Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------bZIP60(2)                                                     --------->bZIP60(1)                                                 <-----------HVH21                                                <---------ANAC46                                                <---------ANAC58                                                <---------ANAC58   --------->YAB1                      --------->CCA1(2)        <-------TEIL       <---------YAB1             --------->ANAC55(2)             ------->MYC3        --------->ARR11(3)             --------->ANAC58                <-------MYC2        <---------ARR11(3)            <-------TEIL                     ------->MYC2       --------->YAB1            <---------LBD16                  <-------MYC3  <----------DOF2            --------->SPL7                   ------->MYC4 <---------ANAC58        --------->ARR14(2)           --------->CCA1(2)              <---------bZIP60(2)  <---------YAB1 --------->ALFIN1          <---------SPL7                  <---------ANAC46<---------ANAC58  <---------MYB46(3) -------MYB59--------->ANAC58          ----------->HVH21  <---------ANAC46 <---------DEAR3(1)-------- ----->ANAC46<---------ANAC55(2)     ----------->GT1<---------AtMYB61     <---------At4g35610-------- -P     <---------------AtSPL3      <------ZmHOX2a(1)<---------bZIP60(1)  --------->At4g35610--------   cccaattctgaaggtacggaagagaaacgagaccagaaggagtgacatgtgcgtgaggtcgcttgatgatcatatcagcggtgggattcacatagacgca  3945500             --------->CCA1(2)       <---------ANAC46       <---------bZIP60(2)                                                 <---------GLK1(2)    ----------->HVH21                                                  <------NtERF2    ----------->TGA1                   <---------TOE2(2)               --------->At4g35610  <------ZmHOX2a(1)     <------ZmHOX2a(1)                              <---------At4g35610<----------DOF2 ->ANAC46   --------->ARR14(2)         <---------TOE1(2)          --------->DAG2 --------->SPL7   <-- ->ANAC58   <---------ARR14(2) <---------GLK1(2)                ---------->DOF2<---------SPL7   <---- ->ANAC58  <------ZmHOX2a(1)   <---------ARR11(3)            --------->AtLEC2--------------->AtSPL3<-   aggaggatgacgaggatatgactcgaggagccagataatcacaggtatgttataggtgactccatgaaaaggcatcggaatcgtaccatctgcttgaagg  3945600                                                                                                <----                                                                                               ------                                             <----------DOF2                                  -------        --------->DEAR3(2)         <---------ANAC46                                          --------   <---------LBD16                 <---------ANAC58  <XXXXXXXXXXXXXXXXXXXXXMIR831          <------ZmHOX2a(2)  --------->MYB52(1)               <---------ANAC58<------ZmHOX2a(1)             <-----------RAV1(1)  <---------WRKY18(1)             ----------------->AGL1                         <---------REM1(1) ----------->HVH21                <-----------------AGL2                        --------->ARR11(3) --------->WRKY12    <---------ANAC46<---------MYB52(1)               <------MYB83        --------->ARR14(2) -------MYB46(3)  <---------MYB52(1)<---------RAP2.6(3)----------->GT1<------MYB46(1)     <---------ARR14(2) --ZmHOX2a(1)--------->AtMYB61   ------>NtERF2   <---------TOE2(3)   <---------TOE2(3)  --------->LBD16 ------GAMYB--------->MYB46(3) <XXXXXXXXXXXXXXXXXXXXMIR4228          --------->MYB59  <---------LBD16   aggttgacggagcgaccatcgttgtgcataaacgatgccgttttgggctctaaggaagggtaagaagagattaggttaagtagatgttgccggatcaacc  3945700                                                                                         <---------MYB46(3)                                                                                         --------->LBD16                                                                                         ------>NtERF2                                                                                        <---------DEAR3(1)                                                                                        --------->ALFIN1                                                                                       --------->ATERF1(1)                                                                                       <---------LBD16                                                                                       <------NtERF2                                                                            <---------ANAC46      ---                                                                           <---------LBD16      <----                                                                        --------->At4g35610     <----                                                                        --------->ZAT2<---------RAP2.3(1)                                                                        <---------At4g35610     -----                                                                    ------->TEIL     <---------RAP2.3(2)                                  --------->ZAT18          <---------ARR14(2)        <---------DEAR3(1)                                  <------NtERF2   <------NtERF2--------->At4g35610   <---------RAP2.3(3)                                  ------>NtERF2   --------->At4g35610   <---------ZAT2<---------DEAR4(2)                                 --------->DEAR3(1)        --------->ARR14(2)--------->LBD16    ----- -----ALFIN1                    --------->PCF2 --------->ZAT18 <---------At4g35610   --------->ANAC46 --->MYB46(3)     --------->ZAT18<---------ATERF1(1)      <------ZmHOX2a(1)<---------At4g35610  ----- ->P    <---------HSFB2a(1)     <---------DEAR3(1)<---------At4g35610----------->RAV1(2)<---------ANAC46 ->WOX13(1)  <---------SPL7     --------->ATERF1(1)  <------ZmHOX2a(1) <-----------RAV1(1)<------NtERF2   acttgttggactcttcgtaggggactgaagatgggccgcgctgggagagggcagaggagaggaactgctgaacctgctgcggattagacggcgggggaac  3945800                    <-------GAMYB                   <---------DEAR3(1)                  <------NtERF2                 <---------RAP2.3(1)                             --------->ARR14(1)                <---------At1g77200                              --------->CCA1(2)                --------->ETT(1)                                 --------->GLK1(2)                <---------DEAR3(1)                              --------->ARR11(1)                <---------RAP2.3(3)                             --------->ARR14(2)                <---------RAP2.6(2)                             <---------ARR14(2)             --------->ALFIN1                                  <---------HSFB2a(1) ------>MYB52(1)<---------DREB2C(2)                            <---------GLK1(1) -----HSFC1(2)  <---------DEAR4(1)                     <---------LBD16                            --- -----HSFB2a(1)--------->DDF1                       <---------ZAT2<-------TEIL                    --- ---->HSFB2a(1)<------NtERF2                    ------>NtERF2<------ZmHOX2a(1)                  <---- ---->HSFC1(2) --------->ATERF1(1)       ----------->TGA1  --------->ALFIN1             ----------->GT1 ---->MYB46(3)<-----------HVH21        <---------At4g35610*TSS----------->ARR10>>>>>>>>>TBF1 <-------   catcggagttaaacggtgtcggcgttggaagtccaaattgaagatgacgacgacaactggggaggagattcgatttaagaagaagaagtaatgttattat  3945900     --------->ICU4    <----------DOF2            --------->ZAT14                 --------->ZAT14           --------->ZAT18 ------>ANAC55(2)              <---------ZAT14              --------->LBD16              <---------ZAT18 ------>ANAC46           <-----------GT1                  <---------LBD16--------->AHL20(2)         - -------GT1           <----------DOF2             ----------->GT1       --------->YAB1  --------->ALFIN1 --YAB1          <-----------GT1                  <---------ZAT6  --------->ANAC46   <------ZmHOX2a(1)   acgcgtctttattagctatttactcttttacccttcagtgttgttttggatagtgtttaatccggtttactccataaaaatttgtaaggagtggacatgt  3946000                            ---------->DOF2                    --------->ANAC46                                          ----------->GT1                  --------->ANAC58                                      <---------MYB52(2)                  --------->ANAC58                                     --------->ANAC58                  --------->ANAC46                              <---------------AGL15              <-----------GT1--------->DAG2                <---------DAG2 --------->MYB52(1) --------->DOF2  ------->GAMYB                          <-----------GT1--------->ANAC58   tccaaagtccaaagtttaacacccaaaacataaagcgagtttgtgatcaaagttttattcaccttactcatgtaagtaacgagtgaaaaacaaaacagtt  3946100                --------->YAB1                                   --------->ANAC46               --------->ZAT6        ----------->HVH21        <-------TEIL <---------AHL20(2)          --------->TOE1(3)     --------->MYB46(3)      ---------->DOF2   <---------AHL20(2)          <----------DOF2     --------->ANAC46       <----------ID1 --------->TOE2(3)          --------->TOE2(3)<-------TEIL              --------->ANAC46     --------->AHL20(2)   ------      <---------CCA1(2)   --------->CCA1(2)        --------->MYB52(1)     <---------AHL20(1)   ======    --------->YAB1 --------->YAB1  --------->O2--------->YAB1--------->CCA1(2)    --------->YAB1   tttttctcataactttaacaataagaagattcaaaccacttgacaacaaaaataaacgaaaagattcaaaccacaatttttttctcataacaaaacaaaa  3946200            --------->O2            --------->ANAC55(2)            <---------O2            <---------TGA1a            =====================bZIP_DOF       --------->ANAC58                                        --------->ANAC55(2)       --------->ANAC46                          <---------AHL20(2)       --------->ANAC58                         --------->AHL20(2)    <-------TEIL            ----------->GT1     <---------AHL20(1)                             ------   --------->CCA1(2)  ---------->DOF2           --------->AHL20(1)                    <---------O2 ---->DOF2  <---------ANAC55(2)                 <---------AHL20(2)                  --------->CCA1(2) =====================bZIP_DOF         --------->ANAC46   <---------YAB1         --------->LBD16   agaagattcaagtcacttgtcaacaaaagacagaaaaatccaagtagcaatttattcattttgatacttgttttcaaacttcccagagacgagtccaaac  3946300                                                                                               ------                                                                                             --------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                        --------->ARR14(2)                                   --------                                        <---------ARR14(2)                                   <-------                                        --------->GLK1(2)                                    --------                                ----------->RAV1(2)             <---------At4g35610         <--------              --------->ANAC46 ------>NtERF2                    --------->At4g35610         <--------  --------->ZAT2           ----------->TGA1           <---------HSFB2a(2)                  --------->LBD16  <---------ZAT2  --------->ANAC58      <-----------ARR10  ------>ZmHOX2a(2)        <---------CCA1(2)  <---------At4g35610      ----------->HVH21          --------->HSFB2a(2)         <---------ANAC58 ------>MYB46(1)  --------->ANAC58     <---------GLK1(2) <---------ARR11(3)       <---------ANAC58 -- ------>MYB83 --------->ANAC58--------->ANAC58     --------->ARR11(3)           <---------YAB1<------ZmHOX2a(2) --->MYB46(3) --------->ANAC58--------->ANAC58     <---------ARR11(3)    <---------ATHB12<---------LBD16   accaagctgatggcaaacgtaagcatctagtgacgcctgaagaatctgatcaaggtctagatcgtaagcggtccaatcgctcatgcttatctccggatct  3946400  Previous    Next  AGI:  At3g12400.1    Description:  ATELC/ELC; ubiquitin binding. similar to ATELC-LIKE/ELC-LIKE, small conjugating protein ligase [Arabidopsis thaliana] (TAIR:AT5G13860.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96512.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Tumour susceptibility gene 101; (InterPro:IPR008883); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 3944303    to: 3945858    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12410.1    Description:  3'-5' exonuclease/ nucleic acid binding. similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12460.1); similar to hypothetical protein OsI_023772 [Oryza sativa (indica cultivar-group)] (GB:EAZ02540.1); similar to Os07g0112400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058743.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain 3' (InterPro:IPR002562) Range:  from: 3946043    to: 3946967    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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