Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                <---------ZAT14                                                              --------->ZAT14                                                          <---------ICU4                                                         <---------ATHB12                               <---------MYB46(3)      --------->WOX13(1)                              <---------WOX13(1)     --------->WRKY18(1)        <------MYB83        <                             <---------ANAC58      <------MYB83                 <------MYB46(1)    --                             <---------ANAC58      <------MYB46(1)              ----------->GT1  <---       <----------DOF2      --------->ATHB12     <---------WOX13(1)            --------->MYB59   <--- -----ATHB12               <---------YAB1       --------->ARR14(2)         --------->DAG2       <---- ---->ICU4              <---------ANAC46        <---------ARR14(2)        ---------->DOF2       <----   gactaaattctttgcagagtttaatggtgttgattgttgaaacaagagcagattggtcaatcactgcagaaaaaaaaaaagttggtaacatgtaagttta  3813800                   ------>ZmHOX2a(2)                 <-----------ARR10                 --------->ARR14(2)                 <---------ARR11(3)         ---------->DOF2     --------->AHL20(2)     <---------AHL20(2)      --------->HSFB2a(2)  <---------ICU4    --------->AHL20(2)       <---------HSFB2a(2)  --------->YAB1 ---------MYB52(1)<------ZmHOX2a(2)          <---------AHL20(2) ------->TOE2(3) --------->GLK1(2)          <---------ICU4 ------TOE1(3)   --------->ARR11(3)        --------->ICU4 ------TOE2(3)   <---------AGP1          --------->YAB1                         <---------ARR11(3) -----DOF5.7(2)  <---------ARR14(2)     <---------YAB1            ------>ZmHOX2a(1)   <---------ANAC46 -------GT1     <------ZmHOX2a(1)---------->DOF2 <---------YAB1  --------->TOE2(3)    ----------->GT1   acgttatttaataaaggaggatctaagttttctacaaaagctataatttttatgatgaccatataatcctcaaacccttcaagatgtgatgtgaattatc  3813900                             <---------TOE1(3)  --------->MYB52(2)                             <---------TOE2(3)------>ZmHOX2a(1)                      <---------CCA1(1)       <---------MYB52(1)                      <---------RVE1(1)      --------->TOE2(3) --------->YAB1                --------                     --------->ARR11(3)      --------->TOE1(3) --------->ATHB12    <---------AHL20(2)                     <---------ARR11(3)   <-----------GT1      -------->HAHB4   --------->AHL20(1)               --------->CCA1(2)  --------->MYB59             <---------YAB1    <---------AHL20(1)  <         --------->ANAC46   ---------->DOF2<---------YAB1--------->TOE2(3)      <---------ARR11(3)  <   taaatcccaacacgaagaaatgagattttttaaagttagctatttatccttagttgatttcttaattataggttaatggcaatattttttgaaactgata  3814000                                         <------ZmHOX2a(1)                                    --------->ALFIN1                                   <-------MYC3                                   ------->MYC2                                   ------->MYC3                                   <-------MYC2                                  <---------O2                                  <---------ANAC58                                  --------->TGA1a                                  <---------TGA1a                                  --------->ANAC55(2)                                  <---------ANAC58                                  --------->O2                                  <---------ANAC46                                  <---------ANAC55(2)                                 ------------>OsbHLH66      ======================================bZIP_DOF                              <---------AHL20(2)      <----------DOF2   <---------HSFB2a(2)    ----------->GT1                  <----------DOF2 ->YAB1       <-----------GT1 --------->ARR11(3)  --------->AHL20(2)    --------->DAG2              - ---------ANAC58        --------->HSFB2a(2)   ----------->GT1          --------->SPL7   <-----------GT1 ---------ANAC58    --------->GLK1(1)--------->REM1(2)             <---------------AtSPL3 --------->ANAC55(2)   atgcgtttcttttttttttctgaattctagatgatcacgtgtaggaaactgataaaatgttggaaagaattcgtaaggcaatcttttatttcacttgatt  3814100                                                                  <---------ATHB12              <---------ANAC46                                   ------>MYB83        --------->AHL20(2)                                    --------->MYB46(3)        <---------AHL20(2)                                    ------------>CBF    --------->AHL20(2)                                       -------->P                         -----   <---------AHL20(1)                       <----------DOF2 --------->MYB52(1)                  -----   <---------AHL20(2)                --------->YAB1       <---------MYB52(2)       --------->YAB1 <--   --------->AHL20(1)              <-----------GT1  ------>ZmHOX2a(1)        ------>ZmHOX2a(1)<------ -------->AHL20(2)          <------ZmHOX2a(1)    ---------->ID1  ------>MYB46(1)  ----------->TBP <--   tttaaaatatttatttgcctataaaacagaggaagtttttcatcatcttttgtccttagaactaaccaatctttcattcctcttataaaaacaaaaccta  3814200                                          *TSS      <---------CCA1(2)             --------->AHL20(2)      ---------->ID1                <---------AHL20(1)  <---------ANAC58                  <---------AHL20(2)  <---------ANAC58               <---------ICU4 ->MYB83       --------->YAB1   <---------ATHB12                                     <-----------RAV1(1) ->MYB46(1)    --------->TOE2(3)<---------AHL20(2)                         <---------ANAC46 --------DOF2  --------->TOE1(3)--------->AHL20(2)                         <---------ANAC55(2) ---MYB59    <---------TOE2(3)  <---------ATHB51                 <----------DOF2--------->KAN4(2) -------DAG2 <---------TOE1(3)  --------->ICU4         --------->ANAC55(2)--------->MYB59          --   ctttacttgtctcttaacgataacaaaataacaaataattaattctgttcttggtttacttaatcttctttctagttaagtatattcttgttgctcatca  3814300                                                       <---------HSFC1(2)       <---------AHL20(2)                                                       --------->HSFC1(2)      --------->AHL20(1)                                                      --------->ANAC58         <---------AHL20(1)                               --------->ANAC58       --------->ANAC58         --------->AHL20(2)                               --------->ANAC58    -------->P                  <---------AHL20(2)                       --------->AHL20(1)          ------>MYB46(1)          --------->AHL20(2)                    <---------ANAC55(2)            ------>MYB83           --------->ARR11(3)                    <---------ANAC46     <---------ARR11(3)               <---------ARR11(3)             --------------->AGL15<-----------GT1------->GAMYB        ---------->DOF2         <----------DOF2   <-----------GT1 --------->TOE2(3)       ------>ZmHOX2a(1) -------->DOF2<---------TOE1(2)--------->ANAC46 --------->MYB46(3)--------->TOE2(3) --------->AHL20(2)   ccaaaggtatgctttctaggttaagtatattacaagtcaccaatttcttaaccaacaagcttctgtttcctcaaaagataatataatgaaatatagtatt  3814400                         <---------CCA1(1)                         <---------RVE1(1)                        --------->ARR11(3)                                          <---------YAB1                  --------->ZAT18                                               <---------ANAC58                  <---------ETT(2)                                              <---------ANAC58                  --------->ETT(2)  <---------ZAT6         ------>ZmHOX2a(1)    <---------ANAC46        ----------->GT1 <---------ARR11(3)        <-----------GT1            <---------CCA1(2)       <---------------AtSPL8 <---------YAB1     ----------->HVH21        <---------YAB1   tgttttagaattgtacaatgtccacagatattttgatagtcttatttagaaatgacccttcctctatttcttatttcttatagcttgtgatggaggctct  3814500                                                                                                    <                                                                                                    <                                                                                                   --                   ------>ZmHOX2a(1)                                                <---------ZAT6<--                   >>>>>>>>>>>>>>>>>LFY                                  --------->ZAT14       <-----             <<<<<<<<<TBF1    <-----------HVH21                          <---------ZAT14      <------          <<<<<<<<<TBF1      <---------ANAC58                          --------->ETT(2)     ---------      <---------ARR11(3)     <---------ANAC46            --------->MYB46(3)   --------->ATHB12-------      --------->ARR11(3)     <---------ANAC58 <---------TOE1(2)        <---------ETT(2)--------->CCA1(2)   cttcttgagttcttcttcttcctccattgtagcgtcaaacaagcttactaggttacacaaccattgtgtctggtctacagtgattagagataagaaaagg  3814600                              <---------MYB46(3)                             <---------AtMYB61                             <---------ANAC46                          <---------AtMYB61                          --------->ALFIN1                        <---------MYB46(3)                       --------->ALFIN1                       <---------AtMYB61                       <---------DEAR3(1)                     <------MYB46(1)                    <---------AtMYB61     <---------ALFIN1<------MYB83  --------->PCF2   <--------P--------->ALFIN1  <---------TCP20 --------->REM1(2)  <---------TCP15(1)--------->MYB111(1) ------MYB83   <---------ANAC55(1) ------MYB46(1)<---------bZIP60(2)     <---------MYB46(3) ------->MYB59 <---------ANAC58       --------->ALFIN1                            <----------DOF2   < -----TEIL     <---------ANAC46       <---------ANAC46                        ---------->ID1        - ----HSFB2a(1) <---------ANAC58     <---------MYB46(3)                   --------->GLK1(1)          < ---------AtSPL3 --------->ALFIN1  <---------AtMYB61              --------->ARR14(2)               <- ->DOF2       <------NtERF2<---------MYB46(3)                  ----------------->AGL1            <--- -->DAG2     ------>NtERF2<---------DEAR3(1)       ---------->DOF2<---------ARR14(2)   ---------->DOF2   ttcggtcccacttggtgccgtgtaggtggtggtggtgatggtgggagaaacagtaacgcagagaggcctattcgggtttcttcgcttttgaaagacagag  3814700  Previous    Next  AGI:  At3g11980.1    Description:  MS2 (MALE STERILITY 2). Identical to Male sterility protein 2 (MS2) [Arabidopsis Thaliana] (GB:Q08891;GB:Q9LHM3); similar to male sterility protein, putative [Arabidopsis thaliana] (TAIR:AT3G56700.1); similar to male sterility protein 2 [Brassica napus] (GB:CAA68190.1); similar to male sterility 2 [Brassica rapa subsp. chinensis] (GB:ABO14927.1); similar to male sterility protein 2-2 [Brassica napus] (GB:AAZ06658.1); contains InterPro domain Male sterility (InterPro:IPR004262); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Male sterility, NAD-binding (InterPro:IPR013120) Range:  from: 3814242    to: 3817123    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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