Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------GLK1(2)                             --------->At4g35610                               <------ZmHOX2a(1)                             --------->ZAT2                              ------>ZmHOX2a(2)                             <---------At4g35610                       <---------ARR11(3)                             <---------ZAT2                            --------->ARR11(3)                      <----------DOF2                  <---------TOE2(3) =============HOX2a_HOX2a                      <---------DAG2                   <---------ANAC55(2)<----------DOF2 --AGL15       --------->CCA1(2)                ----------->GT1    --------->CCA1(2) ->AGL15      --------->ARR11(1)               --------->DAG2     --------->ARR14(2) ->AGL1       <---------ARR11(3)------>NtERF2 ---------->DOF2     <---------ARR11(3)       <---------ZAT18   aaatcgatggccaaaagatttgaactttatgagctgcccagtttcagataaagtattaagtataccaagatttgatctttaggaatctcatagttcacat  3782600                                                                                                -----                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(3)                                                                                --------->ARR14(2)  <                                                                                <---------ARR14(2)<--                                                                              --------->LBD16   -----                           --------->MYB46(3)    ---------->DOF2             --------->LBD16   <-----                         --------->MYB52(1)     ------->GAMYB                --------->ANAC46  <-----                      --------->ANAC58         --------->ANAC46           --------->ARR14(2) <-------                      --------->ANAC58      <---------WRKY12              <---------ARR14(2) --------                    ---------->DOF2         <---------WRKY38(1)        --------->AtMYB61    <--------              ---------->DOF2             <-----------HVH21         <-----------GT1 <---------TOE2(3)   --------->ARR11(3) --------->ANAC46 <----------DOF2     --------->TOE1(2)<---------LBD16 <--------   aaacacatcttgacttaaaagtcaaagcaacggctaatatgctttgtcaacgaaagagaaacctagaatgaaaccatacccggattgagatttttctata  3782700 ---->ATHB12 ---------MYB46(3) -------WOX13(1) ---->ATHB51 ----AHL20(2)                                                                     --------->At4g35610 ----YAB1                                                                         <---------At4g35610 --------AGL15                                                                    --------->ZAT2 ------->AGL15                                        <---------ARR11(3)          <---------ZAT2 ---------AGL3                                        --------->ARR11(3) <-----------GT1          <-- ---------AGL2                               ---------->DOF2       <---------ANAC46      --------->ZAT18   attggttgaaacaaatttggaccgcattcttgaagttgataagctcgtgaagcgaacatctcgagggaggcttataaacttcccagctaaatgcacagaa  3782800               <---------HSFC1(2)------>NtERF2              <---------MYB46(3)               --------->HSFC1(2)----------->RAV1(1)      --------->At5g28300               --------->At4g35610--------->ATERF1(1)  ------->MYC3              --------->GLK1(2) --------->RAP2.3(2)    <-------MYC3                               ---         <---------YAB1        --------->RAP2.3(1)    --------->ANAC46                       --------      <---------YAB1           --------->ATERF1(1)  <---------ALFIN1                  --------->bZIP60(1)      --------->ICU4          <---------ATERF1(1) ------>MYB83              --------->At4g35610   ---    --------->YAB1       --------->CCA1(2)        ------>MYB46(1)           <---------At4g35610 -----   --------->ICU4 --------->At4g35610  --------->CCA1(2)<---------DEAR3(1)  --------->GLK1(1)-------- ----ZmHOX2a(1)<---------At4g35610<------NtERF2 <---------MYB59       <------ZmHOX2a(2)      --------   ggacgatgatgatgagaagctgctaagaaacgaggcgccagagacgagaaccgaacacgcggtgattgtgagatcgagagctccattgatgccactagcc  3782900                                                                                --------->ARR14(2)                                                                              --------->LBD16 ------>ANAC58                     --------->MYB52(1)                       <---------LBD16 ->ANAC46                 <---------ANAC58                               <----------DOF2 ------>ANAC58         <----------DOF2                      *TSS------------>CBF<---------ARR14(2) ------>RAV1(1)  --------->At4g35610               <---------ANAC58    ------>ZmHOX2a(1)        <---- ->ANAC58        <---------At4g35610  ------->GAMYB<---------ANAC46--------->ARR14(2)       <-------- ->ANAC58<----------DOF2  <---------ANAC58         <---------ANAC58<---------ARR14(2)   >>>>>>>>>TBF1   acacaaaaactctttgctctgcttactttcgtttgcacaacgaaatttgtttgacttgtgtttgtgtccaatcctctttccggttcggaagaagaatata  3783000                              <---------AHL20(2)                              --------->AHL20(2)                              <---------AHL20(1)                           <---------AHL20(2)         <---------LBD16                          <---------AHL20(1)   ------>ZmHOX2a(2)                          --------->AHL20(1)  <------ZmHOX2a(2)                         --------->AHL20(2)  <---------ARR14(3)                      --------->AHL20(1)     <---------ARR14(2)                                    <-                  <---------AHL20(2)   <---------ANAC46                                           ---             <---------MYB52(1)        <---------ANAC58                                           <--            --------->At5g28300<---------AHL20(2)<---------YAB1                                 -----           ----------->GT1<---------AHL20(2) --------->ARR11(3)                                 <----      ------>MYB46(1) <---------AHL20(2)     --------->ARR14(2)                                <-----      ------>MYB83--------->AHL20(2)   <---------ANAC58 --------->LBD16                        <<<<<<    <---------MYB59   --------->AHL20(2)     --------->ARR14(3)          --------->YAB1        <<<<<<    --------->AtMYB61 <---------AHL20(1)     --------->AGP1        --------->TOE2(3)         -------- ---TEIL   --------->LBD16--------->AHL20(2) <---------ARR11(3)    --------->TOE1(3)      <------ZmHOX2a(1) -KAN4(2)<---------LBD16 <---------AHL20(2)----------->ARR10   ---------->DOF2        --------->TOE1(2)   catagaccaaacccggttaattaataaattaatttttttttgggtgagatcttgattccggtttgaaaagcttaatcagaattggacacataggacaatc  3783100  <---------AHL20(2)         ------>MYB83 --------ICU4                ------>MYB46(1) ------>ICU4                --------->WOX13(1) -------YAB1    <----------ID1 ---->YAB1      <---------ANAC55(2) -----ICU4     <---------At5g28300                                                          --------- ----ATHB12    <---------LBD16<---------ATHB12                               <---------AHL20(1) <<<ARR1       --------->RAP2.6(3)       --------->ANAC58                    --------->ARR11(3) <<<ARR2      --------->MYB52(1)         --------->ANAC58                    --------->AHL20(1) ->WOX13(1)<---------------AtSPL3   --------->ATHB12       <-------TEIL      <---------ARR11(3)   ataatgaattgatgaattacggcaaaaaaccaatcaattgattaagcaatacaaaattggatacatttgatgactcaaatattttcagacagacaaaaga  3783200                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                         <---------SPL7                               --------->ANAC58                                         <---------ANAC58                 ---------->DOF2    --------->AtLEC2                                    <---------ANAC58       ----------->GT1         --------->ANAC46                                        <-------------   --------->ATHB12            --------->ANAC58                         --------->ARR11(3) <-------TEIL --------->GLK1(2)           <---------ALFIN1                           <---------ARR11(3) --------->SPL7 ->DOF2<---------MYB46(3)   <-------TEIL                            ---------->DOF2    <-------------   aacaatctttggttaaatgaaaagaaaacatacactccatgctagcttcaagagtttgaactgtctcaacaaaagatgttaagacatatggggtacggtt  3783300                                                             ------->PIF5                                                             ------->MYC3        <---------ANAC46                                     <-------PIF5 ---------ZAT2                                               <-------MYC3 -------->ZAT2                                               ------->MYC2 ---------At4g35610                             <-------TEIL <-------MYC2 -------->At4g35610                          --------->At4g35610         <-------TEIL --AtSPL3                       ----------->HVH21     --------->LBD16 <---------ZAT6 --AtSPL8--------->LBD16      <----------DOF2<---------At4g35610   --------->STY1(1)      ------>ZmHOX2a(1)   tcagcttgcaccgtagaaaaaccttgagagctctttgacagtgcttcagcttcatccgaagcacgagccctagagttcatagtctcttcatccttctctg  3783400                    <---------At4g35610                    --------->At4g35610        <----------DOF2                              <--------                    <---------ZAT2     <---------MYB52(1)                                   <--------            <---------HSFB2a(2)       <---------At4g35610       <---------ALFIN1 <---------YAB1            --------->HSFB2a(2)       <-------GAMYB---------->ID1  <----------DOF2          ---------   tctccatgactattctcgatggagcttcggtttctgtttcagttgatttctttgtctcttcatccccctctttgtccatgactattcttgatggagcttc  3783500  Previous    Next  AGI:  At3g11945.1    Description:  ATHST; prenyltransferase. similar to HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1), prenyltransferase [Arabidopsis thaliana] (TAIR:AT2G18950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23462.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) Range:  from: 3779845    to: 3782960    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g11950.1    Description:  homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase/ prenyltransferase. similar to unnamed protein product [Vitis vinifera] (GB:CAO23458.1); contains InterPro domain Zinc finger, TRAF-type; (InterPro:IPR001293); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 3783117    to: 3785666    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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