Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ------>NtERF2                                              --------->DEAR3(1)                                              --------->DREB2C(2)                                             --------->DEAR4(2)                                             --------->ORA47(2)                <------ZmHOX2a(1)          <---------ALFIN1            ------>ZmHOX2a(1)             <---------ABI4(2) <---------YAB1                 <---------YAB1         --------->ICU4          ------>ZmHOX2a(1)       <---------YAB1      <----------DOF2   ataaccttgtaatcctgaggagcatacaatttctcctcaaaaacagcaccgcctaaattgttatcgtagagcttcttctctttctgaaaattgatgaaag  3937700                <---------ARR11(3)                <---------ARR14(2)                --------->ARR14(2)                --------->ARR11(3)               <---------CCA1(2)           ----------->GT1         <-----------RAV1(2)        --------->At4g35610        <---------ZAT2        <---------At4g35610        --------->ZAT2                                          <---------ANAC58  <------MYB83      -  ---------->DOF2                            <-------TEIL       <---------ANAC58  <------MYB46(1)<---   tcttcaaagcagcaggtatatcttcagattgaacgaatagccaagcgttcatacccttcatacatggcttcagagactcccatttggttccttccaaggc  3937800                                 <---------ANAC46                                 <---------ANAC58                                 <---------ANAC58                                <-------TEIL                             --------->HSFC1(2)                             <---------HSFB2a(1)                             --------->HSFB2a(1)                             <---------HSFC1(2)                   --------->ARR11(3)                             --------->At4g35610             --------->ANAC46                             --------->ZAT2                 <---------LBD16                            <-----------ARR10          <---------ARR14(2)                           <------ZmHOX2a(1)           --------->ARR14(2)                         --------->ALFIN1             --------->HSFB2a(1)                       <---------O2                   <------ZmHOX2a(1)       <---------ANAC58       ---------->DOF2 <---------ANAC46               <---------HSFB2a(1)     <---------ANAC58       <---------ZAT14<------NtERF2              --------->ANAC46<---------GLK1(1)           <-------GAMYB -------->REM1(2)    ------>NtERF2              <---------LBD16  --------->GLK1(1) --------->ANAC46 -------DOF2        ----------->HVH21         <---------REM1(2)  <---------At4g35610 <----------CDC5   tttgtagactaaagtgttcttggcgacgaggagcttcgtgtttgtgttttcacggaggattccacggagctcttgtagttgcttcacgctgagaccgttg  3937900                                                   --------->ZAT2                                                   <---------ZAT2                                                <---------ANAC58             --------->ANAC58                                      ------>ZmHOX2a(2)                <-----------RAV1(2)                                    --------->ARR11(3)          --------->ARR11(3)        --------->LBD16             <---------ARR11(3)    --------->ZAT2     --------->ANAC58      <---------LBD16             <-------TEIL  <---------ANAC58<---------ARR11(3)   tagttgattccggtgatgaaatggcagttttctaggttgatcttcgtcttccctgctacgagcagagctcttctcaggctagccatcgatctatacagag  3938000                                           --------->ZAT2                                           <---------ZAT2                                           <---------At4g35610                      <------ZmHOX2a(2)    --------->At4g35610                                     --                     --------->ARR14(2)  <---------ZAT18                                           --             --------->ANAC58          <-----------HVH21                                           <-             --------->ANAC58      --------->GLK1(2)                                              <-- <-----------------AGL1    --------->MYB52(1)           <-------TEIL                --------->TOE2(3)   gctaactcaaatggcacgatttcgatccccaacgaagaaactgtgagctcgagcgagattcaaaatgagaaatgctagggttcttacctcagacttaaga  3938100                                                                                              <------                                                                                              <------                                                                              <---------AHL20(2)                                                                         <---------YAB1       -------                                                                      --------->GLK1(2)<-----------TBP                                                                --------->HSFB2a(2)  --------->ATHB12 *TSS         <----------DOF2                                   <---------HSFB2a(2) <---------YAB1 ------->GLK1(2)                                            <---------YAB1    --------->AHL20(2) ------->ARR14(2)                       <------ZmHOX2a(1)  <---------AHL20(2)--------->AHL20(2) --------ARR14(2)                     <---------TOE1(3)    <---------AHL20(1)<---------AHL20(1) -------GLK1(2)      <----------DOF2  <---------TOE2(3)  <---------AHL20(2)  <---------AHL20(2)   