Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                              ------>ZmHOX2a(2)                                                                                             <-------                                                                                             --------                                                                                             <------ZmHOX2a(2)                                                                                            <--------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                           <---------CCA1(2)                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                          -----------          <---------ZAT6                               --------->ANAC46                <-----------HVH21     --------->TOE2(3)                                 --------->ANAC58               <---------bZIP60(1)     <-----------HVH21                                 --------->ANAC58               --------->bZIP60(1)     <-----------TGA1                           <---------At4g35610              --------->ZAT2  ---- --->GLK1(2)            <---------YAB1       <------ZmHOX2a(2)                   <---------ZAT2  ---- -->ARR14(2)          --------->YAB1<-------TEIL--------->At4g35610              <---------At4g35610 ---GLK1(2)--------->YAB1--------->YAB1     --------->ARR11(3)                   --------->At4g35610 ---ARR14(2)      <---------YAB1 ----------->GT1--------->ZAT2                   ----------->RAV1(2)   ctggtatcgtcagtgatagtctgattatcatcgagaggtacattgagatcagctctcacgaaaaccttcttccccttcaaatcagctgaggtcagatctc  4062900 --->NtERF2 ------->HVH21 --GLK1(1)                                                              --------->REM1(2) ->GLK1(1)                                                             --------->ALFIN1 -ARR14(2)                                     ------->TEIL           <-------MYC3 -AGP1                                       --------->MYB46(3)       ------->MYC3 >AGP1                                      <---------ALFIN1         <---------ANAC46      --------->GLK1(2) >ARR14(3)                                  --------->ANAC58         <---------O2          <---------ARR14(2) >ARR14(2)                     --------->At4g35610                   --------->O2         --------->GLK1(1) >ARR11(3)                     <---------At4g35610                  <-----------------------TaNAC69(2) -ARR11(3)            --------->AtMYB61     --------->ANAC46    <xxxxxxxxxxxxxxxxsmallRNA(le3)     -- >ARR10   --------->ANAC46  ------>ZmHOX2a(1)<---------MYB55(2) --------->ANAC58      <---------ANAC46 ----->ANAC46        --------->MYB46(3)     --------->ANAC58    --------->ANAC58     <---------LBD16 ----->DEAR3(1)    <-----------GT1        <---------ALFIN1      --------->ANAC46   ----------->HVH21   cgacgctcttcttcgccatagaaaccactcctctgcttcccttcccacgcaccgattcaactttggaagcaacgtggagagagaaacgacgggaatctag  4063000                                                                       <---------ARR14(2)                                                                      --------->GLK1(1)                                                                      <---------GLK1(1)                                                                 <---------ANAC58                                                                 <---------ANAC58                <---                                                                --------->ZAT18                 <----                                                               --------->ALFIN1                <-----                                                              <-------MYC3                     ------                                                              <-------PIF4             ----------->RAV1(1)                                                              ------->PIF4             <xxxxxxxxxxxxx                                                              ------->MYC3             --------->MYB52(1)                                                              <-------MYC2          --------->ANAC58                                                              ------->MYC2     <------NtERF2   <-----                                                              ------->MYC4   <---------DEAR3(1)------                                                              <-------MYC4 ------>NtERF2      <------NtERF2                                                              ------->PIF5 --------->LBD16    <------                                                              <-------PIF5<---------RAP2.6(2)<-------                          <---------ARR14(2)                 =====================================MYC_MYB    <------NtERF2         --------->ARR14(2)                 <---------TGA1a <---------ANAC46------>NtERF2   --------->LBD16      --------->LBD16                      --------->TGA1a<---------LBD16 ---------  <---------ANAC58     --------->ANAC58                      ======================================bZIP_DOF  <---------ANAC46     --------->ANAC58                     ------------>OsbHLH66   --------->ANAC58  <---------ANAC58    <---------LBD16                       <-------TEIL <---------LBD16---------->DOF2 <---------LBD16      --------->LBD16                      <------------OsbHLH66  <------ZmHOX2a(1)<- ------->ALFIN1  <------ZmHOX2a(1) --------->ALFIN1       <------NtERF2--------->ARR14(2) ------->GAMYB   agtggcggagaagcctagaggacgcgcggaaacagaggtagagggaattggcagaagggaggcacgtgcgcgagttccggcggaggaagcaacagcgccg  4063100                                      --------->ANAC58                                      --------->ANAC58                                 <------NtERF2                                 --------->At4g35610                                 <---------LBD16        <------ZmHOX2a(1)      <---------DEAR3(1) ------MYB52(1)                <-----------RAV1(2) -----DEAR3(2)                <------NtERF2 ------->MYC3 ----ATERF1(2)                <---------At4g35610     --------->YAB1 --->DEAR3(1)               <---------RAP2.6(2)  <------ZmHOX2a(2)---------->DOF2 xxxsmallRNA(s)       <---------ARR14(2)    <-------MYC3     ----------->GT1 ----DEAR3(1)         --------->ARR14(2)   <---------O2     ----------->GT1 --->ATERF1(2)       <------NtERF2   --------->SPL7--------->WOX13(1)        --------->At4g35610 ---LBD16----------->GT1   <---------LBD16 --------->O2---------->DOF2     <------ZmHOX2a(1) --RAP2.3(1)      <---------LBD16<---------At4g35610 <---------ATHB12 ------------------------>ANAC81 >DEAR3(1)      --------->DAG2--------->ATERF1(1)=================================HOX2a_HOX2a --------ZAT18---------->DOF2<---------RAP2.3(1)------------------------>ANAC81   gtggacttaaggagtgaaaaggcggaacttgcggcagcggaagccatgtggatcaatcaaagaagataaaaagatgaggagatgagaaacagagagagtg  4063200                              <---------ARR11(3)                              --------->ARR11(3)                   <-----------GT1               <---------AHL20(2)               --------->ATHB12                                         ----------->GT1   <----------DOF2              --------->AHL20(2)                             --------->ZAT6   ---------->DOF2              <---------AHL20(2) <---------AHL20(2)         <---------YAB1 <-------TEIL<---------ARR11(3)          <---------YAB1    <---------TOE2(3)     <-----------GT1  <---------YAB1      --------->ARR11(3)   actcacaatgttcttatttattagccatttgagattttatgagtttggaatatttctctcttatcactgatgagaggttcaaaagcgattatctttttga  4063300                                   --------->ANAC58                             <-----------GT1                                   --------->ANAC58                        --------->TOE1(3)                       <----------DOF2   <---------DAG2                    --------->YAB1                   <-----------------AG  <----------DOF2                 <---------ARR11(3)             *TSS<-----------GT1 ---------->DOF2        --------->ARR11(3) --------->TOE2(3)        <---------MYB52(1)   ---------->DOF2<------------CBF      ------>ZmHOX2a(2)              ----   tcatatattcgttactgttttgcctcttttgcaaagaaagctactttattgtgcataagatagtttgatctacataatcttaataccattttctcagtct  4063400                                                                                           -------->P                                                                                           ------>MYB46(1)                                                                                <--------P ------>MYB83                                                                               <-------GAMYB                                                                              <---------MYB46(3)                                                                            <---------ANAC58                                                                            <---------ANAC58 ========                                                                            <---------ANAC46 ------->GAMYB                                                --------->ARR11(3)         <---------ZAT2  ==========                                                <---------ARR11(3)     <---------At4g35610-----------                                   --------->ZAT18                     --------->ZAT2     --------->MYB52(1)           <---------ATHB12        <---------ZAT14                ------>ZmHOX2a(2)      --------->AtMYB61       --------->AHL20(2)          --------->ZAT14              --------->ARR11(3)<------MYB46(1)       ------------>CBF    <-----------GT1     <---------GLK1(1)<---------ARR11(3)<------MYB83  <---- -------->CBF   --------->AtMYB61  <---------ZAT18            <---------ATHB12--------->MYB55(2)<----   ccaatgtaattcaataaaccaaaacattttttcaatgtgcacttatttgatatctgaaattcaaatgatctacagcttgctggttgggagaccaacaggc  4063500                        =======================bZIP_DOF                        --------->TGA1a                        <---------TGA1a                        --------->ANAC58                        --------->ANAC58                        =======================bZIP_DOF                     <---------SPL7                     --------->ZAT14   <---------At5g28300                    --------->DEAR3(1)<---------ALFIN1                  --------->ANAC58      <xxxxxxxxxxxxxxxxsmallRNA(se3)<----------DOF2         <---------ANAC46                --------- =================================MYC_MYB                   <---------ANAC58       ------>ZmHOX2a(1) =================================MYC_MYB      <----------DOF2          --------->ANAC46   --------->MYB46(3) >RAV1(1)          --------->ANAC46<---------ANAC58         <---------ANAC58 <---------ALFIN1 -----ANAC58     ------------------>SPL14  <-----------------AG         --------->ANAC58  -------->P -----ANAC58     <---------ALFIN1  <---------ANAC58      --------->ALFIN1  ----------->RAV1(1)   ttggccctagacctcttctccaccgcacgagagagttgcttcaccgcttctttaggcaagtggcgaggtttgctaagccacagtcctccatctaccacca  4063600                                                --------->REM1(1)                                                --------->bZIP60(1)                                                <---------TGA2(1)                                                <---------bZIP60(1)                                               <-------TEIL                                              <-----------GT1                                           ----------->GT1                  <-----------GT1        --------->ICU4       <---------At4g35610               <---------ATHB12                                  <---------       <------NtERF2                --------->ANAC46                                       <---------DAG2       --------->At4g35610          --------->ANAC58                                   <---------ZAT14     <---------ZAT18                --------->ANAC58            ------->TEIL           <---------ZAT18     --------->ZAT18               --------->WOX13(1)   <-----------GT1                --------->ZAT18 >AtMYB61        <-----------GT1 <---------ATHB12    --------->At4g35610        ---------->DOF2   <--   ttgttagtccgctcacatatttccctgttaaacaaatcaagcaatgagttacatcatctaaccatgtatatatgttttatattaaagagtgtgctttatt  4063700                                 <---------ZAT14                                 <---------ZAT18                                 --------->ZAT18                                 --------->ZAT14                                --------->ALFIN1                              <---------ANAC58                              <---------ANAC58                    ----------->RAV1(2)                    <---------ZAT2                    --------->ZAT2  ------>NtERF2                    <---------At4g35610                --------->ZAT14    <---------At4g35610 <---------AtMYB61            --------->O2            <---------ANAC46    --------->At4g35610 <---------TOE2(3)          <---------ALFIN1   ---------->DOF2 -DOF2              --------->At4g35610       --------->GLK1(1)  <---------DAG2 ---------GT1<---------GLK1(2)<---------ANAC46<---------GLK1(1)  <----------DOF2  ------->TEIL   taactcagcataccagaatcacagctgaggtagagtgcagccatagcgatatcccacttctctccaactttataaagaggcatgtactctctggttttgt  4063800  Previous    Next  AGI:  At3g12780.1    Description:  PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase. similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81990.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96267.1); contains InterPro domain Phosphoglycerate kinase, conserved site; (InterPro:IPR015911); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576); contains InterPro domain Phosph Range:  from: 4060978    to: 4063313    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12800.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. Identical to Peroxisomal 2,4-dienoyl-CoA reductase [Arabidopsis Thaliana] (GB:Q9LTV6;GB:Q67Y37;GB:Q680G7); similar to D2,D4-dienoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G07640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64912.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 4063330    to: 4064829    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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