Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ===================================HOX2a_HOX2a                     ------>ZmHOX2a(2)                    <---------GLK1(1)                    ====================================HOX2a_HOX2a                    --------->GLK1(1)                    <------ZmHOX2a(2)                   --------->ARR14(3)                   <---------ARR14(2)                   --------->ARR14(2)                   --------->ARR11(3)                   <---------ARR11(3)                  --------->GLK1(1)                  <---------GLK1(1)                                        ----------->HVH21        <------ZmHOX2a(1)                                                <---------At4g35610        ====================HOX2a_HOX2a                                  ----------->RAV1(2)     <---------At4g35610                         ------>ZmHOX2a(1)       --------->At4g35610     --------->At4g35610 --------->LBD16  <-----------GT1           --------->YAB1             ------ ----ID1===================HOX2a_HOX2a   <-----------GT1         <---------CCA1(2)             <-----   caaattcagaggaatcacagagatctccgaaaaccctacaaattttccctcctctcagtgtctctctctatcttcacctgacttccctcttctctctcta  3919100                                                <<<<<<<<<<E2Fa                                                <<<<<<<<<<E2Fd                                                <<<<<<<<<<E2Ff                                                <<<<<<<<<<E2Fb                                                <<<<<<<<<<E2Fe                                                <<<<<<<<<<E2Fc                                               --------->LBD16                                             --------->LBD16                                    <----                                      --------->ARR11(3)                                  <---------AHL20(1)                       --------->TOE2(3)   <---------LBD16                                --------->AHL20(1)                 <------NtERF2        <---------ARR11(3)                                 --------->AHL20(2)                --------->LBD16  <------ZmHOX2a(1)                                       --------->YAB1               <---------RAP2.6(2)   <---------CCA1(2)     <---------LBD16     <---------ANAC55(2)---       <---------YAB1  --------->TOE1(3)*TSS <---------LBD16 --------->LBD16   --------->ANAC55(2)<-- --->HSFB2a(2) --------->ANAC46 ----------->GT1----------->GT1          <-------TEIL------------>CBF ----HSFB2a(2)<---------LBD16---------->DOF2<---------ANAC46--------->ANAC46  <-------TEIL<---------AHL20(2)   gaatggggtctgattatgcggcaaaccctaaaaaaggatatatctcgcgcgggaaaaacaacacggagaatacatacacatacgtatacaattatattcg  3919200                                     ----------->HVH21                         <---------ANAC55(2)                              --------->LBD16                         --------->ANAC46                                <---------ANAC55(2)     <---                         --------->ANAC58                                ----------->GT1        -----                         --------->ANAC55(2)                             <---------ANAC46       -----                         --------->ANAC55(1)       --------->ANAC46      <---------ANAC58      <-----        --------->MYB46(3)  ------->TEIL         <---------At5g28300     <---------ANAC55(1)   <-----  <----------DOF2        --------->ANAC58<---------MYB59                 <---------ANAC58      ------ -----LBD16             --------------->AtSPL3  <-----------GT1          --------->ANAC55(2)   ------ ------>ZAT18   <---------AHL20(2)  <-----------HVH21                 <---------MYB52(1)      <------ -------ZAT18  --------->AHL20(2)----------->RAV1(2)------>NtERF2   <-----------RAV1(1)      --------   cgcgctttcaaccactattaaatcgacacgtacccatctgtgacccaattttaccgccaaaacttacttactgttgcgtgaaacgctgagagggaaagat  3919300           --------->ATERF1(1)           <------NtERF2          ------>NtERF2         <---------ANAC46        <---------LBD16      <---------O2      --------->O2      ===========================================bZIP_DOF      --------->TGA1a      <---------TGA1a   <---------MYB52(1)   <---------REM1(2)   ----------->HVH21   <------NtERF2  ------>NtERF2  <---------RAP2.6(3)                                                                          <-----  <-----------TGA1                                                                            -------  <-----------HVH21                                                                          -------- --------->DEAR3(1)                                                                          -------- --------->RAP2.3(3)                                                                         -------- --------->RAP2.6(2)                  ---------->DOF2                                       <-------- --------->ANAC46                   --------->DOF5.7(2)<---------ANAC58   <---------O2      <-------- <---------ATERF1(2)            <---------PCF2         <---------ANAC58   <---------ANAC46  --------- ----TEIL<---------DEAR3(1)   --------->ZAT18----------->RAV1(2)          --------->O2      <-------- ---->ARR14(1)               --------->ATERF1(1)       --------->ANAC55(2)<---------TGA1a   <-------- ---->CCA1(2)                --------->ALFIN1===============================RAV         <---------WOX13(1) ----ARR14(2)              <---------ANAC46 <---------SPL7         ---------->DOF2    --------->ATHB12 ----GLK1(2)          --------->MYB52(1)    ------>NtERF2          =================bZIP_DOF<-------- --->ARR14(2)       --------->MYB46(3)<---------DOF5.7(2)       ----------->RAV1(1)  --------->ICU4-- --->ARR11(1)       <---------MYB52(2)==============================================bZIP_DOF<-------- ---HSFB2a(1) <---------------------WRI1--------->ANAC46 ----------->HVH21--------->TGA1a  <--------- --->ARR10--------->LBD16  --------->ALFIN1--------->DEAR3(1)   ------>NtERF2        <---------YAB1--   tcgccgtcacggcggggtcgaaacaaacggagtgggccattaacgccgtctgggttttcgtgaccgcgacaaagcctcgtgtgagttatgattgggccca  3919400 ----ALFIN1                       --------->At5g28300 -->MYB46(3)                   <---------LBD16 ->TCP16(2)                   --------->O2 ->TCP23                      =============================================MYC_MYB ->TCP15(2)                   <---------O2                             --------->HSFB2a(2) -ZAT18                    ----------->HVH21                       <-------GAMYB -TCP11(2)                <-----------HVH21                        <---------ANAC58 >PCF2            <---------------AGL15                            <---------ANAC58          -------- -TCP15(1)        --------------->AGL15   <---------ANAC55(2)     <------MYB83 <---------YAB1<------- -TCP20       <---------MYB52(1) --------->LBD16    <------------CBF   <---------HSFB2a(2) <---------LBD16 -PCF5      <---------ANAC58  <---------TGA1a<---------ARR14(2)   <---------MYB46(3)     --------->ARR14(2) ------->TOE2(3) <-----------------AGL1   --------->ANAC55(2)     <------MYB46(1)        <---------ARR14(2) -TCP16(1)------>NtERF2 --------->MYB59 --------->AHL20(2)       <---------AtMYB61      ------>ZmHOX2a(1) --TCP11(1) <---------ANAC58  --------->TGA1a--------->ARR14(2)<---------MYB52(1)   <---------ZAT18 ------->TOE1(3) <-----------------AGL2 <-----------GT1      <---------HSFB2a(1)    --------->ZAT18   cccttaatacgatgccgtttctagtttaggtcacgcgggaaattacatatttgccattgtagaacgtttggttgcagaagtatgagtgtcctatccgcgg  3919500                                                                                                    -                                                                        --------->TGA1a             <                                                                        <---------TGA1a            <-                                                                        --------->O2              <--                                           <------ZmHOX2a(2)            <---------O2              <--                                          <---------ARR14(2)       <---------ETT(1)               <--                                 --------->ALFIN1                  --------->ANAC46               ---                                 <---------ZAT6             --------->ARR11(3)                    <--                         --------->At4g35610  --------->LBD16<---------CCA1(1)                    <-- ->LBD16                 <---------At4g35610------>ZmHOX2a(2)<---------RVE1(1)                    --- --LBD16 *TSS        <-----------TGA1     --------->ARR14(2)<---------ARR11(3)       ------>ZmHOX2a(1)   atggattcagattaagtcttcttcgtcatcttcgagtgtgagtggatccagagagagaattagatatttccgacacgaggcaaattcctagtggctcatg  3919600      <---------At4g35610      ----------->RAV1(2)      --------->At4g35610                                                  <------ZmHOX2a(1) -------->TGA2(2)                                                       ------>NtERF2 ------NtERF2                                                           --------->LBD16 ----------TGA1                   <------NtERF2                     ==============HOX2a_HOX2a -------ANAC58                   ------>NtERF2                      ------>ZmHOX2a(2) -------ANAC46                 --------->RAP2.6(3)                 <------ZmHOX2a(2) -------ANAC58          <---------ARR11(3)                         ===============HOX2a_HOX2a ------>TGA2(1)         --------->ARR11(3)                  ======================HOX2a_HOX2a -------TGA2(1) --------->ANAC46--------->ANAC46            <------ZmHOX2a(2) -------bZIP60(1)      --------->YAB1                 <-----------HVH21--------->DEAR3(1) ------>bZIP60(1)     ----------->ARR10   <-------GAMYB   --------->At4g35610<---------HSFB2a(1)    <   gcgtcatcatctgatcacacggcgaagataatcgacggcaaggcgattgctcataccatcagatcagagatcgccgaggaagttcgcggtctatctgaga  3919700             --------->ANAC46             --------->ANAC58             --------->ANAC58          <---------WRKY12      --------->ANAC58      --------->ANAC58 --------->ANAC46                                                      <----------DOF2 --------->ANAC55(1)               ------>ZmHOX2a(1)                <---------MYB52(1) --------->ANAC58        ------->TEIL  <---------ICU4          <-----------GT1         --------->ZAT6 --------->ANAC58     <---------YAB1   --------->YAB1     <---------YAB1         <---------YAB1 ---------LBD16 ------->TEIL   <---------ZAT18         ------>ZmHOX2a(1)  --------->YAB1   aacacggcaaggtaaacgcatcttatgaatcagtgtcctaatcttgacatgtctctccttataattctccgttcttttataagatgatagcactattgaa  3919800                    ----------->GT1                  --------->YAB1                   <---------TOE1(3)              --------->YAB1                              <------               <---------DAG2                    <---------YAB1                               -------               <----------DOF2               --------->ZAT2                          <---------WRKY12        <----------DOF2                      --------->At4g35610                   <-----------HVH21 <-----------GT1   <---------TOE2(3)      <---------At4g35610                     ----------->GT1   aatttactctcttttagctttatggtttaaaatgactagatttaagcagctatgatcacaaccttctattgaaaatgcttaacagggtcaaatgtaagct  3919900                                              <---------ANAC46                                             ------>NtERF2           <---------ZAT14                <---------ZAT2    <---------O2                     --------           <------ZmHOX2a(2)              <---------At4g35610                                <-------          --------->ARR11(3)              --------->ZAT2<---------------AGL15               <--------        --------->MYB59        <---------TOE1(2)        --------------->AGL15  <---------AHL20(2)  <- ---At4g35610     <------------------------ANAC81  <----------DOF2       --------->TOE2(3)  <-------- -->At4g35610    <---------MYB52(1)       --------->At4g35610            --------->YAB1   <---------ANAC46   ccattttagttagatcactgttattttgtttcgctggatttttgagctgcctgcattacttcaagtggcatactatcttatttatacagatagtgtgtgc  3920000  Previous    Next  AGI:  At3g12280.1    Description:  RBR1 (RETINOBLASTOMA-RELATED 1). similar to retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] (GB:AAF61377.1); similar to retinoblastoma-related protein [Medicago sativa] (GB:AAY23367.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43963.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Retinoblastoma-associated protein, B-box (InterPro:IPR002719); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Retinoblastoma-associated protein, A-box (InterPro:IPR002720); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 3913419    to: 3919140    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12290.1    Description:  tetrahydrofolate dehydrogenase/cyclohydrolase, putative. similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39977.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672) Range:  from: 3919509    to: 3921526    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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