Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                   <-                                                         --------->AHL20(2)                        --                                                      ------>MYB83                                 --                                                      ------>MYB46(1)                             <--                                                    <---------MYB59                               <--                                                    <---------MYB111(1)                          <---                      ------>ZmHOX2a(2)             <---------MYB46(2)                     <---------YAB1            =================HOX2a_HOX2a      <---------------AtSPL8                     <---------AHL20(2)            ------>ZmHOX2a(1)                 --------------->AtSPL8                 <---------DAG2--     <---------AHL20(2)              <---------AHL20(2)  <---------AHL20(2)          <----------DOF2< -DOF2     --------->TOE2(3)   --------->AHL20(2) ------->TEIL               --------->ARR11(3) <----   tttgtttttaattcctaaaattgatctaatagattatatataaacatatatgtacctaattaatctctggtatatgtaagacattcactttttatttttg  4054300                                               --------->ANAC55(2)                                               <---------ANAC55(2)                                             <-----------GT1                                          --------->YAB1                                          <---------ICU4       <---------AHL20(2)                 <--------ATHB1      --------->AHL20(2)                  -------->HAHB4      <---------AHL20(2)                  <--------HAHB4 ---------->GT1                           --------->ATHB51 ------MYB83                             <---------ATHB51 --------MYB46(3)                        --------->ICU4   <---------ICU4 ------->MYB46(2)                     <---------AHL20(2)  <-----------GT1 ------->MYB111(2)                   --------->AHL20(2)<---------ICU4 -------MYB55(1)               <-----------GT1 <---------YAB1 ------P                 <---------YAB1--------->YAB1 <---------YAB1                              <-- ----GAMYB            <---------ARR14(2) <---------YAB1--------->YAB1                       <-------- ------->MYB111(1)    --------->ARR14(2) --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)---- ------MYB46(1)  <---------ZAT14<---------TOE1(3)   --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) -----MYB46(3)   --------->ZAT14<---------TOE2(3)  <---------ATHB12---------->DOF2       ----------->GT1   gttggtaattttatatcgctgcagtatatgatttaacgatttaataattacgaatcataataactatatcaaagcgataccaaaaacgatatagttaaat  4054400       --------->ATHB51                                <---------At5g28300       <---------ICU4                                --------->WRKY38(1)       -------->ATHB1                       <---------AHL20(2)      <---------YAB1                  <---------ARR11(3)              --------->ANAC46      --------->ICU4                  --------->ARR11(3)   <---------MYB52(1) <-----------GT1             --------------->AGL15   --------->WRKY12 --------->LBD16 -------AHL20(2)             <---------------AGL15  --------->DOF5.7(2)--------->LBD16 -AHL20(2)                <-----------GT1  --------->AHL20(2)        <---------LBD16 ----->AHL20(2)      <---------AHL20(2)    <---------AHL20(2)  <-----------GT1   <-------TEIL   tttataccattattgtctactattttttttaccatttcaagataattttatatcgtttaccgttttttcttcccgcgaaaaaattcataccacattctag  4054500                                                                   <---------CCA1(2)                                                                 --------->AHL20(2)                                                       --------->DAG2     --------->At4g35610                                                       <---------TOE1(3)  <---------At4g35610                      <---------GLK1(2)                <---------------AtSPL8    <-----------GT1                 ------->TEIL              <---------AHL20(2)    <---------AHL20(2)--------->ZAT6          <---------AHL20(2)            <---------ARR11(3) <-------TEIL   <---------ZAT2          --------->AHL20(2)           <------ZmHOX2a(1)----------->GT1   --------->ZAT2        -----         --------->YAB1             --------->YAB1     --------------->AtSPL8  <---------WOX13(1)  --         --------->AHL20(2)        <---------ATHB12    <---------TOE2(3)<-----------RAV1(2) ---------   ctccaattgaattaaaatgtatcaaattctctatcaaatcaggattttataaactataaggtacaatttatatcccagctgattaactctagtccaaagc  4054600                  --------->LBD16                                                  --------->LBD16                <---------LBD16                                                 --------->MYB52(1)             --------->ZAT14                                                   <---------ARR14(2)             --------->ARR14(2)                                               <---------SPL7             <---------ZAT14                                                 <---------ANAC58   <----        --------->ZAT14      <---------LBD16                                 <---------ANAC58   ----- ---->TOE1(3)<---------ARR14(2)--------->LBD16                     --------->MYB52(1)   --------->ARR14(2) -------->DOF2 --------->MYB52(1) <-------TEIL                    --------->MYB52(1)    <---------ARR14(2) ->DOF2 <---------ZAT14    <-----------GT1               <-----------GT1--------->ARR14(2)   <-------   ttaaagacagaacagtataccggactaaatttccggtccattttgtatagggagacattttactaaacaaaccggtttggcgaaccggagtatttgcata  4054700                       --------->DAG2                                        ---------->DOF2        --------->TOE2(3)                                                   <------ZmHOX2a(1) -------     ----------->RAV1(1)----------->GT1                            <------NtERF2             -------- -----ARR14(2)        ---------->DOF2                            <---------ANAC46           <-------- ---->MYB52(1)   ---------->DOF2              *TSS               <---------DEAR3(1)    --------->ANAC58 --AtLEC2  --------->YAB1       ----------->GT1 <---------AtLEC2<---------LBD16        --------->ANAC58   actgaaacaacatttataagaaagaaaagtagaaatgaaaaaaacattttgcatagaagagagagaggcggagagagaggaaagtgaagaagcaatcgtg  4054800                                                  <---------ANAC58                                            <---------DAG2                                            <----------DOF2                                           <---------DAG2                      <-----------HVH21 <---------ALFIN1 -->TOE1(2)      ----------->RAV1(2) ----------->HVH21          <-----------HVH21 ->YAB1     --------->HSFB2a(1)    ------>ZmHOX2a(1)  --------->HSFB2a(2) -ATHB12   <-----------ARR10  ------>ZmHOX2a(1)   <---------ANAC58               ----------->GT1   agagactctctcgagtcttccctgagtcactcctctcctctcacacctttttgcttcgcgattaagagtcagagagagagagatagtaaacatcgaacgt  4054900                                                          <<<<<<<<<TBF1                                                     --------->ARR14(2)                                                     <---------GLK1(2)       <----------DOF2                                                     <---------ARR14(2)      <---------DAG2                                              <---------ANAC58          --------->ANAC58          ---                                              <---------ANAC58          --------->ANAC58     <-------                              <---------TOE2(3)   --------->HSFB2a(2)  --------->SPL7     ------>ZmHOX2a(1)        <---------At4g35610   <---------TOE1(3)   <---------HSFB2a(2)<---------SPL7 ------>ZmHOX2a(1)   cttccatttcatcttccttcgattaccttgttagggttttgtattttggcttctggattcttcttcactatggtacgcgctttctccttctcctcctttt  4055000                                      <---------ANAC46                                      <---------ANAC58                              ------>ZmHOX2a(1)                           <------ZmHOX2a(2)                          <---------ARR14(2)                          --------->ARR14(2)                          <---------GLK1(2)                          <-----------ARR10         <---------YAB1                        --------->LBD16        <----------DOF2                       <---------ANAC58        <---------DAG2                       <---------ANAC58       <---------ANAC58                <---------TOE2(3)     <---------RAP2.6(2)    ---------->ID1     <---------ANAC46 <------NtERF2   <-----------GT1    <---------LBD16 <---------ANAC58<---------GLK1(2) ------->ID1 <----------DOF2------>ZmHOX2a(2) <---------ANAC58 ---DOF2   <------------------------ANAC81<----------DOF2         <-------TEIL                      -   gtttttttccctctgctttaggtttgcggatcctcttatggcgtctttgcttttctgattcttagagtttcattttaagtcgagtagaaaacgaacaagg  4055100                                                                                           ----------                                                                                         ------->GAMYB                                                                                       -------->P                                 <----------DOF2   <------MYB83                       --------->MYB52(1)                              <---------ARR11(3)   <------MYB46(1)                 --------->ANAC58                           <---------DDF1        <---------WOX13(1)                --------->ANAC58                          <---------ETT(2)     --------->ATHB12                  --------->At4g35610        <-----------GT1   --------->ETT(2)    <---------YAB1                  --------->At4g35610 ------>ZmHOX2a(1)    <---------WOX13(1)  --------->YAB1                      <---------At4g35610 -------->TOE2(3)   --------->ATHB12   --------->WOX13(1)           --------->YAB1 --------->ANAC46   ctccttaattttgcgatttcagtgattgtcgacatctttgttaatcatatgattggttttgttttctgtagcataagttgagcagaagcaaccgtgacaa  4055200  Previous    Next  AGI:  At3g12760.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15860.1); similar to SM10 [Nicotiana tabacum] (GB:ABI49160.1); contains InterPro domain Protein of unknown function DUF298 (InterPro:IPR005176); contains InterPro domain UBA-like (InterPro:IPR009060); contains InterPro domain Defective in cullin neddylation (InterPro:IPR014764); contains InterPro domain Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449) Range:  from: 4054746    to: 4056987    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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