Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->YAB1               <------ZmHOX2a(2)                                                         <----------DOF2              <---------ARR14(2)                                                         <---------DAG2     --------->GLK1(2)                                                           --------->HSFB2a(2)   --------->KAN4(1)                                                        --------->HSFB2a(1)   --------->MYB46(3)                                                       <---------HSFB2a(1)   --------->HSFB2a(1)                                                      <---------HSFC1(2)   <---------KAN4(1)    <-----------HVH21                            ---------->DOF2  ------>NtERF2   <---------HSFB2a(1) <----------DOF2                        ------>ZmHOX2a(2)  <---------HSFB2a(2)  <---------KAN4(2)   <---------DAG2                      <---------YAB1    <---------ZAT2 <--------- ------>AtLEC2--------->ARR14(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------At4g35610 ->ANAC58   <---------DEAR3(2)      ----------->HVH21   <---------ANAC58    --------->At4g35610 ->ANAC58 <---------MYB52(1)       <-----------HVH21    --------->YAB1      --------->HSFC1(2)------- >DOF2   <-----------HVH21      ----------->RAV1(2)     <---------ANAC58   ----------->ARR10  -------   atggaacaatccgtcggatcatcacctttcagtcccctgtgactcatcttcttcactatcgtgatcggatggaaaggaagcttcgcgacgactttacctt  3834700                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                       --------->LBD16                                                      <---------ANAC46                                                     <---------LBD16                                                     --------->RAP2.3(1)                                                     <------NtERF2                                                     --------->ATERF1(1)                                                    <---------RAP2.3(1)                                                    <---------ERF1                                                    <---------RRTF1(1)                                                    ------>NtERF2                                                    <---------ATERF1(1)                                                   --------->DEAR3(1)                                                   <---------DEAR3(1)            ------>ZmHOX2a(2)                                                   <---------RAP2.3(2)          <------ZmHOX2a(2)                                                  --------->ATERF1(1)           <---------GLK1(1)                                                  --------->RAP2.3(1)           --------->GLK1(1)                                                  <---------ABI4(2)            <---------ARR11(3)                                                 ------->GAMYB                 <-----------ARR10                                                 <---------RAP2.3(1)           <---------AGP1                                                 <---------ATERF1(1)           --------->AGP1  ----------->GT1         <---------------------WRI1<---------RAP2.6(1)        --------->ARR11(3)   < --GT1                  <----------ID1          <---------DEAR3(1)             <---------ARR14(2)   < -->TOE1(2)        --------->LBD16            --------->MYB52(1)               --------->ARR14(2)---- -->TOE2(2)   --------->WOX13(1)           ----------->RAV1(1)           ----------->HVH21     <-----   cgaatagtgaattgagcaatccgaagacgacgaagagaaccagtgccacaacggcgccggatttgaacttgaagagtgacagatctcggctcgattcctt  3834800                                                               <---------GLK1(2)                     ------>ZmHOX2a(2)                         <---------ARR14(2) ---------At4g35610<---------ARR11(3)                 ----------->HVH21 ---------ZAT2     --------->ARR11(3)       <---------TOE2(3)  --------->ARR14(2) ------>DOF2    <------ZmHOX2a(2)       <----------DOF2 <---------TOE2(3)  --------->ATHB12 -----DOF2 --------->ANAC46    <----------DOF2      <----------DOF2       <---------YAB1   taagctggtttcaacgcgatcgatcttcttcgtctttgatttctttatggatagctttgacgatggattctctgtcttcattgtctcgagtttcttcgtg  3834900                                                     <-------TEIL                                          <--------P--------->CCA1(2)                                       --------->ANAC58                                             -                                       --------->ANAC58                                             -                                      --------->SPL7<------ZmHOX2a(2)                            ----                                  <---------------AtSPL3                           <---------ZAT14 --                                <---------ZAT2     --------->AGP1              <---------DEAR3(1)----                                <---------At4g35610<---------ARR14(2)       ------>MYB83      -------                                --------->At4g35610--------->ARR14(2)       ------>MYB46(1) <--------                      <---------ARR14(2) --------->At5g28300    <---------ANAC58   --------->ZAT14 <-                      --------->ARR14(2)----------->GT1         <---------ANAC58  --------->ALFIN1---          <---------ANAC46      --------->ZAT2     --------->ARR11(3)     --------->AtMYB61 ---------  <-----------HVH21<---------TOE2(3)<---------SPL7 <---------ARR11(3) --------->DEAR3(1)  <------ZmHOX2a(1)   gccttgtcaatggagtatttcaaggatttgtatgagctggtacggtagattaagatccatgagatggcttcgcagaccaacgcggtgcagaaggagattc  3835000         <---------TOE1(3)       ---------->DOF2      <---------MYB52(1)     <-------GAMYB -------->MYB46(3) ---------->HVH21 ----->TOE2(2) ------->SPL7 ----->TOE1(2)                                                  --------->LBD16 -->GLK1(2)               ---------->DOF2                      <---------ANAC46 -HSFB2a(1)          <---------ARR14(2)                   <-----------RAV1(1) --------TOE1(2)     --------->ARR14(2)               <------NtERF2 --->ZmHOX2a(1)   <---------ANAC46                  --------->ANAC46 >HSFB2a(1)  --------->MYB52(1)               --------->YAB1  <---------LBD16    *TSS  <-----------GT1   ctacgaccgttaagctatcggcgtatttgaaagaggcgaagagtggaatcgtagtcgccattgttgcgcaaacttgcagagattggatttgactgttcgg  3835100                                                                   ----------->GT1                                                              <---------LBD16                                                              --------->HSFB2a(2)                                                              <---------HSFB2a(2)                 ----------->GT1                             <---------ANAC46             <------ZmHOX2a(1)                               <---------LBD16       --------->ATHB12                                     <---------LBD16                     <----      <---------YAB1        ---------->DOF2       ---------->DOF2  <---------At4g35610       <-------    --------------->AGL15  <---------WRKY12  --------->AHL20(2)    --------->At4g35610       --------    <----------DOF2   ---------->DOF2  ---------->DOF2---------->DOF2       <-----------GT1 <--------   gtctcactttgattaggaatcgtagaaagtcaaaggagggcaaaagaataaataaagaaagtttcggggagcttaaatatacctccagtttccaatcttt  3835200                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                --------->ANAC46                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                              --------->ANAC58 -------GT1                                        --------->ATHB12        ------->GAMYB --ICU4               <----------DOF2        <-----------GT1           --------->ANAC46 ----------->GT1 ->YAB1            <-----------GT1           --------->YAB1    ----------->GT1<---------ALFIN1 -ATHB12 <---------ALFIN1         ---------->DOF2--------->GLK1(2)   <-----------GT1---------->DOF2   acaacattgccccaattgttttttctttataaaccaaaaaacccaaatcacaatctttggcaaaatagtttatacaacacacacaccaaagagttaatat  3835300                                                                                                <----                               ---------->DOF2                                                  -----                             <-------TEIL                                                    <-------     --------->At4g35610  ----------->GT1                                                    <-------     <---------At4g35610 <---------------AtSPL8                              <------ZmHOX2a(1) ------ --------->AtLEC2 ---------->DOF2                                    <---------ZAT14         <-------   gacatgcagatgtctatttacaaagaagaggtacaaaggagttttgagttgaagttagagaggtttaagagtgttcttaggagcacttatccatggagtg  3835400                                                                             <----------DOF2                                                                         <---------MYB52(1)                                                                       --------->YAB1                                                                       <---------ICU4                                                                      --------->MYB46(3)          <-----------ARR10                                           <---------ATHB12     ------->GAMYB                         <---------ANAC58          ------>MYB83  ----------->RAV1(1)                      <---------ANAC55(2)       -------->P -----ARR14(2)     --------->ANAC58        --------->ANAC55(2)       ------>MYB46(1) ---->ARR14(2)     --------->ANAC46        <---------ANAC58        <---------MYB111(1) --ANAC46 <---------ARR14(2)        --------->ANAC58               <---------MYB59             ------ --ANAC58 --------->ARR14(2)        --------->ANAC46               --------->AtMYB61  <---------ARR11(3) --->ALFIN1        --------->ANAC58 --------->ANAC58               --------->MYB46(3) <-----------ARR10 --ANAC58<---------CCA1(2)   <---------TOE1(2)                  <------ZmHOX2a(1)  <---------ALFIN1--   tctgcaacagcaaatctccacaaggcattcacatgttcaggcaatgcgtaatctatcccaacgcgaggaccaaccattactttctccacatcttctcctc  3835500                               <---------AHL20(2)                   ------>ZmHOX2a(1)      --------->At4g35610    <---------AHL20(2)    <---------GLK1(2)       <---------AHL20(1) <---------HSFB2a(2)        <---------ARR11(3)                                        <-------------- --------->HSFB2a(2)       <---------CCA1(2)                                         <-----------GT1 >ZmHOX2a(1)     ----------->RAV1(2)          --------->TOE1(3)                   --------->TOE2(3) ------->AtLEC2 ------>ZmHOX2a(1)         ---------->DOF2               <---------ARR11(3)          -   catccagaagctccagtcctcctgtgtccatatatttttagtacaaaagcttaaacactgtttgagagagacatggtcttacttcattaactattttggt  3835600  Previous    Next  AGI:  At3g12030.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06660.1); similar to fiber protein Fb27 [Gossypium barbadense] (GB:AAQ84318.1); contains InterPro domain Protein of unknown function DUF841, eukaryotic (InterPro:IPR008559) Range:  from: 3834367    to: 3835081    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g12040.1    Description:  DNA-3-methyladenine glycosylase (MAG). Identical to DNA-3-methyladenine glycosylase (MAG) [Arabidopsis Thaliana] (GB:Q39147); similar to putative DNA-3-methyladenine glycosylase [Oryza sativa (japonica cultivar-group)] (GB:BAD17141.1); similar to Os02g0774500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048275.1); similar to hypothetical protein OsJ_008271 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24788.1); contains InterPro domain Methylpurine-DNA glycosylase (MPG); (InterPro:IPR003180); contains InterPro domain Formyl transferase, C-terminal-like; (InterPro:IPR011034) Range:  from: 3835135    to: 3836839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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