 ---------->DOF2            <---------GLK1(1)           <---------MYB111(2)            --------->GLK1(1)     --------->ARR14(2)      --------->MYB52(1)          <---------ARR14(2)                       <---------LBD16   --------->ANAC58              --------->GLK1(1)                        <---------ANAC46===========   --------->ANAC46              <---------CCA1(2)  ------>ZmHOX2a(1)     ----------->RAV1(2)    ----   --------->ANAC58     <-------TEIL  ----------->RAV1(1)    ---------->DOF2              <------ZmHOX2a(2)   ttcaaacgaaacagaaatcagacagattcaaacacatatccaacaaacaaagtcctcaaaacaaaaatcgctgattacctggattccaagagatcgaaga  4064600              --------->HSFB2a(2)         --------->TGA2(2)         <------NtERF2        <-----------TGA1        ------>NtERF2                                                                              --        <-----------HVH21                                                                          --       --------->bZIP60(1)                                                                        <--       <---------bZIP60(1)                                                      ------>ZmHOX2a(2)----      --------->RAP2.3(1)                                                      <------ZmHOX2a(2) <---      <------NtERF2                                                           <---------ARR11(3) <---     <---------ATERF1(1)              --------->ATHB12                        --------->ARR11(3) <---     <---------RAP2.3(1)              --------->YAB1                         <---------GLK1(1)  <----    <---------DEAR3(1)         <-----------HVH21                  --------->MYB52(1)         <------- <---------ARR14(2)            <---------SPL7                   <---------------AGL15       --------- =======================HOX2a_HOX2a  <---------YAB1--------->At4g35610       --------->GLK1(1) ------ ----->At4g35610 <------ZmHOX2a(1)  <---------TOE1(2)          ----------------->AGL1     <---------ARR14(2)   gcagagacggcgtcatcgaggacttgttttcgtcgtcccatgatagcgatagaagctccatgtttgccaaactgagaagagatctcaaaaccgataccgg  4064700       --------->LBD16    --------->MYB52(1)   --------->DEAR3(1)   <---------ALFIN1              <---------TGA2(1)   --------->AtMYB61             <---------ETT(2)  <---------MYB55(2)             --------->bZIP60(1)  --------->MYB46(3)          ----------->HVH21 ------->MYB46(3)             ----------->TGA1 ---->ZmHOX2a(2)            <---------At4g35610 ----ZmHOX2a(2)         <---------WRKY18(1)                                             --------->ANAC58 ----->ARR14(2)        ----------->HVH21                                        --------->ANAC58 ------TCP20           --------->WRKY12                                         --------->ANAC58 ------ARR14(2)      <---------TGA1a   <-----------RAV1(2)                  --------->ANAC58      <-- ------TCP16(1)      <---------O2<---------bZIP60(1)                        --------->ANAC58   ------ -----ARR14(1)       --------->TGA1a--------->bZIP60(1)                     --------->ANAC46 -------- --LBD16             --------->O2--------->ETT(2)                 <---------ALFIN1      --------->ANAC46 >MYB52(1)         <---------ALFIN1 <---------bZIP60(1)         ------->GAMYB   --------->ANAC46  === --->LBD16  <---------YAB1  --------->At4g35610                --------->MYB46(3)       --------->ANAC58   atccaccaccggtgatgagagccacttgacctctgacgacatcaggtttgaacggagagtccataaccacacactcacacacaagcaaactcgccaaaag  4064800                                    --------->TGA1a                                    <---------TGA1a                                    <---------O2                      ========================bZIP_DOF                                  <----------DOF2                      ---------->DOF2  <---------ARR14(2)                            ------>MYB83   <                --------->AHL20(2)  <---------ANAC55(2)                              ------>MYB46(1)<           --------->AHL20(1)       <---------ANAC46                               <---------MYB59 --           <---------AHL20(2)       --------->ANAC55(2)                           --------->MYB46(3)-  <----------ID1--------->AHL20(1)  <---------ANAC58                             -------->P    ------ --------DOF2   <---------AHL20(2)  <---------ANAC58        <---------ANAC58  <---------MYB52(2)   -- ------------------>ANAC81      <-----------HVH21           <---------ANAC46 ------>MYB46(1) <------- -->DOF2   --------->AHL20(2)*TSS   --------->O2            <---------ANAC58 ------>MYB83    -------- =============================================bZIP_DOF<---------YAB1       <---------MYB111(1) ------   ctttaagacaaaataaaataaaataaaaggagccagtcgcgtgtctgtctcttcttcttattacttggacctcttcacctactaaccaaactttacttta  4064900      ----------------->AGL3      <-----------------AGL3 -----------ARR10 ---------ARR11(3)                                <-----------GT1 ------->CCA1(1)                                  --------->YAB1 -------->ARR11(3)                   <---------YAB1------------>CBF                         <-------- --->AHL20(2)                       --------->ARR11(3)                                  <------NtERF2 ------->RVE1(1)                    <---------ARR11(3)                                <---------WRKY38(1) ---DOF2                       <-------TEIL    <---------ICU4                         <---------WRKY45 ->TOE2(3)                <XXXXXXXXXXXXXXXXXXXXMIR417                         <---------WOX13(1)   -- ----->TBP              <-----------GT1       --------->ICU4  <-----------GT1<------------CBF    <---   aatatctccctatttttagtgccaaattacaaattcattatctttctactaattacaatatttgttaccatatgacttcgattgatagtcagcgttttcg  4065000                                                                <---------------AGL15                                                                <----------DOF2                                                                --------------->AGL15 --------->ANAC55(1)                                                               ======================================                   ------->GAMYB                           --------->HSFC1(2)         <---------ANAC55(2)                <-----------GT1                            <---------HSFC1(2)         --------->ANAC55(2)             --------->YAB1                             ---------->DOF2               --------->ANAC58           <---------AHL20(2)                         <---------YAB1            <---------YAB1           <---------YAB1                             --------->ANAC58          --------->AHL20(2)           --------->AHL20(2)                         <---------ANAC55(2)       <---------AHL20(2)       ------>MYB46(1)                           *TSS --------->ANAC58         --------->YAB1       ------>MYB83--------->TOE2(3)            --------->AHL20(1)           --------->ICU4     <---------MYB59        <---------DAG2      --------->AHL20(2)      <---------ANAC46  <-----------GT1 --------->MYB46(3)            <---------AHL20(2)      <---------ANAC58 -ARR14(2)--------->TOE2(3) <----------DOF2     <---------AHL20(1)      <---------ANAC58 <---------TOE2(2) ------->MYB52(2) <----------ID1            <---------AHL20(2) <-----------------AGL2 --------->ANAC46 ------MYB52(1) <---------ICU4              --------->AHL20(2) <-----------------AGL3 --------->ANAC58   ttatttaccaaatattaataaccacaaaaactttttttttttttttttaattaattacgaaagcttctttttttgggtgaatattaatacgtaagtttta  4065100                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------AHL20(2)                                                        --------->AHL20(1)                                                        <---------AHL20(1)                                                        --------->AHL20(2)                  <---------AHL20(2)                 <---------AHL20(2)            <------MYB46(1)                          --------->AHL20(2)            <------MYB83                             --------->AHL20(1)            ----------->GT1                <---------AHL20(2)           --------->MYB59                 --------->AHL20(2)        --------->ARR14(2)                <---------AHL20(2)        <---------ARR14(2)        ---------->DOF2   <---------AHL20(2)    <-----------------AGL2  <---------CCA1(1)       --------->AHL20(2)    <-----------------AG    <---------RVE1(1)   --------->AHL20(2)      --------->AHL20(2)          <    <-----------------AGL1 --------->ARR11(3)  --------->YAB1<---------AHL20(2)                   <--  <---------ARR14(2)       <---------ARR11(3)  --------->AHL20(2)      --------->AHL20(2)         ---  --------->ARR14(2)    ------>ZmHOX2a(1) --------->AHL20(2) --------->AHL20(2)---------->DOF2    <-- =====================MADS_MADS <---------AHL20(2)--------->YAB1 <-----------GT1--------->DAG2    ---   tctaaatccgaatttggtatataatcctagatattttaaaggaatttaataaaaataatttatttttttacaaataaaaaaaaaagggtatcgagttgga  4065200                       --------->ZAT2                   <------NtERF2                   ------>NtERF2                   --------->LBD16                                                          ---------                  --------->DEAR3(1)                                                        <--------                 <---------LBD16                                                         ---------->DOF2                ------>NtERF2                                                   --------->TOE2(3)               <---------RAP2.3(2)                                           --------->CCA1(1)     --------->REM1(1) <---------ZAT2                                        --------->RVE1(1) -----------GT1--------->ANAC46                                            --------->AHL20(2) -------HSFC1(2)<---------RRTF1(1)<----------DOF2               --------->AHL20(2)      --------->AtMYB61 ------>HSFC1(2)<---------RAP2.3(1)           <---------At4g35610    <xxxxxxxxxxxxxxxxsmallRNA(i) -------HSFB2a(1)<------NtERF2--------->GLK1(1)            <---------HSFB2a(2)--------->ARR11(3) ------>HSFB2a(1)--------->ATERF1(1)      ----------->HVH21--------->HSFB2a(2)<---------ARR11(3)   attttctacatctgtttgcgccgcgagctcgggtttctttctctctgaagcagaggctcttctagattaaaaaaaaaaaaaatctcaaaaccaaagcttc  4065300  Previous    Next  AGI:  At3g12800.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. Identical to Peroxisomal 2,4-dienoyl-CoA reductase [Arabidopsis Thaliana] (GB:Q9LTV6;GB:Q67Y37;GB:Q680G7); similar to D2,D4-dienoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G07640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64912.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 4063330    to: 4064829    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12810.1    Description:  PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase. similar to transcriptional activator, putative [Arabidopsis thaliana] (TAIR:AT3G57300.1); similar to SWR1 complex protein, SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp. patens] (GB:EDQ72602.1); similar to hypothetical protein OsJ_007722 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24239.1); similar to putative photoperiod independent early flowering1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07677.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain HAS subgroup (InterPro:IPR013999); contains I Range:  from: 4065049    to: 4074085    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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