Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <------ZmHOX2a(1)                <---------At4g35610                                                           -------                --------->At4g35610          <-----------RAV1(1)                             --------            <-----------HVH21               <---------TOE2(3)                               <--------        --------->ARR14(2)       --------->ARR14(2)                                 <-------TEIL        <---------ARR14(2)       --------->GLK1(2)                                 --------->DOF5.7(2)        --------->GLK1(2)        <---------ARR14(2)                               --------->TOE1(3)   attaatggagaatatgtcagaggacgagaagagagaatttggatttgatgttggaagcattaactggacggactacattacaaacgttcacattcccggt  3816900                                                                  <------ZmHOX2a(2)                                                             --------->GLK1(2)       <-----------GT1                                                            <---------GLK1(2)       <-----------GT1                       <---------ARR11(3)                --------->YAB1         <----------DOF2   <--                       --------->ARR11(3)              --------->MYB52(1)      <---------------------               ---------->DOF2                         ------>MYB46(1)       <-----------GT1--------- -->LBD16  <---------ANAC46                            ------>MYB83         <---------CCA1(2) <------ ->LBD16   <---------ANAC58         ------->TEIL     --------->AtMYB61   <----------DOF2<----------DOF2 -LBD16    <---------ANAC58    <----------DOF2       <---------MYB59     <------------------------ANAC81   ttaagaaggcatgtcttgaaaggaagagcttaactttgaatctcactaaaccagaccaaacagaatcgatcccttcttttatctttttatctttttcttt  3817000                                                    ----------->GT1     <---------ANAC58                           --------->ATHB51     --------->ANAC55(2)                        <---------ICU4     <---------ANAC46                           <--------ATHB1     <---------ANAC55(1)                        --------->AHL20(2)     <---------ANAC55(2)                     --------->YAB1      --------->ARR14(2)     <---------ANAC58       <---------AHL20(1)  <---------AHL20(2)--------->GLK1(1) ---------GT1               --------->AHL20(1) <---------ATHB51  <---------ARR14(2)           ------- ---ANAC81                  <---------AHL20(2) --------->ICU4  --------->LBD16    <---------TOE2(3) - ->ID1              <---------ANAC46      ----------->GT1    <---------LBD16<---------YAB1    <------ ----DOF2         <---------ANAC46    --------->ATHB12      --------->MYB52(1)<----------DOF2 -------   tttcattacgtgtaatcgtgttgtgtctaatatatcagtttgatttgtaataatttgaaaaaaaccggaaatgttgttatctttaagtttgcccaaaatc  3817100                                                                                         <---------AHL20(2)                                                                                      <---------ICU4                                                                                     --------->AHL20(1)                                                                                     <---------AHL20(2)                                                                                     --------->AHL20(2)                                                              <---------TOE2(3)      <---------YAB1                                                   --------->YAB1       ------->TEIL --------->ICU4                                                 <---------YAB1         <---------ARR14(2)                                                 --------->AHL20(2)     --------->ARR14(2)                                <-----------GT1  <---------AHL20(2)     <---------ARR11(1)<---------AHL20(2) -->GLK1(2)                 <---------TOE2(3)   --------->TOE2(3)      <---------ARR14(1)--------->AHL20(2) -------->YAB1              <---------TOE1(3) <---------AHL20(1)       <---------CCA1(2)<---------YAB1 ---ARR11(3)               ---------->DOF2    --------->AHL20(1)   <---------DOF5.7(2)-------->ATHB1 -->ARR11(3)        ---------->DOF2    ----------->GT1    <----------DOF2 --------->TOE2(3)   tatagtcatgttcgattcaagacaaagtttaaagttacaacctgtaaaaatattaatagtctttgatgtaaacgtatcttaaacaaaattattaaatgtt  3817200                          --------->AHL20(2)                -------->ATHB1                <--------HAHB4                --------->YAB1                                          --------->RVE1(1)                --------->ATHB51                                       <---------ARR11(3)                --------->AHL20(2)         <---------AHL20(2)          --------->ARR11(3)                <---------ICU4            <---------AHL20(2)         <---------AHL20(2)               <---------YAB1             --------->AHL20(2)        --------->AHL20(2)           ----               <---------ATHB51        --------->WOX13(1)          ----------->TBP               <---               --------->ICU4        <---------ATHB12            ------>ZmHOX2a(1)              <----           ------------>CBF          ------------>CBF      <---------WOX13(1)                 <------       >>>>>>>>>MYB98<---------TOE2(3)--------->AHL20(2)  <------------CBF         <---------ANAC58 *TSS   ----------->GT1<---------YAB1  <---------AHL20(2)     --------->ATHB12          <---------ANAC58--   gaagttagtaacatacaattattaatgaataaatgtttaatcaattaaatgtcatttagtgattgtcctataaaatctcttgttttcttgttttatatta  3817300 -------->CBF                                                                                       < ------YAB1                                                                                       <-- -------GT1                                                        --------->YAB1             <xxxxxx ---AHL20(2)   --------->TOE2(3)                       ---------->DOF2     --------->ICU4    -------- ------->WOX13(1) ---------->DOF2            --------->AHL20(2)   <---------YAB1        --------->YAB1   tcaatcttacatccaaaacttaaagtattcttacatccaaaaacaaaaaaaatatggcaaagtctcttctcatagtaatgctcatgtctatagtaatgtt  3817400                                                                     <-----------ARR10              -                                                                     <---------ARR11(1)             -                                                                     <---------ARR11(3)             -                                                                     --------->ARR14(2)             <                                      <<<<<<<<<<AGL20                <---------ARR14(2)             <                                      <<<<<<<<<<AGL22               <---------CCA1(2)               -     <---------ANAC58                 <<<<<<<<<<AGL24  ---------->DOF2                              <     <---------ANAC58             ----------------->AGL3      ----------->HVH21                     < ---------AtLEC2             --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <----- ---------GT1             <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <------- xxxxxxxxxxxxxxxxsmallRNA(si3)<---------AHL20(2)  <---------bZIP60(1)--------->ARR11(3)    <---------TGA2(2) ->ICU4                   --------->AHL20(2)   --------->ALFIN1<-----------GT1         <---------YAB1   ttacatggctcgtccaattttctcccaaaaaattaatccatatttagaggtgatgccaaaagatgtgaccatatctccatcttcaaattttgattacgtc  3817500            <---------At4g35610            --------->At4g35610           ------->TEIL     --------->LBD16 -------->At4g35610 -------->HSFC1(2) -------->ZAT2 ---------ZAT2                                              <---------ANAC58 ---------HSFB2a(1)                   --------->ANAC58      <---------ANAC58                    <---- -------->HSFB2a(1)                   --------->ANAC46     --------->ZAT2                       <---- ---------At4g35610                   --------->ANAC58     <---------At4g35610    --------->MYB52(1) ---------HSFC1(2)         --------->At4g35610       <---------bZIP60(2)--------->ATHB51        <---- ----------------WRI1      <---------At4g35610    ----------->HVH21    --------->ICU4 --------->At4g35610 --ANAC46---------->DOF2  --------->GLK1(2)    ---------->TaMYB80      <---------YAB1 <---------At4g35610   gaagctcccgatgaagctccattcgaagaagctgattcaccagcaatggaatatgacatggagcttgctcaccattattcggacaaacagctcaagtttc  3817600                                                                                                  ---                                                                                                  ---                                                                                                  <--                                       <---------TOE2(3)                                      <xxxxxx   <---------ANAC58               --------->ARR14(2)                                        <--------   <---------ANAC58               <---------ARR14(2)                                        <-------- -----ANAC58                    --------->LBD16                                    <------ZmHOX2a(1) -----ANAC46               ---------->DOF2                                      xxxxxxxxxxxxxxxxxxxxx -----ANAC58 ---------->DOF2  <---------LBD16         ----------->GT1    <---------ICU4     <--------   ttgaggcttgctctgaaaagccgagttcaaaatgcggaaatgaggttttcaagaacatgttaaatgagacgatgctaattacagaggaatgttgtcgtga  3817700 ------>AHL20(1) ------>ARR11(3)                             <---------ARR14(2)     <---------AHL20(1) -------AHL20(1)                 <------MYB46(1)                    --------->ARR11(3) xxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------MYB46(3)                 --------->AHL20(1) -ANAC46                         ----------->GT1   ----------->RAV1(1)     ------->TEIL -ANAC58          <---------WOX13(1)         <---------ICU4      <---------AHL20(2)         --------- x>smallRNA(se3)--------->ATHB12 <------MYB83--------->ARR14(2)  --------->AHL20(2)       ---------->DOF2 -ANAC58       --------->ICU4<------ZmHOX2a(1)  <-----------GT1 --------->YAB1 --------->MYB52(1)   tatattgaagatgggcaaagattgccatctaggattggttaaactcatatttgccacatatgagtataaaaatattgcatctaagggcattccaaagagc  3817800  Previous    Next  AGI:  At3g11980.1    Description:  MS2 (MALE STERILITY 2). Identical to Male sterility protein 2 (MS2) [Arabidopsis Thaliana] (GB:Q08891;GB:Q9LHM3); similar to male sterility protein, putative [Arabidopsis thaliana] (TAIR:AT3G56700.1); similar to male sterility protein 2 [Brassica napus] (GB:CAA68190.1); similar to male sterility 2 [Brassica rapa subsp. chinensis] (GB:ABO14927.1); similar to male sterility protein 2-2 [Brassica napus] (GB:AAZ06658.1); contains InterPro domain Male sterility (InterPro:IPR004262); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Male sterility, NAD-binding (InterPro:IPR013120) Range:  from: 3814242    to: 3817123    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g11990.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45190.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502) Range:  from: 3817300    to: 3817952    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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