Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                            ---------                                                                                           <---------ARR14(2)                                                                                   <---------HSFB2a(1)                                                                                   --------->HSFB2a(1)                                                                                   --------->HSFC1(2)                                                                                   --------->At4g35610               ------>ZmHOX2a(2)                                                   <---------HSFC1(2)               =================================HOX2a_HOX2a                       <-----------ARR10              <------ZmHOX2a(2)                                   --------->HSFB2a(1)      --------->ARR14(2)             <---------ARR14(2)                       ------->TEIL<---------HSFB2a(1)    --------->LBD16       ===============HOX2a_HOX2a                     <---------ARR11(1)    <XXXXXXXXXXXXXXXXXXXXMIR822       ==============HOX2a_HOX2a                     <---------GLK1(2) ------>ZmHOX2a(1)<---------HSFB2a(2)       ------>ZmHOX2a(1)                             <---------CCA1(2) ============================HOX2a_HOX2a --------->ANAC58                                 <---------HSFB2a(2)  =============================HOX2a_HOX2a --------->ANAC58       <---------MYB52(2)        --------->HSFB2a(2) --------->TOE2(3) --------->HSFB2a(2) -------->DOF2==================================HOX2a_HOX2a   --------->ANAC58   <---------GLK1(2) >ANAC46     <---------ARR11(3)                <---------ALFIN1  ------->TEIL --------->HSFB2a(2) -->HVH21    --------->ARR14(2)          ------>ZmHOX2a(1)    --------->ANAC58<---------HSFB2a(2) ---   caaacgctccttcacgatctgttcaaacgaacaaaaacacatcctagcccctctcgaatctctcacgaacatccttatgtccagaagcttcccgatctcc  3956400                                                      ---------->DOF2                --------->LBD16                                                    --------->ANAC58               <---------LBD16                                                   <------NtERF2                   --------->ZAT18                                                  ------>NtERF2                   --------->ALFIN1                                                 --------->DEAR3(1)           ---------->DOF2                                                --------->RAP2.3(1)        --------->ANAC58                                              --------->ANAC46             --------->ANAC58    ------>NtERF2                             ------->GAMYB           ------>ZmHOX2a(2) -----ALFIN1            <-----------GT1      --------->MYB46(3)       ==========================HOX2a_HOX2a >GLK1(1)--------->REM1(1)            <---------SPL7--------->ANAC58<---------ARR14(2)      <-------- ------>ANAC46 --------->HSFB2a(2)   <---------MYB46(3)             --------->ARR14(2)   <------ZmHOX2a(1)   actcgatgcctacatttctcgagttttttctggtcttggccgttccaaacgccgacgaaagtcgttttgggatcggcaaggaaagtgcggaggacttttg  3956500                                                                               <---------ARR14(2)                                                                               --------->ARR14(2)                                             --------->ANAC58              ------>ZmHOX2a(2)                                             --------->ANAC58            --------->ARR11(3)                                          --------->DEAR3(1)             --------->ARR14(2)                                          --------->At1g77200            <---------ARR14(2)                                          ------->GAMYB                  <---------AGP1                                         --------->DEAR3(2)            <---------MYB46(3)        <---                                        --------->MYB52(1)          <---------MYB46(3)  <---------ARR14(2)                                      --------->MYB46(3)           <---------AtMYB61    --------->ARR14(2)            <-----------GT1           <---------MYB52(2)           --------->ALFIN1   --------->HSFB2a(1)    --------->At5g28300           <---------At4g35610           <---------AtMYB61------>ZmHOX2a(2)  - --DOF2  --------->YAB1      ----------->HVH21                  <-----------RAV1(1)   <---------HSFB2a(1)   ggagaccgtaattgtaacctagttggatgatgagacagcgactaccgacgcacaactggagagtttttggtggtggatctggatcggaactatccggtct  3956600                                                           --------->ANAC58                                                           --------->ANAC58   <------NtERF2                                                           --------->ANAC46  --------->LBD16                                                        <---------SPL7       <---------MYB46(3)                                                        ----------->HVH21   <---------ANAC46                                                       --------->ATERF1(1) <---------LBD16                                                      <---------At4g35610  <------NtERF2       <-----                                                    <------ZmHOX2a(1)     <---------RAP2.3(1) <------                                               <---------MYB46(3)  --------->GLK1(2)------->GAMYB ---                                               --------->MYB55(2)  --------->ARR14(2)   --------->At4g35610                                               <---------REM1(1)   <---------ARR14(2)   <---------At4g35610  --------->ZAT14            <---------SPL7  <-------GAMYB--------->SPL7--------->At4g35610  <-------  <---------ZAT14         <------ZmHOX2a(1)<---------YAB1------>NtERF2  <---------At4g35610  <------- ------ZAT14      ------->GAMYB------->TEIL<---------TOE2(3)       ------->TEIL  --------->MYB52(1)-- -------->ANAC46 --------->MYB46(3)   --------->ATHB12--------->At4g35610<---------DEAR3(1) ---------   ccactgaacaccgattccaacgacgagaggatgtaccgagtgattacggttgtaggagcggacgctacgaatccagcggcggataacggaagcagtcggc  3956700                                                                <---------YAB1                                                           --------->HSFB2a(1)                                                           <---------HSFB2a(1)                                                           <---------HSFC1(2)                                                           --------->HSFC1(2)                                                       ----------->GT1                                                      <---------ANAC55(2)         <------NtERF2    ----------->HVH21                                 --------->ANAC58           <---------ATERF1(1) -NtERF2  <------ZmHOX2a(2)                           --------->ANAC58           <---------DEAR3(2) ---ORA47(2)                                         --------->SPL7             <---------DEAR3(1) -------->HVH21                                      <---------LBD16  <----------DOF2        ------>ZmHOX2a(2) --DEAR3(1)                        ---------->DOF2 <---------SPL7 <---------GLK1(2) ------>NtERF2 --RAP2.3(3)                   <----------ID1    <---------------AtSPL8       <-----------HVH21 ------->MYB52(1)      --------->LBD16           <---------------AtSPL3  <---------YAB1     <-------- >ATERF1(1)       --------->ATERF1(1)    ----------------------->TaNAC69(2)  ------>ZmHOX2a(2)   gtaacggtgacgatcaagtcgtctccgaaaaaatcgacaaagtgtttttggtgagtacggaaacttctgattcttttgatcgtcggagccattgatctgt  3956800                                                                      <-------TEIL              -----                                                                  --------------->AtSPL8      <------                                                             <---------YAB1                  <-------                                                          --------------->AGL15           <---------ICU4                                                         <---------ANAC58                 --------->YAB1        <----------DOF2             ---------->DOF2 <----------DOF2----------->GT1     --------->YAB1  <<<<<<<<<TBF1                   *TSS   ---------->DOF2 <---------ANAC58         ------------------- -At4g35610                   <---------ZAT6    <---------ARR14(2)<---------------AtSPL8 <---------YAB1   cttcttcttcctttctctaaatttttgagcgagtgttagaaagagaagcggtttctttttcttgttatagggtacatttttgtttctagttataatcacc  3956900                            ------------>CBF    <----------DOF2       <---------ETT(2)      <-----------HVH21              --------->ANAC58   ------>ZmHOX2a(2) --------->SPL7      ------->TEIL                          --------->ANAC46 --------->ARR11(3)  <---------TOE1(2)   <---------------AtSPL3                --------->ANAC58   <-- <---------ARR11(3)<---------SPL7   --------->At4g35610            --------->YAB1            ======== ---->DEAR3(1)   <---------------AtSPL3 <---------AtLEC2          <---------ATHB12           <------- ---At5g28300  <-----------GT1      <---------At4g35610 <-----------HVH21   <---------ARR14(2)   <--- ----GT1   <---------ZAT6 ----------->HVH21    <---------ZAT6     <---------YAB1             -------- -->WRI1---------->ID1  <-------GAMYB  <-------TEIL     <-----------TGA1    --------->ARR14(2)<------   gtcgatctttgtagttttaatcgtacggttgacaatggagatgcatgtactgtcacatcgtcaggcctatcatagatgtatacgcaaaacatttactaat  3957000                                                                            <---------ANAC58                                                                            --------->ANAC55(2)                                                                            <---------ANAC55(2)         --------->ANAC46                                                   <---------ANAC58         <---------RAP2.6(2)                                               --------------->AtSPL3         <---------RAP2.3(2)                                               --------------->AtSPL8        <---------At5g28300        --------->TOE2(3)                      <-----------GT1       <-----------GT1            ----------------->AG               <----------DOF2 -------At5g28300           <---------YAB1                           <---------DAG2 ===================================================MADS_MADS   --------->YAB1 --------AGL15             <---------AHL20(2)                  <---------YAB1  ------->TEIL --------GT1             <---------YAB1 <---------TOE2(3)     --------->AHL20(1)                 ---- ------->AGL15        <---------YAB1  ---------->DOF2         <---------AHL20(1)        <-----------GT1 ---ICU4<---------LBD16<---------AHL20(2)                     --------->AHL20(2)    <----------DOF2   tactgtattttacggctctgaatttttatttttatttccataaaggtttgatgaagacatggaatataatacttttttacgtacttctttttactaaaat  3957100                                     --------->TOE1(3)                                     --------->TOE2(3)                             <--------P                           <------MYB83                                                         <----                           <------MYB46(1)          <---------ANAC58                          <------                          --------->MYB59           <---------ANAC58     <--------ATHB1       -------                          --------->MYB46(2)<----------DOF2              --------->ATHB12     <------                          <---------TOE2(3)<---------DAG2               --------->ICU4       --------                 ------>NtERF2<-------TEIL --------->TOE2(3)            <---------YAB1       <-------        <---------MYB52(1)--------->MYB111(1)   <XXXXXXXXXXXXXXXXXXXXMIR835-3P     ----------->GT1 ------->GT1    <---------RAP2.3(3)  --------->YAB1 <---------ANAC46    <---------ATHB12   --------->YAB1   agtttattcagttatttgggggcttaattaggtagataaccataacctttttttgtgtgtttttttcacgaacaatgattcactgatgtaaaatcataat  3957200                                  --------->ANAC55(2)                                  --------->ANAC58                                  --------->ANAC58                                  --------->ANAC46            --------->ARR11(3)                                  <---------ANAC55(2)         <---------ARR11(3) -----YAB1                     ----------->HVH21              <---------AHL20(1)              ------- ---ICU4                       ----------->TGA1               --------->AHL20(1)          --------->AHL20(2) -->ATHB51                --------->ZAT6                     <---------CCA1(2)          --------->TOE2(3) --HAHB4                  --------->ANAC58                 ------>ZmHOX2a(1)            <----------DOF2 ->ICU4                   --------->ANAC58      <---------ARR11(3)                      --------->TOE1(3) --YAB1                 <-----------GT1   <---------YAB1<-----------GT1           ----------->GT1<---   tactgatgaagttaactttcaacgtataacgctatgacgcaattactcttgatattttttcctatatattggtttgacaaaattttgtaactttaaatat  3957300  Previous    Next  AGI:  At3g12470.1    Description:  nucleic acid binding. similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18256.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 3956064    to: 3956834    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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