Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              --------->DAG2                                                        =============================================                                      --------->At4g35610  ---------->DOF2          <------ZmHOX2a(2)                 <----------DOF2      <---------ZAT2    <-----------------AGL2  <-------TEIL        --------->At4g35610           --------->ZAT2    ----------------->AGL2 --------->CCA1(2)        <---------At4g35610 --------->ANAC46            ----------------->AG   --------->ARR14(1)   --------->ALFIN1         --------->ANAC58            ----------------->AGL1--------->ARR14(2)   <---------REM1(1)   --------->MYB46(3)             --------->ANAC58        --------->ARR11(1) ->ANAC58      <---------At4g35610    <---------At4g35610<---------------AGL15<---------ARR14(2) ->ANAC58      --------->At4g35610 ---------->DOF2    --------->ANAC58      ----------->ARR10 ->ANAC46 <----------DOF2   --------->ANAC58          --------->ANAC46 ---------->DOF2           ----   agaaggtgtaagctttcagctttcaacaacactcaaacaaagctgacaataaatccaagccaaaagtggaatagaaagcagatacgatcagattaacaaa  3910000                           ------->GAMYB                          --------->MYB46(3)                          <---------ATHB12                         ------>MYB46(1)                         --------->ANAC58                         -------->P                 <------MYB46(1)                 <------MYB83                --------->MYB111(1)                                                      --------->ANAC55(2)                --------->MYB59 --------->ANAC58                                         <---------ANAC55(2)                <---------MYB46(3)             --------->ANAC58                          <---------ANAC46                --------->MYB111(2)            --------->ANAC58                       <---------PCF2                --------->MYB46(2)      ----------------->AGL1                        --------->ARR14(2)      <---------At4g35610------>MYB83   <-----------------AG                     ----------->RAV1(2)      --------->At4g35610--------->ANAC58<---------------AGL15                   --------->ZAT2------ ========================================================MADS_MADS   --------->DEAR3(1) <-------TEIL ----->YAB1  --------->ATHB12   --------->ANAC58         <----------DOF2       <------ZmHOX2a(1)  ---   tataaaacagctcattgtttggtagccaaccaagacgcattagccaaacaaggaaaatgctttcaatttcgccatcgcataggacctgggtccgtattaa  3910100                                                           <---------ZAT14                                                     <---------ARR14(2)                                    ===============MYC_MYB <---------ZAT2                                    <---------ANAC46 ------->TEIL                                    <---------bZIP60(1)    <---------At4g35610                ------>NtERF2                                    <---------TGA1a  <---------ARR11(1)                      --------                              <---------DEAR3(1)     --------->GLK1(2)                       <-------                      --------->TOE1(3)              <-----------ARR10                 <------ZmHOX2a(1)           <---------TOE2(3)--------->ARR14(2)       --------->ARR14(2)       <---------ZAT2 --------          --------->MYB52(1)<---------ARR14(2)      <---------ARR14(1)        --------->ZAT2 --------     --------->AHL20(2)    <------ZmHOX2a(1)<---------MYB52(1)                --------->At4g35610 ----------->GT1      --------->TOE2(3)    <-------GAMYB   --------->At4g35610<---------At4g35610 <---------ZAT6     ------->TEIL    --------->bZIP60(1)    --------->ZAT2    --------->ARR14(2)  ---- --->WOX13(1)  ---------->DOF2------>ZmHOX2a(2)     <---------GLK1(2)   --------->MYB52(1)   -------- ------>YAB1   ===============================bZIP_DOF     --------->ZAT14   <---------ARR14(2)  <---   tcagagttaaattaagggaaagtaccttaggatcggtgatgtgagcgttattccgaatctgagcagagatagcatagcggagctgagaaggagcgacgac  3910200                                                                                  <-----------TGA1                                                                                  <-----------HVH21                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                            <---------At4g35610                                                                            --------->ZAT2                                                                            --------->At4g35610                                                                            <---------ZAT2                                                                         --------->DEAR3(1)                                                                        <------NtERF2                                                                        --------->ATERF1(1)                                              <---------At4g35610      <---------ERF1                                     ------>ZmHOX2a(2)                 <---------ATERF1(1)                                    <------ZmHOX2a(2)                  ------>NtERF2<-----------RAV1(2)                                    --------->CCA1(2)                  <---------DEAR4(2)                                   --------->AGP1                      <---------RAP2.3(1)        ----------->GT1            --------->ARR14(2)                 <---------DEAR3(1)    <---------YAB1                 <---------ARR11(3)                 <---------ANAC46 ->bZIP60(2)                       <---------AGP1  ---------->DOF2    --------->DEAR3(1) --bZIP60(1)                <------NtERF2     <---------ZAT2          <---------RAP2.3(2) ->ANAC58                 <---------ANAC46    --------->At4g35610     <---------RAP2.3(3)     ------>NtERF2 ->bZIP60(1)              --------->ALFIN1    <------NtERF2           <---------RRTF1(3)     -------- ----->ARR11(3)         <---------MYB46(3)    --------->ZAT2         <---------ABI4(1)   <-------TEIL ->ANAC58              <---------AtMYB61  --------->ANAC46          <---------ATERF1(1)<---------GLK1(2) ------ARR11(3)     --------->ICU4 --------->ARR11(3)              --------->ANAC46<---------MYB52(1)   atcttgaagattgtaaatgtccatgatggtggggatagatctacaggcagctctaaagaaatcgaaaacacggcggcgagcttccgtcaggttcgccgag  3910300                                     <------NtERF2                                   <---------ATERF1(2)                                   >>>>>>>>>AtERF-4                                   >>>>>>>>>AtERF-3                                   <---------bZIP60(1)                                   --------->DEAR3(1)                                   --------->RAP2.3(3)                                   --------->ATERF1(2)                                   --------->RRTF1(3)                                  --------->ATERF1(1)                                  <------NtERF2------>ZmHOX2a(2)                                  --------->RRTF1(1)                                  --------->RAP2.3(1)                                  --------->ERF1  --------->ANAC58                                  --------->ORA47(2)                                 ------>NtERF2 ==================================HOX2a_HOX2a                                 <---------ATERF1(1)                       --------->ANAC46 --------->ICU4                    ---------->CDC5--------->RAP2.3(2)                   ------>ZmHOX2a(1)------>NtERF2 --------->ANAC46          ----------->RAV1(2)                  --------->TOE2(3)--------->RAP2.6(2)                    ------>ZmHOX2a(1)    <------ZmHOX2a(1)---------->DOF2<---------RAP2.6(3) ----------->GT1------>MYB83            ------  <---------TOE1(2)===================================HOX2a_HOX2a      ------>MYB46(1)       -------- ->DEAR3(1) <---------GLK1(2)<-----------RAV1(1)  --------->ANAC58<-----------GT1     ---------->DOF2   ttcggaggaacaccgattttcctcaacgcgaatggtgccgccattttgatctacgaaatcgaaaaatttcaccttcctgcctgagattaaaagagaaatg  3910400                                          --------->LBD16<---------bZIP60(1)                                     <---------ANAC58    --------->O2                                     <---------ANAC58    <---------O2   --------------->AGL15          <---------WOX13(1)     --------->bZIP60(1)   <---------------AGL15        --------->ATHB12      <---------ETT(2)  ----------------->AGL1    <---------ARR14(2)     ----------->HVH21  ----------------->AGL3   *TSS<---------YAB1    --------->At4g35610 --------->At4g35610 <---------At4g35610 <---------HSFB2a(2) --->ICU4            --------->At4g35610 --------->HSFB2a(2) <---------DEAR3(2)         <-----------TBP ->CCA1(2)     <---------MYB52(2)<------------CBF<---------At4g35610                  <----------DOF2   agtagccgaatagagaaacaaacatctgactatctgattgcttccagagttatctgacgacgtcgtttcgaagtgagtggctaatgggctttttatgggc  3910500                                  <--------P                                 <---------MYB52(1)                                --------->LBD16                              <---------LBD16                            <-----------GT1                         <---------ICU4                         --------->ATHB51                         --------->AHL20(2)                                             <------NtERF2                         <---------AHL20(2)                     ----------->GT1        --------->LBD16                        --------->ICU4           --------------->AGL15                 ------>NtERF2                     --------->ICU4 ----------->ARR10--------->DAG2                   --------->DEAR3(1)                   ----------->GT1<---------MYB52(1)---------->DOF2                  <------NtERF2                   --------->ANAC46 --------->MYB52(2)  ----------->GT1              <---------LBD16      <---------REM1(1) <---------YAB1           <---------------AGL15             --------->ANAC46 <---------ZAT2    --------->RAP2.6(2)          ----------------->AGL1            <---------LBD16 --------->At4g35610<---------RAP2.6(3)         <-----------------AGL1     <-----------GT1 --------->ALFIN1 <---------At4g35610--------->At5g28300         ----------------->AG<------------CBF------>NtERF2   <   ctaagctgatgtagagaatagccgtaattatttccggttagtttcggtttacaaaaaagggtaagaaggtaattgtttttctatcccgccggggtgtctc  3910600                                                             <---------REM1(1)                                                     ----------->RAV1(1)                                                    ----------->HVH21                                                   <------NtERF2                                                   --------->RRTF1(1)                                                   --------->ATERF1(1)                                                  <---------RAP2.3(1)                                                  <---------DEAR4(2)                                                  <---------RRTF1(1)                                                  ------>NtERF2                                                  <---------ATERF1(1)                                                  <---------ERF1                                                 <---------RRTF1(2)                                                 <---------DREB2C(2)                                                 <---------RRTF1(3)                                                 <---------ANAC46                                       <----------DOF2     --------->YAB1                                     <---------YAB1--------->RAP2.3(1)                                    <---------ARR11(3)<------NtERF2                                  --------->DOF5.7(2)------>NtERF2                                  <---------MYB52(1)--------->DEAR3(1)                                 <-------GAMYB   <---------RAP2.3(3)                               --------->RAP2.3(1)<---------ORA47(2)              <---------ZAT14                               <------NtERF2     <---------RAP2.6(2)     --------->GLK1(2)                              ------>NtERF2      <---------DEAR3(1)     <---------GLK1(2)                              <---------RAP2.3(1)<---------ATERF1(2)    <---------ARR14(2)                             <---------DEAR3(1)  --------->ATERF1(2)    --------->ARR14(2)        ---   --------->TOE2(3)  --------->ARR11(3)         <---------RAP2.3(2)--------->ANAC58             >>>> ----------DOF2       <---------ARR11(3)*TSS    --------->RAP2.6(3) --------->ANAC58      <------ZmHOX2a(1)   cgctttcttaaacctctctcttaagaacttggcgccgttatctttctcatggcggcgacaatggtgaagcacgagattctcaactacagcgaggatgaag  3910700                                                                           --------->ALFIN1                                                                          <------ZmHOX2a(1)                                               <---------ICU4           --------->ALFIN1            <                                              <---------YAB1           <------ZmHOX2a(1)            -                                            --------->YAB1           --------->ALFIN1               -                                      <---------At4g35610           <------ZmHOX2a(1)   ----------->TGA1                                      --------->At4g35610         --------->ALFIN1<---------YAB1----- -------->GT1        <---------ARR14(2)    <---------YAB1      <------ZmHOX2a(1)<------ZmHOX2a(1)  <- >>>>>TBF1        <------ZmHOX2a(1)---------->DOF2          <------ZmHOX2a(1)<------ZmHOX2a(1)  -----   aagaaaattactcagacgaaggagattggggagactggaaagctgatgataatggtatagaaggaggagaggaggaggaggaggatgatggtgacgactc  3910800                                                                                 <---------GLK1(2)                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)    <------------------------ANAC81                                           --------->ANAC58 <---------At4g35610                                                     --------->ANAC58 ---------ARR14(2)                                <-----------GT1        --------->ANAC58 -------->ARR14(2)                         ------>ZmHOX2a(1)             --------->ANAC46 -------->GLK1(2)                        <---------ANAC58          <---------ANAC46        <---------AtLEC2 ---->ANAC58                             <---------ANAC46        <-----------HVH21      <----------DOF2 --------GLK1(2)                         <---------ANAC58      <<<<<<<<<TAC1  --------->ANAC58 ---->ANAC58            <---------YAB1 <---------ARR14(2)    --------->ZAT6  <---------LBD16   ggaatctgattttctgtgtttgttttgtgattctcacttcgtttcctgtgatttactcttcgaacactgtcgtctaagccacggattcgactttcatgga  3910900  Previous    Next  AGI:  At3g12260.1    Description:  complex 1 family protein / LVR family protein. similar to Os07g0640100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42797.1); contains InterPro domain Complex 1 LYR protein (InterPro:IPR008011) Range:  from: 3908947    to: 3910427    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12270.1    Description:  methyltransferase. Identical to Probable protein arginine N-methyltransferase 3 (PRMT3) [Arabidopsis Thaliana] (GB:Q0WVD6;GB:Q9C7D0;GB:Q9LHH9); similar to protein arginine N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G19670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42802.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) Range:  from: 3910640    to: 3913336    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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