Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <------ZmHOX2a(1)            <---------At5g28300                                <---------At4g35610               <-----------GT1                     <---------ANAC55(2)      <---------YAB1   --------->ARR11(3)                --------->ANAC58<---------ZAT14                <---------ARR11(3)                --------->ANAC46--------->ZAT14                <---------ARR14(2)   <-----------GT1   --------->ANAC55(2)      <---------TOE2(3)--------->ARR14(2) --WOX13(1)     --------->ANAC58--------->At4g35610     ---------->DOF2                     ---------   ttttatttcagttcaaacaagtcacttaatattctgcagaggaatattaagaatgagtaaaagaagatttaccgttctcatatataagaccagtgaaaga  3898600                                                                                                    -                                                                                                 ----                                                 <---------WOX13(1)                        <---------At4g35610            ------>ZmHOX2a(1)         <-----------------AGL2                          ------>ZmHOX2a(2)        <---------ARR14(2)            <-----------------AGL3                          ===============   -------->P <---------ALFIN1      <---------ARR14(2)     --------->ARR14(2)       --------->ARR11(3) ->DOF2 --------->ARR14(2)          --------->ARR14(2)     <---------ARR14(2)       <---------ARR11(3)   agagcaaccaggtcctccacttagccagagaagaagagggtctgtttttggattgctctcagatttgatgaagtagtagaacatttgatcttcatcttcc  3898700                                                                                                  ---         --------------->AtSPL8                                                                <-----   -------->P------->TEIL                                                                   ---------   ------>MYB83           <-----------GT1                                                   <--------   ------>MYB46(1)  --------->ICU4                                                        --------->LBD16  ----------->RAV1(1)--------->ATHB12                                                   <---------LBD16 --------->AtMYB61  <---------ATHB12                                               <---------MYB52(2) -------->MYB46(3)  <---------YAB1                               ----------->GT1   --------->MYB46(3) -->ZmHOX2a(1) --------->TOE2(3)            <---------ZAT14     --------->DAG2  <------ZmHOX2a(1) <-- ===HOX2a_HOX2a--------->TOE1(3)        --------->HSFB2a(2) --------->YAB1      <----------ID1 <-----   tcaccaacaccaatgtaccttaatgatttaactccaaaacttagagaacacagagtcatacatcataaggctaatatgaagaggaacaaacccggtttcg  3898800                                                                                             --------                                 <---------CCA1(1)                                         <---------At4g35610                                 <---------RVE1(1)                                         --------->At4g35610 ------>ZAT2                    <---------ARR11(3)                                         --------->ZAT2 ----ANAC58                     --------->ARR11(3)                                      --------->ZAT2 >ARR14(2)                      <---------ARR14(2)                      ------->GAMYB   --------->At4g35610 -ARR14(2)                    ----------->ARR10                       --------->At4g35610 ----------- -------ZAT2                <------ZmHOX2a(1) --------->ARR11(3)    <---------WRKY38(1) <---------At4g35610 ----ANAC58              <---------LBD16<---------YAB1 --------->YAB1----------->RAV1(1)<---------ZAT2   agctcgaagggaagagggccttcaaaaccaggaagatatttgatgatagaacttgaatcagcatgcttagtcaacagaagcacaagttgcagcagcagca  3898900     --------->ARR14(2)     <---------ARR14(2)                                                                            --    --------->GLK1(1)                                                                              <-    <---------GLK1(1)                                         <----------DOF2         <---------WRKY18(1)  <---------ANAC58                                         <---------ARR11(3)        --------->WRKY38(1)  <---------ANAC58        <---------ANAC58                 --------->ARR11(3)        --------->WRKY12 ->RAP2.6(2)         <----------DOF2              <----------ID1                     --------->WRKY45 >RAV1(1)    ------->TEIL <---------ANAC58      ---------->DOF2                     --------->DOF5.7(2)   acttgggtatccatgaacccattctttttcttgtcttaagtttttgagtttaaagacaaaacatctttatcttggaaaacagagacgttgacccaaacaa  3899000                                                                                               ------                                                                                             --------                                                                                             ========                                                                                             <-------                                                                                             ========                                                                                             <-------                                                                                             --------                                                                                            ------->TEIL                                                                                            ---------                                                                                         --------->AtLEC2                                                                                  ------->MYC4<------                                                                                  <-------PIF5<------                                                                                  ------->PIF5<------                                                                                  ------->MYC2-------                                                                                  <-------MYC2-------                                                                                  <-------PIF4-------                                                                                  <-------MYC3<------                                                                                  ------->MYC3-------                                                                                 --------->ANAC58                                                                                 ====================                                                                                 <---------TGA1a                                                                                 --------->TGA1a                                                                                 ====================                                                                                 ====================                          *TSS      ----------->GT1                              <---------ANAC55(2)                         <---------ANAC55(1)                                     --------->ANAC58          <----------DOF2<---------ANAC58                                        --------->ANAC55(2)    <XXXXXXXXXXXXXXXXXXXXMIR1887 <---------At4g35610                            ------------>OsbHLH66  <----------DOF2        <---------ANAC58                                      <------------OsbHLH66 ------->ARR11(3)        <---------ANAC46   --------->AHL20(2)      --------->YAB1<-------MYC4<------ --------ARR11(3)   <---------MYB46(3)  ---------->DOF2            ----------->GT1------->PIF4-------   acatcttttagtctttgtttagttgttccgtctgcaactggttaaagaaaataaaactaggtttttgaaatgaaaatttgagcacgtgatcatgcacgtg  3899100 <----------ID1 --->ALFIN1                                 --------->DEAR3(2) ->O2---------->DOF2                      <---------PCF2 ===============bZIP_DOF                 ----------->HVH21 --O2==========================================bZIP_DOF ===============bZIP_DOF               --------->ALFIN1 --TGA1a                              <-------PIF4 ->TGA1a                              <-------MYC3 --->OsbHLH66                         ------->MYC4 -MYC4                                <-------PIF5 -PIF4                                --------->TOE1(2) -MYC2                                ------->PIF5 >MYC2            --------->DAG2      ------->MYC2                                   <---------TOE1(3) >MYC4           ==============================bZIP_DOF                              <---------TOE2(3) >PIF5           ---------->DOF2      <-------MYC2                              <---------ZAT6 -PIF5        --------->ANAC58        <-------MYC4                             <---------YAB1 >MYC3        --------->ANAC58        ------->MYC3                   --------->AHL20(2) ===============bZIP_DOF              ------->PIF4                   <---------AHL20(2) ==bZIP_bZIP --------->LBD16         --------->TGA1a      <-----------GT1    --------->YAB1 ===============bZIP_DOF             <---------TGA1a  <---------AHL20(2)     --------->ATHB51 -MYC3      <---------ANAC46         --------->O2    <---------AHL20(2)      -------->ATHB1 >PIF4     <---------LBD16           <---------O2    --------->AHL20(2)     <---------YAB1   gaagggacaaagtcgcgcgtaaagtgttttgcagtttgcacgtgggacagacgaattaattttcaacttatttaaactattattgttaaggttagcatct  3899200                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                    ---------->DOF2                               ---                                             <---------ETT(2)                                     <--                                             --------->ETT(2)                                     <--                                         <---------TOE1(3)               ---------->DOF2         ----                    --------->YAB1       <---------TOE2(3)       <----------DOF2             <-------   ctgtataagttttaagtgagaataatacttctgtataagtcttaaggtagacataaaagggtgccttcttttgatcaaagtactagagaaaacagtagtt  3899300           <----------DOF2        <-----------GT1 -------ANAC55(1) -------ANAC55(2)                                                                               ===== -------ANAC58                                                                                  <---- ------>ANAC55(2)                      --------->YAB1                                           <---- -------ANAC46              <-----------RAV1(1)                    ----------->GT1         ------>MYB46(1) -------ANAC58             <---------TOE2(3)                    --------->At4g35610        ------>MYB83 ----->MYB59    <----------DOF2       <---------YAB1          <-----------RAV1(2)      >>>>>>>>>>MYB80 --MYB46(3)<---------DAG2 --------->YAB1        ----------->GT1 <---------At4g35610   XXXXXXXXXXXXXXX   acgtagacattaacttttctttggtctataatgttgtcttatgataaacagtgtaacattgacttcagatgggaaaactatatatatcaaaccaaacact  3899400                           --------->O2                           ====================bZIP_DOF                           <---------O2                           --------->TGA1a                      --------->ANAC58                      --------->ANAC58                   <------ZmHOX2a(2)         --------->TOE2(3) <---------TGA1a     --------->REM1(1)--------->ANAC46      --------->WRKY38(1) ====================================bZIP_DOF<---------WRKY18(1) -----DAG2        <---------ARR11(3)        --------->WRKY45 ------DOF2       --------->ARR11(3)        --------->WRKY12 XXXXX>MIR407  --------->YAB1       ---------->DOF2     <---------ALFIN1   tttggcttcaacatcaataagatcaccccaagtgtgtttaaagaggttgaccacttatccacctcttgaacaagattgaattctcttctggtttatattc  3899500  Previous    Next  AGI:  At3g12220.1    Description:  SCPL16 (serine carboxypeptidase-like 16); serine carboxypeptidase. Identical to Serine carboxypeptidase-like 16 precursor (SCPL16) [Arabidopsis Thaliana] (GB:Q9C7D4;GB:Q9LHI4); similar to SCPL15 (serine carboxypeptidase-like 15), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G12240.1); similar to SCPL14 (serine carboxypeptidase-like 14), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G12230.1); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) Range:  from: 3896538    to: 3899026    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12230.1    Description:  SCPL14 (serine carboxypeptidase-like 14); serine carboxypeptidase. Identical to Serine carboxypeptidase-like 14 precursor (SCPL14) [Arabidopsis Thaliana] (GB:Q9C7D3;GB:Q9LHI3); similar to SCPL15 (serine carboxypeptidase-like 15), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G12240.1); similar to SCPL16 (serine carboxypeptidase-like 16), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G12220.1); similar to sinapoylglucose:choline sinapoyltransferase [Brassica rapa subsp. campestris] (GB:CAM91989.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) Range:  from: 3899438    to: 3901886    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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