Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ZAT2    --------->KAN4(1)      ------>NtERF2----------->RAV1(2)      <---------AHL20(2)                --    <---------KAN4(1)   <---------At4g35610                      --------->AHL20(2)                --   <---------KAN4(2)    ------>ZmHOX2a(1)         ------->TEIL--------->WOX13(1)                   -- <------ZmHOX2a(1)      --------->At4g35610    <---------YAB1--------->AHL20(2)            --------->ANAC58 ------->MYB59  <---------ZAT2     --------->ANAC46         <---------ATHB12               --------->ANAC58   ttaggaacaatctcgaccagctcgtcctctgccataaactcaacctggtatgaatatagctaatcaattaaactattgcagacagaacatgaaacgcata  3973800              ---------->DOF2                                                      <---------GLK1(1)        <------ZmHOX2a(1)                                     --------->ANAC58     --------->GLK1(1)       ----------->GT1                                        --------->ANAC58  --------->ANAC58  ---------->DOF2                                 --------->ARR14(2)            --------->ANAC58 ------->ANAC46                                   <---------ARR14(2)      ------->TEIL              < ------->ANAC58   <---------ARR11(3)             <------ZmHOX2a(1)       <---------CCA1(2)     <----- ------->ANAC58   --------->ARR11(3)----------->GT1<------ZmHOX2a(2)  <---------TOE2(3)        ------   caagtaaagaggagaataaagacctcttgtggagaaaacagtgaaatatgaggatcagtctggccagccattgatgtatctcaagaaatctcagtttcca  3973900                                                                                       <---------AHL20(2)                                                                         --------->HSFC1(2)           <---------ANAC58                                              <---------HSFC1(2)<---------           --------->YAB1<---------YAB1                                  <---------HSFB2a(1)           <---------ANAC58                          <----------DOF2     --------->HSFB2a(1)   ---------->DOF2     --------->YAB1                <---------DAG2    ---------->DOF2 --------->AHL20(2) ---------MYB59     <---------ICU4        --------->AHL20(2)   --------->ANAC46   ------>ZmHOX2a(1) ----HSFB2a(2)     --------->ICU4         <---------AHL20(2) <---------ALFIN1  ------>ZmHOX2a(1) --->HSFB2a(2)----------->GT1            --------->AHL20(2) --------->ZAT14--------->ARR14(2)   gacctaaatgcaagcgtgataaaaattatacttggtagagacatttaatcaaacactttatctacactctacagaaagttcctccttatttttttagcac  3974000                         <---------YAB1                    --------->REM1(1)            --------->At4g35610                  ----------->RAV1(1)            <---------At4g35610                <---------At4g35610             --------->GLK1(2)                --------->At4g35610        ---------->DOF2                          --------->GLK1(2)               --------->ANAC46        <----------DOF2                             <---------GLK1(2)        --------------->AGL15         <---------------AGL15                        --------->ARR14(2)        <---------------AGL15         --------->TOE1(3)                --------->YAB1       ----------------->AGL3         --------->TOE2(3)                --------->AHL20(2)       ----------------->AGL1         --------------->AGL15           <<<<<<<<<ARR2<---------ARR14(2)       ===============================================MADS_MADS    --------->MYB46(3) --GT1 ----------------->AGL2   --------->At4g35610   <---------YAB1--------->WOX13(1)     <------ZmHOX2a(1)   atatcaacttccaatttcagcaacatcatgaaacagcaaacctttaaaagcatctgatgatcaaatctaacaatcaaatttcgcaaattctgaggacata  3974100                <---------ARR14(2)                                                           --------                --------->ARR14(2)                                                           <-------              --------->LBD16                                                                ========             <---------ANAC46                                                                --------            <---------LBD16                 --------->ATHB12                                 ========          --------->ANAC58                 ------>ZmHOX2a(1)                                 ------>ZmHOX2a(1)          --------->ANAC58                 <---------YAB1                     <---------GLK1(2)     <        ---------->DOF2              <---------MYB46(3)                       --------->ARR11(3)   --     --------->ANAC46            <--------HAHB4                <---------ANAC46   <---------ANAC46 <-     --------->ANAC58            --------->ATHB12    --------->CCA1(2)      ----------->ARR10========     --------->ANAC58          --------->GLK1(2)  <---------ZAT6          <--------P        <--------   cttgtaaacgaaacgccggatatagtaagagagaatcatttgttcctgattagtgatatgaagttgagtttacctggttagattttgtgtgattcctgga  3974200                                                                  <---------HSFB2a(2)                                                              --------->HSFC1(2)                                                              <---------HSFC1(2)                                                              --------->HSFB2a(1)     <------ZmHOX2a(2)                                        <---------HSFB2a(1)    --------->AGP1                                        --------->LBD16  *TSS                                                    --------->ANAC46 ->LBD16                                                  --------->ANAC58 --HSFB2a(2)                                              --------->ANAC58 ======HOX2a_HOX2a                 ----------->GT1    --------->ANAC58 ->HSFB2a(2)                  --------->ANAC58        --------->ANAC46 ===========HOX2a_HOX2a   <---------ALFIN1            --------->ANAC58    ----------->GT1 ------ZmHOX2a(2)        <---------REM1(2)           --------->SPL7--------->LBD16 ------->ARR11(3) --------->ARR14(2)                <---------ALFIN1    <------------CBF --------ARR11(3) <---------MYB52(1)--------->At5g28300------>NtERF2--------->LBD16 ================HOX2a_HOX2a  --------->ANAC58--------->ARR14(2)  --------->HSFB2a(2)             --- -LBD16   ------>ZmHOX2a(2)   --------->ANAC46<---------ARR14(2) <---------LBD16        --------->MYB46(3)   agatcagatcgatctcttccgatattctacacacggacagtaaatgaagttcccctacgcccgaaactcccgaagattgaaatatcagtaaccactgtga  3974300                                    ---------->DOF2                                   <------ZmHOX2a(1)              >>>>>>>>>TBF1                                <-----------RAV1(2)         <------ZmHOX2a(1)                     <---------ANAC58                     ------------------------>ANAC81          <-                     <---------ANAC58 ----------->GT1 --------->DAG2                               <-                    <---------At4g35610     --------->MYB52(1)  ------------------------>ANAC81    --                   ------->TEIL <---------LBD16      ---------->DOF2          ----------->GT1      --                <---------REM1(1)--------->LBD16    --------->CCA1(2)   >>>>>>>>>TBF1              -- --->ZmHOX2a(2)------->TEIL    --------->TOE1(2)   --------->ARR11(3)>>>>>>>>>TBF1                 <-   tcgaagagaaggaaatggatgtagcttagcaaacccaggaaagaaaaaacgaagataaaggaggagaagaagaagaagaagagcaaaatagggagagaca  3974400                                                     --------->YAB1                                                    <---------YAB1                                              <---------ARR14(2)                                              --------->ARR14(2)                                             --------->GLK1(1)                                             <---------GLK1(1)                                          <<<<<<<<<<E2Fb        --------->LBD16                                          <------NtERF2        <---------ANAC58 --------ZAT2    <-----------------AGL1 <---------ANAC46       <---------ANAC58 --------At4g35610    <-----------RAV1(1)--------->LBD16       <---------ANAC46 ------->ZAT2    ----------------->AG   <---------ANAC58      <---------LBD16 ------->At4g35610<---------YAB1        <---------ANAC58   <---------ZAT14                     <----- ------->ZAT14   <-----------------AGL2<---------LBD16     --------->ZAT14--------->YAB1      <------ --------ZAT14<----------DOF2        <---------DEAR3(1)   <---------REM1(1)                 <--------   cagcagagagtttcgactttccgattgtggctctctacgatggcgggaaatccgatgatagtgtagcgggaaactaaaataactccaataggtttcggtt  3974500                                              --------->ANAC58                                              --------->ANAC58                   ------>MYB83               --------->ANAC46                   ------>MYB46(1)   <---------GLK1(2)   <---------MYB52(1)              --------->LBD16  ----------->GT1<---------MYB59 <---------LBD16         --------->AHL20(2) ----MYB52(1)    ------->GAMYB --------->ARR14(2)        <---------AHL20(2) -GAMYB --------->AHL20(2)     <---------ARR14(2)       --------->AHL20(2)           ---------->DOF2 -ANAC46<---------AHL20(2) ----------------->AG    <---------ATHB12         <----------DOF2   agaccggtatttaattcaaccgaactcaaaccgaaaccggaattttaaacgaaatcaattttattctaactgatagcactttgtttataaagactagtcg  3974600                                  <---------YAB1                                 --------->AHL20(1)                                 <---------AHL20(1)                                 <---------AHL20(2)                                <---------AHL20(2)                                --------->AHL20(2)                                --------->YAB1                             --------->YAB1                             <---------ICU4                            <---------ATHB12                         --------->AtMYB61                        --------->MYB46(3)                --------->ANAC58                       ----------->RAV1(1)                --------->ANAC58           <---------TOE1(3)                      --------->AtMYB61                  --------->DAG2         --------->MYB59                      <---------ALFIN1               ----------->GT1            <---------TOE1(3)   -                     --------->MYB46(3)     -------->P  ---------->DOF2         --------->DAG2  <----                   --------->ANAC46        --------->WOX13(1)                   <---------TOE2(3)  <-                   --------->ANAC58       <---------WRKY38(1)          <---------ANAC46         -----                   --------->ANAC58      --------->WRKY18(1)   <-----------RAV1(1)   <---------TOE2(3)   aaaaaacaaacaaatcgaatcacaccaccactaattatatttagtcaaccagagatggtaaagcaatgttgtgctgtagaataaggtaaggttttagttt  3974700  Previous    Next  AGI:  At3g12530.1    Description:  PSF2. Identical to DNA replication complex GINS protein PSF2 [Arabidopsis Thaliana] (GB:Q9C7A8;GB:Q5EAG9;GB:Q9LHF6); similar to At3g12530-like protein [Boechera stricta] (GB:ABB89770.1); contains InterPro domain GINS complex, Psf2 component; (InterPro:IPR007257); contains InterPro domain GINS complex, PSF2 component, subgroup (InterPro:IPR016906) Range:  from: 3972353    to: 3974202    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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