gaatcggagaggtttactttgggctattttgagttgggctaaggaaatgacaaaactatattatttttagaaattctaatttttttatgatttatagatt  3938200                                                                 ---------->DOF2              <---------AHL20(2)                              --------->At4g35610              --------->AHL20(2)                <---------WOX13(1)              <---------AHL20(1)   ---------->DOF2   ------>ZmHOX2a(2) ---GLK1(2)   --------->AHL20(1)  ==========================HOX2a_HOX2a   --------->AHL20(2)  ------- ---ARR11(3) --------->AHL20(2)   ------>ZmHOX2a(1)--------->ARR11(3)    <---------ATHB12     <------ -->ARR11(3) <---------AHL20(2)---------->ID1 --------->ATHB12<---------At4g35610          ----------   tttgtatttgtccaaataaattttggtatttttgtcctaaagcatcgttcattgatctagagacagctaaagctaatcaaataagaaactccacaattaa  3938300                                                            <----------DOF2                                                        <-----------GT1                                                     --------->YAB1                                                     <---------ICU4                                                   --------->ARR14(2)                                                   <---------ARR14(2)                                                   <-----------ARR10         <------ZmHOX2a(1)                    --------->ANAC46  --------->At4g35610                         --------->ANAC58 -->AHL20(2)                                  --------->ANAC58     ---------->ID1 ---AHL20(2)                          <---------ICU4<---------ATHB12                           ------ ----->AGL15 --------->YAB1      <---------------------WRI1<---------DAG2           ---------->DOF2   tagcaactggaggaatcacaaatagttgtatcgaatttgataatttctaagccaatcttcacctttctcgtcgtaatccatcttagtaaaggcattcccc  3938400                                         ------->TEIL                                      --------->AtLEC2                               --------->ANAC58                                 --------->ANAC58                                    --------->ANAC46                                 --------->ANAC58                                   =================                                 --------->ANAC46                     --------->ANAC58            ---                                ------>ZmHOX2a(1)                     --------->ANAC58           <---                                ==============================HOX2a_HOX2a           ------>ZmHOX2a(2)                                =============================HOX2a_HOX2a            <---------LBD16                         --------->ARR14(2)            ------>ZmHOX2a(2)          --------->ARR14(2)                         <---------GLK1(2)             <-------TEIL   --------->ANAC46--------->LBD16                         <---------ARR14(2)           <------ZmHOX2a(2)           <---------ARR14(2)                        --------->At4g35610          --------->ARR14(2) --------->DOF5.7(2)--------->ARR11(3)                        <---------At4g35610          <---------ARR14(2)--------->TOE2(3)   <---------ARR11(3) --->LBD16  --------->At4g35610<---------ALFIN1<---------ALFIN1    --------->MYB46(3)--------->ANAC58   aagaagttcaaattagcagcaaatgcagatgctcctcgccatgcatccagcactggatccatagctctaaccacgttaatgggtgatccgcaaggtctta  3938500                                                            --------->ICU4                                                        <-----------HVH21                                                       --------->ANAC46                                                    ------>NtERF2                                                   --------->ANAC58                                                   --------->ANAC46                                                   --------->ANAC58                                                   --------->DEAR3(1)                   --------->MYB46(3)          --------->REM1(1)                  ------>MYB46(1)              <---------ALFIN1                  -------->P      --------->HSFB2a(2)  --------->ANAC58   ------>ZmHOX2a(1)------->GAMYB <---------HSFB2a(2)  --------->ANAC58 =========HOX2a_HOX2a             --------->LBD16  ------->GAMYB ------>YAB1      ------>MYB83   <---------LBD16  <---------MYB55(2)       <---------MYB52(1) <------ ------YAB1<---------ALFIN1      --------->LBD16  --------->MYB46(3)  <---------ZAT2  ------>ZmHOX2a(1)   tcatcctaatcccacattccaaccgctcgttcatccctggaagaaggctacacccgcccgtcattagtatcgagctcgttagcctctcctctaactcttt  3938600  Previous    Next  AGI:  At3g12370.1    Description:  ribosomal protein L10 family protein. similar to ribosomal protein L10 family protein [Arabidopsis thaliana] (TAIR:AT5G13510.1); similar to unknown [Picea sitchensis] (GB:ABK23199.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) Range:  from: 3937197    to: 3938101    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12380.1    Description:  ATARP5 (ACTIN-RELATED PROTEIN 5). similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69178.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74904.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) Range:  from: 3938169    to: 3941907    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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